Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001032

Physical Location & Seq

Genomic Coordinates Forward (+)

61748497 .. 61748909

Gene Structure 413 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010014

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGTGTAAGGAAGCAAACTTTAGTGGAGTTGAGATGATCTTCTGTGAGATGTCCAAGATGGGGTTTATTCCAGACAAATATTTATTCACTTGGATTGCTGGGCTATGCAGACAGGCAAGTAAGGGACTCATGGTTGAAGCACAACAGGTTTTCAATGATATGTTGAAAAGAGGAATTGCTCCTGACCGTCACGTCTTTGGTATTCTGATAAGAGGGTATTGTGATGAGGGTAATGACGTTGCCATTTTAGGTTTGCACGATGAAATGAGAAAGAGAGGGCTTGTAGCCACAGGAGGTAAAGGAGATGGAGAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

106

Amino Acids

11.67

Weight (kDa)

6.27

Isoelectric Point (pI)

18.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	32 - 75	6.9e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27830 AT5G27830 AT5G27830 AT5G27830 AT5G27830 AT5G27830
fragaria_vesca	FvH4_6g06800 FvH4_6g06800 FvH4_6g06800
malus_domestica	MD04G1198500.v1.1
prunus_persica	Prupe.6G319500_v2.0.a1
pyrus_communis	pycom04g17560 pycom12g19820
rosa_chinensis	RchiOBHm_Chr2g0123281 RchiOBHm_Chr3g0456161 RchiOBHm_Chr3g0458101 RchiOBHm_Chr4g0442861 RchiOBHm_Chr4g0442871 RchiOBHm_Chr4g0442951
rosa_laevigata	RLG00000005970 RLG00000010014
rosa_multiflora	Rmu_sc0000121.1_g000021 Rmu_sc0000124.1_g000039 Rmu_sc0000279.1_g000039 Rmu_sc0000384.1_g000020 Rmu_sc0001917.1_g000005 Rmu_sc0002607.1_g000043 Rmu_sc0007295.1_g000002 Rmu_sc0042689.1_g000001
rosa_roxburghii	Rroxscaffold_6G00423260 Rroxscaffold_6G00423720
rosa_rugosa	Rorug03G0012000 Rorug03G0012100 Rorug04G0109700 Rorug04G0343700
rosa_samantha	Rh1CG037400 Rh2BG184700 Rh2BG311600 Rh3AG072300 Rh3AG085600 Rh3BG074200 Rh3BG088300 Rh3CG073700 Rh3DG075500 Rh3DG089200 Rh4AG396600 Rh4AG396900 Rh4AG397000 Rh4AG397400 Rh4AG397800 Rh4BG409300 Rh4CG424800 Rh4DG403200 Rh4DG403500 Rh4DG403600 Rh4DG404100 Rh5BG556500 Rh6BG383200
rosa_wichuraiana	Rw2G024280 Rw3G005860 Rw3G006140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	191
AfiI	CCNNNNNNNGG	1 cut(s)	60
AgsI	TTSAA	3 cut(s)	137, 154, 166
AjiI	CACGTC	1 cut(s)	193
BccI	CCATC	2 cut(s)	52, 299
BmgBI	CACGTC	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseYI	CCCAGC	1 cut(s)	98
BslFI	GGGAC	1 cut(s)	138
BslI	CCNNNNNNNGG	1 cut(s)	60
BsmFI	GGGAC	1 cut(s)	138
Bsp143I	GATC	1 cut(s)	36
BssMI	GATC	1 cut(s)	36
Bst4CI	ACNGT	1 cut(s)	188
BstKTI	GATC	1 cut(s)	39
BstMBI	GATC	1 cut(s)	36
BtrI	CACGTC	1 cut(s)	193
CviAII	CATG	1 cut(s)	130
CviJI	RGCY	3 cut(s)	103, 280, 287
CviKI_1	RGCY	3 cut(s)	103, 280, 287
DpnI	GATC	1 cut(s)	38
DpnII	GATC	1 cut(s)	36
DrdI	GACNNNNNNGTC	1 cut(s)	191
DseDI	GACNNNNNNGTC	1 cut(s)	191
FaeI	CATG	1 cut(s)	133
FaiI	YATR	3 cut(s)	106, 131, 161
FaqI	GGGAC	1 cut(s)	138
FatI	CATG	1 cut(s)	129
GsaI	CCCAGC	1 cut(s)	102
Hin1II	CATG	1 cut(s)	133
HinfI	GANTC	1 cut(s)	126
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	2 cut(s)	71, 182
HpyCH4III	ACNGT	1 cut(s)	188
HpyCH4IV	ACGT	2 cut(s)	192, 237
HpyCH4V	TGCA	2 cut(s)	108, 256
HpySE526I	ACGT	2 cut(s)	192, 237
Hsp92II	CATG	1 cut(s)	133
Kzo9I	GATC	1 cut(s)	36
LmnI	GCTCC	1 cut(s)	184
LpnPI	CCDG	6 cut(s)	84, 84, 98, 131, 195, 276
MaeII	ACGT	2 cut(s)	192, 237
MaeIII	GTNAC	1 cut(s)	188
MalI	GATC	1 cut(s)	38
MboI	GATC	1 cut(s)	36
MboII	GAAGA	1 cut(s)	31
MluCI	AATT	1 cut(s)	174
MlyI	GAGTC	1 cut(s)	120
MnlI	CCTC	5 cut(s)	164, 206, 220, 269, 287
NdeII	GATC	1 cut(s)	36
NlaIII	CATG	1 cut(s)	133
NmuCI	GTSAC	1 cut(s)	188
PleI	GAGTC	1 cut(s)	120
PpsI	GAGTC	1 cut(s)	120
PspFI	CCCAGC	1 cut(s)	98
Sau3AI	GATC	1 cut(s)	36
SchI	GAGTC	1 cut(s)	120
SetI	ASST	5 cut(s)	150, 195, 240, 253, 298
Sse9I	AATT	1 cut(s)	174
SspI	AATATT	1 cut(s)	80
TaaI	ACNGT	1 cut(s)	188
TaiI	ACGT	2 cut(s)	195, 240
TasI	AATT	1 cut(s)	174
TseFI	GTSAC	1 cut(s)	188
Tsp45I	GTSAC	1 cut(s)	188
TspDTI	ATGAA	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.