Rmu_sc0000121.1_g000021

component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000121.1
OG0001032
Physical Location & Seq
Forward (+)
119554 .. 123960
4407 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000121.1_g000021.1.cds

Sequence Viewer

Length: 732 bp
atgacggttttgctctcgagctgtgtatctggagaggaaaaggcccgagttctctatcgtgttctagaagcctacattgagtgtagccagatacaaacaattcgttctattttcggttttgttctcggatacagacgcggcctgaagagaagttctccagttatggtaaacgtttggtttaatcataagtcgctggggaagctttcaatagggaggagttctgcaagaccttcaaactggagtctcctgatgcagacacacgttaagagatcaaaacttcctttagatggagctgactttgtgatggaagatgtcccattattgacaaatcttctccaatatcatgatgctaaggttttggagcatgcttctctaaatcagtggctatgggacattatagatgagtttgtgtaccagtttcagagcttctgtgagcatagggctaagacgaagaacaagactgagcaggagactacttttctcagacagtttgatcaatttcgaccaccaatcgacatgattcttgtccttatctcttcacctcactcccatctacaactctgtgaagtttcacgatgtgggtcggcccgtggacggcgcagcatcgccaagaagttgtggcggcgctgcaacatttcgccatcttggaactcacgattcctgccaactcctgccaaattaggaggggagaccaactgggctttgttcgtcttgccacgctctagaaactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Paf67

Protein Analysis

243

Amino Acids

28.08

Weight (kDa)

9.86

Isoelectric Point (pI)

63.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 138
AciI CCGC 2 cut(s) 138, 622
AclI AACGTT 1 cut(s) 171
AcuI CTGAAG 1 cut(s) 164
AdeI CACNNNGTG 1 cut(s) 578
AfaI GTAC 1 cut(s) 413
AfiI CCNNNNNNNGG 2 cut(s) 287, 594
AflIII ACRYGT 1 cut(s) 259
AgsI TTSAA 2 cut(s) 207, 234
AluBI AGCT 4 cut(s) 21, 202, 293, 426
AluI AGCT 4 cut(s) 21, 202, 293, 426
Alw26I GTCTC 3 cut(s) 248, 464, 683
Ama87I CYCGRG 2 cut(s) 16, 45
AoxI GGCC 3 cut(s) 42, 139, 585
ApeKI GCWGC 2 cut(s) 600, 627
AspLEI GCGC 2 cut(s) 600, 627
AspS9I GGNCC 2 cut(s) 43, 586
AsuHPI GGTGA 1 cut(s) 531
AvaI CYCGRG 2 cut(s) 16, 45
BbvI GCAGC 2 cut(s) 612, 614
BccI CCATC 4 cut(s) 281, 298, 558, 649
BceAI ACGGC 1 cut(s) 611
BciVI GTATCC 1 cut(s) 122
BclI TGATCA 1 cut(s) 493
BcoDI GTCTC 3 cut(s) 248, 464, 683
BfaI CTAG 2 cut(s) 65, 723
BfoI RGCGCY 1 cut(s) 628
BfuI GTATCC 1 cut(s) 122
BisI GCNGC 4 cut(s) 139, 601, 623, 628
BlsI GCNGC 4 cut(s) 140, 602, 624, 629
BmeT110I CYCGRG 2 cut(s) 16, 45
BmgT120I GGNCC 2 cut(s) 43, 586
BmrI ACTGGG 1 cut(s) 706
BmsI GCATC 3 cut(s) 240, 337, 612
BmuI ACTGGG 1 cut(s) 706
BplI GAGNNNNNCTC 2 cut(s) 139, 171
BpmI CTGGAG 3 cut(s) 51, 141, 259
Bpu10I CCTNAGC 1 cut(s) 351
BsaI GGTCTC 1 cut(s) 683
BsaJI CCNNGG 1 cut(s) 589
Bsc4I CCNNNNNNNGG 2 cut(s) 287, 594
Bse1I ACTGG 4 cut(s) 158, 242, 415, 701
BseDI CCNNGG 1 cut(s) 589
BseLI CCNNNNNNNGG 2 cut(s) 287, 594
BseMII CTCAG 2 cut(s) 453, 496
BseNI ACTGG 4 cut(s) 158, 242, 415, 701
BseRI GAGGAG 1 cut(s) 229
BseXI GCAGC 2 cut(s) 612, 614
BseYI CCCAGC 1 cut(s) 193
Bsh1236I CGCG 1 cut(s) 138
BshFI GGCC 3 cut(s) 44, 141, 587
BsiHKCI CYCGRG 2 cut(s) 16, 45
BslFI GGGAC 2 cut(s) 299, 404
BslI CCNNNNNNNGG 2 cut(s) 287, 594
BsmAI GTCTC 3 cut(s) 248, 464, 683
BsmFI GGGAC 2 cut(s) 299, 404
BsnI GGCC 3 cut(s) 44, 141, 587
Bso31I GGTCTC 1 cut(s) 683
BsoBI CYCGRG 2 cut(s) 16, 45
Bsp143I GATC 2 cut(s) 269, 493
BspACI CCGC 2 cut(s) 138, 622
BspANI GGCC 3 cut(s) 44, 141, 587
BspCNI CTCAG 2 cut(s) 454, 495
BspFNI CGCG 1 cut(s) 138
BspHI TCATGA 1 cut(s) 343
BspTNI GGTCTC 1 cut(s) 683
BsrI ACTGG 4 cut(s) 158, 242, 415, 701
BssECI CCNNGG 1 cut(s) 589
BssMI GATC 2 cut(s) 269, 493
Bst4CI ACNGT 2 cut(s) 7, 489
Bst6I CTCTTC 2 cut(s) 140, 541
BstC8I GCNNGC 1 cut(s) 366
BstDEI CTNAG 4 cut(s) 351, 444, 462, 482
BstDSI CCRYGG 1 cut(s) 589
BstFNI CGCG 1 cut(s) 138
BstH2I RGCGCY 1 cut(s) 628
BstHHI GCGC 2 cut(s) 600, 627
BstKTI GATC 2 cut(s) 272, 496
BstMAI GTCTC 3 cut(s) 248, 464, 683
BstMBI GATC 2 cut(s) 269, 493
BstMWI GCNNNNNNNGC 1 cut(s) 199
BstNSI RCATGY 1 cut(s) 368
BstUI CGCG 1 cut(s) 138
BstV1I GCAGC 2 cut(s) 612, 614
BsuI GTATCC 1 cut(s) 122
BsuRI GGCC 3 cut(s) 44, 141, 587
BtgI CCRYGG 1 cut(s) 589
BtgZI GCGATG 1 cut(s) 589
BtsIMutI CAGTG 1 cut(s) 386
Cac8I GCNNGC 1 cut(s) 366
CciI TCATGA 1 cut(s) 343
CfoI GCGC 2 cut(s) 600, 627
Cfr13I GGNCC 2 cut(s) 43, 586
CseI GACGC 1 cut(s) 144
Csp6I GTAC 1 cut(s) 412
CviAII CATG 3 cut(s) 344, 365, 517
CviQI GTAC 1 cut(s) 412
DdeI CTNAG 4 cut(s) 351, 444, 462, 482
DpnI GATC 2 cut(s) 271, 495
DpnII GATC 2 cut(s) 269, 493
DraIII CACNNNGTG 1 cut(s) 578
Eam1104I CTCTTC 2 cut(s) 140, 541
EarI CTCTTC 2 cut(s) 140, 541
Eco31I GGTCTC 1 cut(s) 683
Eco57I CTGAAG 1 cut(s) 164
Eco88I CYCGRG 2 cut(s) 16, 45
FaeI CATG 3 cut(s) 347, 368, 520
FaiI YATR 8 cut(s) 164, 186, 345, 366, 388, 398, 438, 518
FaqI GGGAC 2 cut(s) 299, 404
FatI CATG 3 cut(s) 343, 364, 516
FbaI TGATCA 1 cut(s) 493
Fnu4HI GCNGC 4 cut(s) 139, 601, 623, 628
Fsp4HI GCNGC 4 cut(s) 139, 601, 623, 628
FspBI CTAG 2 cut(s) 65, 723
GlaI GCGC 2 cut(s) 599, 626
GluI GCNGC 4 cut(s) 139, 601, 623, 628
GsaI CCCAGC 1 cut(s) 197
GsuI CTGGAG 3 cut(s) 51, 141, 259
HaeII RGCGCY 1 cut(s) 628
HaeIII GGCC 3 cut(s) 44, 141, 587
HgaI GACGC 1 cut(s) 144
HhaI GCGC 2 cut(s) 600, 627
Hin1II CATG 3 cut(s) 347, 368, 520
Hin6I GCGC 2 cut(s) 598, 625
HinP1I GCGC 2 cut(s) 598, 625
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 3 cut(s) 241, 520, 657
HphI GGTGA 1 cut(s) 531
Hpy166II GTNNAC 3 cut(s) 169, 412, 593
Hpy188I TCNGA 3 cut(s) 128, 423, 485
Hpy188III TCNNGA 8 cut(s) 16, 30, 65, 247, 344, 573, 654, 723
Hpy8I GTNNAC 3 cut(s) 169, 412, 593
HpyAV CCTTC 1 cut(s) 240
HpyCH4III ACNGT 2 cut(s) 7, 489
HpyCH4IV ACGT 2 cut(s) 171, 261
HpyCH4V TGCA 3 cut(s) 224, 253, 630
HpyF10VI GCNNNNNNNGC 1 cut(s) 199
HpyF3I CTNAG 4 cut(s) 351, 444, 462, 482
HpySE526I ACGT 2 cut(s) 171, 261
Hsp92II CATG 3 cut(s) 347, 368, 520
HspAI GCGC 2 cut(s) 598, 625
Ksp22I TGATCA 1 cut(s) 493
Kzo9I GATC 2 cut(s) 269, 493
LmnI GCTCC 2 cut(s) 290, 361
Lsp1109I GCAGC 2 cut(s) 612, 614
LweI GCATC 3 cut(s) 240, 337, 612
MaeI CTAG 2 cut(s) 65, 723
MaeII ACGT 2 cut(s) 171, 261
MalI GATC 2 cut(s) 271, 495
MboI GATC 2 cut(s) 269, 493
MboII GAAGA 5 cut(s) 157, 320, 323, 463, 528
MluCI AATT 3 cut(s) 99, 497, 677
MlyI GAGTC 1 cut(s) 250
MnlI CCTC 4 cut(s) 28, 207, 552, 677
MseI TTAA 2 cut(s) 180, 264
MvnI CGCG 1 cut(s) 138
MwoI GCNNNNNNNGC 1 cut(s) 199
NdeII GATC 2 cut(s) 269, 493
NlaIII CATG 3 cut(s) 347, 368, 520
NspI RCATGY 1 cut(s) 368
PaeI GCATGC 1 cut(s) 368
PaeR7I CTCGAG 1 cut(s) 16
PagI TCATGA 1 cut(s) 343
PfeI GAWTC 2 cut(s) 520, 657
PkrI GCNGC 4 cut(s) 140, 602, 624, 629
PleI GAGTC 1 cut(s) 249
PpsI GAGTC 1 cut(s) 249
Psp1406I AACGTT 1 cut(s) 171
PspFI CCCAGC 1 cut(s) 193
PspPI GGNCC 2 cut(s) 43, 586
RsaI GTAC 1 cut(s) 413
RsaNI GTAC 1 cut(s) 412
SaqAI TTAA 2 cut(s) 180, 264
SatI GCNGC 4 cut(s) 139, 601, 623, 628
Sau3AI GATC 2 cut(s) 269, 493
Sau96I GGNCC 2 cut(s) 43, 586
SchI GAGTC 1 cut(s) 250
SetI ASST 9 cut(s) 23, 174, 204, 232, 264, 295, 357, 428, 544
SfaNI GCATC 3 cut(s) 240, 337, 612
Sfr274I CTCGAG 1 cut(s) 16
SlaI CTCGAG 1 cut(s) 16
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
SphI GCATGC 1 cut(s) 368
Sse9I AATT 3 cut(s) 99, 497, 677
SsiI CCGC 2 cut(s) 138, 622
SspMI CTAG 2 cut(s) 65, 723
TaaI ACNGT 2 cut(s) 7, 489
TaiI ACGT 2 cut(s) 174, 264
TaqI TCGA 3 cut(s) 17, 502, 513
TasI AATT 3 cut(s) 99, 497, 677
TauI GCSGC 2 cut(s) 141, 625
TfiI GAWTC 2 cut(s) 520, 657
Tru1I TTAA 2 cut(s) 180, 264
Tru9I TTAA 2 cut(s) 180, 264
TscAI CASTG 1 cut(s) 386
TseI GCWGC 2 cut(s) 600, 627
TspRI CASTG 1 cut(s) 386
XbaI TCTAGA 2 cut(s) 64, 722
XceI RCATGY 1 cut(s) 368
XhoI CTCGAG 1 cut(s) 16
XspI CTAG 2 cut(s) 65, 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.