Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001032

Physical Location & Seq

Genomic Coordinates Forward (+)

36401419 .. 36402214

Gene Structure 796 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49559

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGAATTATTGGAATGTTCCATCTGCGGTCCTCGCATTGGTGTAGAGCAAGGACCTCCAGTTATATGTGCCTCGTTCTGTGACAGGGTCTTCAAGGCTTGTGCCGAGGCTTACTACTTGAGGGATGCAATAACACAGGCATCTGAGTGGATCCGTAATGACACAGAGTTATGCCATGCTGAGGTGTTTTCTGTGAAAGAATATACATCTGAGGGCATGGAAGAAACACTTTTCTATGGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Folate_rec

Protein Analysis

81

Amino Acids

9.12

Weight (kDa)

4.38

Isoelectric Point (pI)

44.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Folate_rec	PF03024	4 - 73	1.3e-06	Folate receptor family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27830 AT5G27830 AT5G27830 AT5G27830 AT5G27830 AT5G27830
fragaria_vesca	FvH4_6g06800 FvH4_6g06800 FvH4_6g06800
malus_domestica	MD04G1198500.v1.1
prunus_persica	Prupe.6G319500_v2.0.a1
pyrus_communis	pycom04g17560 pycom12g19820
rosa_chinensis	RchiOBHm_Chr2g0123281 RchiOBHm_Chr3g0456161 RchiOBHm_Chr3g0458101 RchiOBHm_Chr4g0442861 RchiOBHm_Chr4g0442871 RchiOBHm_Chr4g0442951
rosa_laevigata	RLG00000005970 RLG00000010014
rosa_multiflora	Rmu_sc0000121.1_g000021 Rmu_sc0000124.1_g000039 Rmu_sc0000279.1_g000039 Rmu_sc0000384.1_g000020 Rmu_sc0001917.1_g000005 Rmu_sc0002607.1_g000043 Rmu_sc0007295.1_g000002 Rmu_sc0042689.1_g000001
rosa_roxburghii	Rroxscaffold_6G00423260 Rroxscaffold_6G00423720
rosa_rugosa	Rorug03G0012000 Rorug03G0012100 Rorug04G0109700 Rorug04G0343700
rosa_samantha	Rh1CG037400 Rh2BG184700 Rh2BG311600 Rh3AG072300 Rh3AG085600 Rh3BG074200 Rh3BG088300 Rh3CG073700 Rh3DG075500 Rh3DG089200 Rh4AG396600 Rh4AG396900 Rh4AG397000 Rh4AG397400 Rh4AG397800 Rh4BG409300 Rh4CG424800 Rh4DG403200 Rh4DG403500 Rh4DG403600 Rh4DG404100 Rh5BG556500 Rh6BG383200
rosa_wichuraiana	Rw2G024280 Rw3G005860 Rw3G006140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	27
AclWI	GGATC	2 cut(s)	145, 158
AfiI	CCNNNNNNNGG	2 cut(s)	38, 181
AgsI	TTSAA	1 cut(s)	94
AlwI	GGATC	2 cut(s)	145, 158
AspS9I	GGNCC	2 cut(s)	29, 53
AvaII	GGWCC	2 cut(s)	29, 53
BamHI	GGATCC	1 cut(s)	150
BbsI	GAAGAC	1 cut(s)	82
BbvCI	CCTCAGC	1 cut(s)	180
BccI	CCATC	1 cut(s)	29
Bme18I	GGWCC	2 cut(s)	29, 53
BmgT120I	GGNCC	2 cut(s)	29, 53
BmiI	GGNNCC	1 cut(s)	152
BmsI	GCATC	2 cut(s)	115, 149
BpiI	GAAGAC	1 cut(s)	82
BpmI	CTGGAG	1 cut(s)	42
Bpu10I	CCTNAGC	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	139
BsaJI	CCNNGG	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 181
Bse1I	ACTGG	1 cut(s)	59
BseDI	CCNNGG	1 cut(s)	105
BseGI	GGATG	1 cut(s)	130
BseLI	CCNNNNNNNGG	2 cut(s)	38, 181
BseMII	CTCAG	3 cut(s)	135, 171, 201
BseNI	ACTGG	1 cut(s)	59
BslI	CCNNNNNNNGG	2 cut(s)	38, 181
Bsp143I	GATC	1 cut(s)	150
BspACI	CCGC	1 cut(s)	27
BspCNI	CTCAG	3 cut(s)	136, 172, 202
BspLI	GGNNCC	1 cut(s)	152
BspPI	GGATC	2 cut(s)	145, 158
BsrI	ACTGG	1 cut(s)	59
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	1 cut(s)	150
BstDEI	CTNAG	3 cut(s)	144, 180, 210
BstF5I	GGATG	1 cut(s)	130
BstKTI	GATC	1 cut(s)	153
BstMBI	GATC	1 cut(s)	150
BstMWI	GCNNNNNNNGC	1 cut(s)	33
BstV2I	GAAGAC	1 cut(s)	82
BstX2I	RGATCY	1 cut(s)	150
BstYI	RGATCY	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	130
Cfr13I	GGNCC	2 cut(s)	29, 53
CviAII	CATG	2 cut(s)	176, 217
CviJI	RGCY	2 cut(s)	98, 110
CviKI_1	RGCY	2 cut(s)	98, 110
DdeI	CTNAG	3 cut(s)	144, 180, 210
DpnI	GATC	1 cut(s)	152
DpnII	GATC	1 cut(s)	150
Eco47I	GGWCC	2 cut(s)	29, 53
EcoO109I	RGGNCCY	1 cut(s)	53
FaeI	CATG	2 cut(s)	179, 220
FaiI	YATR	7 cut(s)	65, 67, 172, 177, 204, 218, 237
FalI	AAGNNNNNCTT	2 cut(s)	213, 245
FatI	CATG	2 cut(s)	175, 216
FokI	GGATG	1 cut(s)	137
GsuI	CTGGAG	1 cut(s)	42
Hin1II	CATG	2 cut(s)	179, 220
Hpy188I	TCNGA	2 cut(s)	145, 211
HpyCH4V	TGCA	1 cut(s)	128
HpyF10VI	GCNNNNNNNGC	1 cut(s)	33
HpyF3I	CTNAG	3 cut(s)	144, 180, 210
Hsp92II	CATG	2 cut(s)	179, 220
Kzo9I	GATC	1 cut(s)	150
LpnPI	CCDG	3 cut(s)	70, 72, 122
LweI	GCATC	2 cut(s)	115, 149
MaeIII	GTNAC	1 cut(s)	80
MalI	GATC	1 cut(s)	152
MboI	GATC	1 cut(s)	150
MboII	GAAGA	2 cut(s)	82, 233
MflI	RGATCY	1 cut(s)	150
MluCI	AATT	1 cut(s)	5
MnlI	CCTC	7 cut(s)	42, 66, 82, 100, 114, 175, 205
MseI	TTAA	1 cut(s)	244
MslI	CAYNNNNRTG	1 cut(s)	145
MwoI	GCNNNNNNNGC	1 cut(s)	33
NdeII	GATC	1 cut(s)	150
NlaIII	CATG	2 cut(s)	179, 220
NlaIV	GGNNCC	1 cut(s)	152
NmeAIII	GCCGAG	1 cut(s)	130
NmuCI	GTSAC	1 cut(s)	80
PflFI	GACNNNGTC	1 cut(s)	86
PpuMI	RGGWCCY	1 cut(s)	53
Psp5II	RGGWCCY	1 cut(s)	53
PspN4I	GGNNCC	1 cut(s)	152
PspPI	GGNCC	2 cut(s)	29, 53
PspPPI	RGGWCCY	1 cut(s)	53
PsuI	RGATCY	1 cut(s)	150
PsyI	GACNNNGTC	1 cut(s)	86
RseI	CAYNNNNRTG	1 cut(s)	145
SaqAI	TTAA	1 cut(s)	244
Sau3AI	GATC	1 cut(s)	150
Sau96I	GGNCC	2 cut(s)	29, 53
SetI	ASST	2 cut(s)	58, 186
SfaNI	GCATC	2 cut(s)	115, 149
SinI	GGWCC	2 cut(s)	29, 53
SmiMI	CAYNNNNRTG	1 cut(s)	145
SmlI	CTYRAG	1 cut(s)	118
SmoI	CTYRAG	1 cut(s)	118
Sse9I	AATT	1 cut(s)	5
SsiI	CCGC	1 cut(s)	27
TasI	AATT	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	244
Tru9I	TTAA	1 cut(s)	244
TseFI	GTSAC	1 cut(s)	80
Tsp45I	GTSAC	1 cut(s)	80
TspGWI	ACGGA	1 cut(s)	143
Tth111I	GACNNNGTC	1 cut(s)	86
VpaK11BI	GGWCC	2 cut(s)	29, 53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.