Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001032

Physical Location & Seq

Genomic Coordinates Reverse (-)

6923478 .. 6923984

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42481

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGCTAATGAGGAGTTCTGCAAGACCTTCAAACTGGAGTCTCCTGATGCAGACACATGTTAAGAGATCAAAACTTCCTTTAGATGGAGCTGACTTTGTGATGGAAGATGTCCCATTATTGACAAATCTTCTCCAATATCATGATGCTAAGGTTTTGGAGCATGCTTCTGTATGTCTGACCCGAATTGCTGAATCATTTAGCCAATATTTTTTTTTCCTTATGTTATTTTTGTTAAAAGAAAAAGTGGTTTGTATATTTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006464 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016020 GO:0016043 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022402 GO:0030154 GO:0032446 GO:0032502 GO:0032989 GO:0034641 GO:0034645 GO:0036211 GO:0042023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048468 GO:0048856 GO:0048869 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0090558 GO:0090626 GO:0140096 GO:1901360 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

HECT

Protein Analysis

87

Amino Acids

10.12

Weight (kDa)

7.83

Isoelectric Point (pI)

34.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27830 AT5G27830 AT5G27830 AT5G27830 AT5G27830 AT5G27830
fragaria_vesca	FvH4_6g06800 FvH4_6g06800 FvH4_6g06800
malus_domestica	MD04G1198500.v1.1
prunus_persica	Prupe.6G319500_v2.0.a1
pyrus_communis	pycom04g17560 pycom12g19820
rosa_chinensis	RchiOBHm_Chr2g0123281 RchiOBHm_Chr3g0456161 RchiOBHm_Chr3g0458101 RchiOBHm_Chr4g0442861 RchiOBHm_Chr4g0442871 RchiOBHm_Chr4g0442951
rosa_laevigata	RLG00000005970 RLG00000010014
rosa_multiflora	Rmu_sc0000121.1_g000021 Rmu_sc0000124.1_g000039 Rmu_sc0000279.1_g000039 Rmu_sc0000384.1_g000020 Rmu_sc0001917.1_g000005 Rmu_sc0002607.1_g000043 Rmu_sc0007295.1_g000002 Rmu_sc0042689.1_g000001
rosa_roxburghii	Rroxscaffold_6G00423260 Rroxscaffold_6G00423720
rosa_rugosa	Rorug03G0012000 Rorug03G0012100 Rorug04G0109700 Rorug04G0343700
rosa_samantha	Rh1CG037400 Rh2BG184700 Rh2BG311600 Rh3AG072300 Rh3AG085600 Rh3BG074200 Rh3BG088300 Rh3CG073700 Rh3DG075500 Rh3DG089200 Rh4AG396600 Rh4AG396900 Rh4AG397000 Rh4AG397400 Rh4AG397800 Rh4BG409300 Rh4CG424800 Rh4DG403200 Rh4DG403500 Rh4DG403600 Rh4DG404100 Rh5BG556500 Rh6BG383200
rosa_wichuraiana	Rw2G024280 Rw3G005860 Rw3G006140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	83
AflIII	ACRYGT	1 cut(s)	55
AgsI	TTSAA	1 cut(s)	30
AluBI	AGCT	1 cut(s)	89
AluI	AGCT	1 cut(s)	89
Alw26I	GTCTC	1 cut(s)	44
BccI	CCATC	2 cut(s)	77, 94
BcoDI	GTCTC	1 cut(s)	44
BmsI	GCATC	2 cut(s)	36, 133
BpmI	CTGGAG	1 cut(s)	55
Bpu10I	CCTNAGC	1 cut(s)	147
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	38
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseNI	ACTGG	1 cut(s)	38
BseRI	GAGGAG	1 cut(s)	25
BslFI	GGGAC	1 cut(s)	95
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	95
Bsp143I	GATC	1 cut(s)	65
BspHI	TCATGA	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	38
BssMI	GATC	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	162
BstDEI	CTNAG	1 cut(s)	147
BstKTI	GATC	1 cut(s)	68
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	1 cut(s)	65
BstNSI	RCATGY	2 cut(s)	59, 164
Cac8I	GCNNGC	1 cut(s)	162
CciI	TCATGA	1 cut(s)	139
CviAII	CATG	3 cut(s)	56, 140, 161
CviJI	RGCY	2 cut(s)	89, 201
CviKI_1	RGCY	2 cut(s)	89, 201
DdeI	CTNAG	1 cut(s)	147
DpnI	GATC	1 cut(s)	67
DpnII	GATC	1 cut(s)	65
FaeI	CATG	3 cut(s)	59, 143, 164
FaiI	YATR	7 cut(s)	57, 141, 162, 172, 221, 254, 262
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	3 cut(s)	55, 139, 160
GsuI	CTGGAG	1 cut(s)	55
Hin1II	CATG	3 cut(s)	59, 143, 164
HinfI	GANTC	2 cut(s)	37, 191
Hpy188I	TCNGA	1 cut(s)	177
Hpy188III	TCNNGA	2 cut(s)	43, 140
HpyAV	CCTTC	1 cut(s)	36
HpyCH4V	TGCA	2 cut(s)	20, 49
HpyF3I	CTNAG	1 cut(s)	147
Hsp92II	CATG	3 cut(s)	59, 143, 164
Kzo9I	GATC	1 cut(s)	65
LmnI	GCTCC	2 cut(s)	86, 157
LpnPI	CCDG	2 cut(s)	19, 56
LweI	GCATC	2 cut(s)	36, 133
MalI	GATC	1 cut(s)	67
MboI	GATC	1 cut(s)	65
MboII	GAAGA	2 cut(s)	116, 119
MluCI	AATT	1 cut(s)	183
MlyI	GAGTC	1 cut(s)	46
MnlI	CCTC	1 cut(s)	3
MseI	TTAA	2 cut(s)	60, 233
NdeII	GATC	1 cut(s)	65
NlaIII	CATG	3 cut(s)	59, 143, 164
NspI	RCATGY	2 cut(s)	59, 164
PaeI	GCATGC	1 cut(s)	164
PagI	TCATGA	1 cut(s)	139
PciI	ACATGT	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	191
PleI	GAGTC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	45
PscI	ACATGT	1 cut(s)	55
SaqAI	TTAA	2 cut(s)	60, 233
Sau3AI	GATC	1 cut(s)	65
SchI	GAGTC	1 cut(s)	46
SetI	ASST	3 cut(s)	28, 91, 153
SfaNI	GCATC	2 cut(s)	36, 133
SgeI	CNNG	7 cut(s)	33, 46, 55, 68, 152, 173, 192
SphI	GCATGC	1 cut(s)	164
Sse9I	AATT	1 cut(s)	183
SspI	AATATT	1 cut(s)	206
TasI	AATT	1 cut(s)	183
TfiI	GAWTC	1 cut(s)	191
Tru1I	TTAA	2 cut(s)	60, 233
Tru9I	TTAA	2 cut(s)	60, 233
XceI	RCATGY	2 cut(s)	59, 164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.