Rh3BG088300

branched-chain-amino-acid aminotransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0001032
Physical Location & Seq
Reverse (-)
6888156 .. 6892161
4006 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG088300.1

Sequence Viewer

Length: 771 bp
ATGCTTTGCCTTTGTGGGTGGTGGATTAGCTTTTGGTTGGCTTGGAGGAGCAGTGCATCTCCCTTGCTTGTCCGCTACCCTTCGAATTGGAGGAGTTCCGCAAGACCTTCAGACTGGAGTTTCTTGATGCAGTCACATGTTAAGAGATCAAAACTTCCTTCAGATGGAGCTGACTTTGTGATGGAAGATGTCCCATTATTGACTAATCTTCTGCAATATCATGATGCTAAGGTTTTGGAGCATGCTTCTATGAGTTTGTGTACTAGTTTCAGAGCTTCTGTCAGCATAGGGCTAAGACGAAGAACAAGACTGAGCAGGAGACTACTTTTCTCAGACAGTTTGATCAAATTCACAAAAATATGTAAAATTAATCAGGAAGCTAAAGCATTATTAAGAAGATACAGATATCGTACAGGAACCATAGATGTTGCTTTACATGAGACGTTCTTAAGAAGCCGCTTAACCTCAAAATGGAAGAGAGAGAGTGAAGAAGGAAACCATCAATCTGCAACTAGTTCAGCTGGAAGCCTGGAACCACAGGTTGAGGAGCGCCCTGTGTCGATTGAGGAATTGCTAGAAGCTGATGAAGTGTTCTGTACTGGATATGCTGTCTGTTTATCACCTATAGGCAGCATAACTTACCTGGGAAAAAGGGTGTCTTACCAAGAAACTGGACTTGGTGGAGTTTCTGAGCAACTGTATCAGGCTCTTTCAAATATACAGATGGGTCTTGCAGAAGAAAATAGGGGTTGGATAGTAACCTTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

256

Amino Acids

29.15

Weight (kDa)

9.16

Isoelectric Point (pI)

64.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 73, 99, 457
AcsI RAATTY 1 cut(s) 347
AcuI CTGAAG 2 cut(s) 93, 144
AfaI GTAC 3 cut(s) 262, 412, 598
AfiI CCNNNNNNNGG 2 cut(s) 164, 471
AflII CTTAAG 1 cut(s) 448
AflIII ACRYGT 1 cut(s) 136
AgsI TTSAA 2 cut(s) 714, 766
AhlI ACTAGT 2 cut(s) 263, 512
AjnI CCWGG 2 cut(s) 528, 642
AjuI GAANNNNNNNTTGG 2 cut(s) 660, 692
AluBI AGCT 6 cut(s) 30, 170, 275, 380, 521, 581
AluI AGCT 6 cut(s) 30, 170, 275, 380, 521, 581
Alw26I GTCTC 2 cut(s) 313, 434
ApeKI GCWGC 1 cut(s) 630
ApoI RAATTY 1 cut(s) 347
AseI ATTAAT 1 cut(s) 369
AspLEI GCGC 1 cut(s) 552
AsuHPI GGTGA 1 cut(s) 612
AsuII TTCGAA 1 cut(s) 83
BbvI GCAGC 1 cut(s) 642
BccI CCATC 4 cut(s) 158, 175, 507, 718
BciT130I CCWGG 2 cut(s) 530, 644
BclI TGATCA 1 cut(s) 342
BcoDI GTCTC 2 cut(s) 313, 434
BcuI ACTAGT 2 cut(s) 263, 512
BfaI CTAG 3 cut(s) 264, 513, 575
BfmI CTRYAG 1 cut(s) 624
BfoI RGCGCY 1 cut(s) 553
BfrI CTTAAG 1 cut(s) 448
BisI GCNGC 2 cut(s) 457, 631
BlsI GCNGC 2 cut(s) 458, 632
Bme1390I CCNGG 2 cut(s) 530, 644
BmiI GGNNCC 2 cut(s) 418, 534
BmrFI CCNGG 2 cut(s) 530, 644
BmsI GCATC 3 cut(s) 65, 117, 214
BpmI CTGGAG 1 cut(s) 136
Bpu10I CCTNAGC 1 cut(s) 228
Bpu14I TTCGAA 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 643
BsaXI ACNNNNNCTCC 2 cut(s) 37, 67
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 471
Bse1I ACTGG 3 cut(s) 119, 604, 676
BseBI CCWGG 2 cut(s) 530, 644
BseDI CCNNGG 1 cut(s) 643
BseLI CCNNNNNNNGG 2 cut(s) 164, 471
BseMII CTCAG 3 cut(s) 302, 345, 681
BseNI ACTGG 3 cut(s) 119, 604, 676
BseRI GAGGAG 3 cut(s) 61, 106, 560
BseXI GCAGC 1 cut(s) 642
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 2 cut(s) 164, 471
BsmAI GTCTC 2 cut(s) 313, 434
BsmBI CGTCTC 1 cut(s) 434
BsmFI GGGAC 1 cut(s) 176
Bsp119I TTCGAA 1 cut(s) 83
Bsp143I GATC 2 cut(s) 146, 342
BspACI CCGC 3 cut(s) 73, 99, 457
BspCNI CTCAG 3 cut(s) 303, 344, 682
BspHI TCATGA 1 cut(s) 220
BspLI GGNNCC 2 cut(s) 418, 534
BspT104I TTCGAA 1 cut(s) 83
BspTI CTTAAG 1 cut(s) 448
BsrI ACTGG 3 cut(s) 119, 604, 676
BssECI CCNNGG 1 cut(s) 643
BssMI GATC 2 cut(s) 146, 342
Bst2UI CCWGG 2 cut(s) 530, 644
Bst4CI ACNGT 2 cut(s) 338, 699
Bst6I CTCTTC 1 cut(s) 470
BstAFI CTTAAG 1 cut(s) 448
BstBI TTCGAA 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 5 cut(s) 228, 293, 311, 331, 690
BstH2I RGCGCY 1 cut(s) 553
BstHHI GCGC 1 cut(s) 552
BstKTI GATC 2 cut(s) 149, 345
BstMAI GTCTC 2 cut(s) 313, 434
BstMBI GATC 2 cut(s) 146, 342
BstNI CCWGG 2 cut(s) 530, 644
BstNSI RCATGY 2 cut(s) 140, 245
BstSCI CCNGG 2 cut(s) 528, 642
BstSFI CTRYAG 1 cut(s) 624
BstV1I GCAGC 1 cut(s) 642
BstXI CCANNNNNNTGG 1 cut(s) 671
BtsI GCAGTG 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 58
Cac8I GCNNGC 1 cut(s) 243
CciI TCATGA 1 cut(s) 220
CfoI GCGC 1 cut(s) 552
Csp6I GTAC 3 cut(s) 261, 411, 597
CviAII CATG 4 cut(s) 137, 221, 242, 437
CviQI GTAC 3 cut(s) 261, 411, 597
DdeI CTNAG 5 cut(s) 228, 293, 311, 331, 690
DpnI GATC 2 cut(s) 148, 344
DpnII GATC 2 cut(s) 146, 342
Eam1104I CTCTTC 1 cut(s) 470
EarI CTCTTC 1 cut(s) 470
Eco32I GATATC 1 cut(s) 407
Eco57I CTGAAG 2 cut(s) 93, 144
EcoRII CCWGG 2 cut(s) 528, 642
EcoRV GATATC 1 cut(s) 407
Esp3I CGTCTC 1 cut(s) 434
FaeI CATG 4 cut(s) 140, 224, 245, 440
FalI AAGNNNNNCTT 2 cut(s) 643, 675
FaqI GGGAC 1 cut(s) 176
FatI CATG 4 cut(s) 136, 220, 241, 436
FbaI TGATCA 1 cut(s) 342
Fnu4HI GCNGC 2 cut(s) 457, 631
Fsp4HI GCNGC 2 cut(s) 457, 631
FspBI CTAG 3 cut(s) 264, 513, 575
GlaI GCGC 1 cut(s) 551
GluI GCNGC 2 cut(s) 457, 631
GsuI CTGGAG 1 cut(s) 136
HaeII RGCGCY 1 cut(s) 553
HhaI GCGC 1 cut(s) 552
Hin1II CATG 4 cut(s) 140, 224, 245, 440
Hin6I GCGC 1 cut(s) 550
HinP1I GCGC 1 cut(s) 550
HphI GGTGA 1 cut(s) 612
Hpy166II GTNNAC 1 cut(s) 261
Hpy188I TCNGA 5 cut(s) 112, 163, 272, 334, 691
Hpy188III TCNNGA 3 cut(s) 124, 221, 374
Hpy8I GTNNAC 1 cut(s) 261
HpyAV CCTTC 4 cut(s) 90, 117, 168, 485
HpyCH4III ACNGT 2 cut(s) 338, 699
HpyCH4IV ACGT 1 cut(s) 443
HpyCH4V TGCA 5 cut(s) 56, 130, 214, 509, 734
HpyF3I CTNAG 5 cut(s) 228, 293, 311, 331, 690
HpySE526I ACGT 1 cut(s) 443
Hsp92II CATG 4 cut(s) 140, 224, 245, 440
HspAI GCGC 1 cut(s) 550
Ksp22I TGATCA 1 cut(s) 342
Kzo9I GATC 2 cut(s) 146, 342
LmnI GCTCC 4 cut(s) 48, 167, 238, 547
Lsp1109I GCAGC 1 cut(s) 642
LweI GCATC 3 cut(s) 65, 117, 214
MaeI CTAG 3 cut(s) 264, 513, 575
MaeII ACGT 1 cut(s) 443
MaeIII GTNAC 2 cut(s) 132, 757
MalI GATC 2 cut(s) 148, 344
MboI GATC 2 cut(s) 146, 342
MboII GAAGA 7 cut(s) 197, 200, 312, 408, 487, 500, 749
MluCI AATT 4 cut(s) 85, 347, 366, 569
MmeI TCCRAC 1 cut(s) 731
MnlI CCTC 5 cut(s) 39, 84, 475, 538, 559
MseI TTAA 5 cut(s) 141, 369, 392, 449, 461
MspA1I CMGCKG 1 cut(s) 521
MspCI CTTAAG 1 cut(s) 448
MspR9I CCNGG 2 cut(s) 530, 644
MvaI CCWGG 2 cut(s) 530, 644
NdeII GATC 2 cut(s) 146, 342
NlaIII CATG 4 cut(s) 140, 224, 245, 440
NlaIV GGNNCC 2 cut(s) 418, 534
NmuCI GTSAC 1 cut(s) 132
NspI RCATGY 2 cut(s) 140, 245
NspV TTCGAA 1 cut(s) 83
PaeI GCATGC 1 cut(s) 245
PagI TCATGA 1 cut(s) 220
PciI ACATGT 1 cut(s) 136
PkrI GCNGC 2 cut(s) 458, 632
PscI ACATGT 1 cut(s) 136
PshBI ATTAAT 1 cut(s) 369
Psp6I CCWGG 2 cut(s) 528, 642
PspGI CCWGG 2 cut(s) 528, 642
PspN4I GGNNCC 2 cut(s) 418, 534
PvuII CAGCTG 1 cut(s) 521
RsaI GTAC 3 cut(s) 262, 412, 598
RsaNI GTAC 3 cut(s) 261, 411, 597
SaqAI TTAA 5 cut(s) 141, 369, 392, 449, 461
SatI GCNGC 2 cut(s) 457, 631
Sau3AI GATC 2 cut(s) 146, 342
ScrFI CCNGG 2 cut(s) 530, 644
SfaNI GCATC 3 cut(s) 65, 117, 214
SfcI CTRYAG 1 cut(s) 624
SfuI TTCGAA 1 cut(s) 83
SmlI CTYRAG 1 cut(s) 448
SmoI CTYRAG 1 cut(s) 448
SpeI ACTAGT 2 cut(s) 263, 512
SphI GCATGC 1 cut(s) 245
Sse9I AATT 4 cut(s) 85, 347, 366, 569
SsiI CCGC 3 cut(s) 73, 99, 457
SspMI CTAG 3 cut(s) 264, 513, 575
StyD4I CCNGG 2 cut(s) 528, 642
TaaI ACNGT 2 cut(s) 338, 699
TaiI ACGT 1 cut(s) 446
TaqI TCGA 2 cut(s) 83, 560
TasI AATT 4 cut(s) 85, 347, 366, 569
TatI WGTACW 2 cut(s) 260, 596
TauI GCSGC 1 cut(s) 459
Tru1I TTAA 5 cut(s) 141, 369, 392, 449, 461
Tru9I TTAA 5 cut(s) 141, 369, 392, 449, 461
TscAI CASTG 1 cut(s) 58
TseFI GTSAC 1 cut(s) 132
TseI GCWGC 1 cut(s) 630
Tsp45I GTSAC 1 cut(s) 132
TspDTI ATGAA 1 cut(s) 600
TspRI CASTG 1 cut(s) 58
Vha464I CTTAAG 1 cut(s) 448
VspI ATTAAT 1 cut(s) 369
XapI RAATTY 1 cut(s) 347
XceI RCATGY 2 cut(s) 140, 245
XspI CTAG 3 cut(s) 264, 513, 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.