Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001032

Physical Location & Seq

Genomic Coordinates Reverse (-)

28321792 .. 28324955

Gene Structure 3164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G319500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGGTCATGCGTCTCTAATTTTGCTGCTGCTTATCAATTCACTGGTCCCTTTCTCCTCCGGTAAACCTGACAAAGTATGCACTTCCCAAGGTGGTCGTTTCCCACCATTCTCTTATGAGGGAAAGCCTCCACGACGGGTGAACAAGGGACCCAAAGATCTGACCCTTTGCAGGGTGTTCCGCAAAAAAACTTGCTGTGATGTATCCCAGACACATCCTGCACTGGTATCCGTAAGGAAGTTGGCTTCAACTGGAGAAGCTAACCCAGAGTGCTTGCAATTATGGGAATTACTGGAATGTTCCATCTGCGATCCCCGCATTGGCGTGCAGCCAGGACCTCCAGTTATATGTGCCTCTTTCTGTGACAGGGTCTTTAAGGCTTGTGCTGAGGCTTACTACTCTACGGATGCAATAACACAGGTTCTAGCACCATGTGGAGTAAATGATTATGTTTGTGGTAGAGCCTCTGAATGGATCGTTAATGGCACAGAGTTCTGCCATGCTGCAGGGTTTGCCGTTAAAGATGATATAACTGTGAGAAAGAGAGAAGCATTTTGCTATGGTGGTAAAGCCAGTCTTGATTTGATTTCTGATTCATGGAAGGTTTCACAGTCTGAGGTGCCCCAGAAAGTTGAGAGGTTGAGGCTGCTAGAGGAGTTCCAGCAGAGGTGGAGGGAAATGCCATTTAGTGAAAGAGTTTCTTGGGCCGTGGGAGGATTGGTTCTTACAGCAGGCCTGTTGTTTGTAAGCAAAAGGAAAAGCCGTCACCAGCGCCACAAGCTAGCTGCTTTAAAACACTATAAGAAACTTGAAGCCAAGATGAGCCAGAAATCTCCTAGTAGTCCAGGAAATAGGAAAAGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Folate_rec

Protein Analysis

289

Amino Acids

32.02

Weight (kDa)

9.4

Isoelectric Point (pI)

53.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27830 AT5G27830 AT5G27830 AT5G27830 AT5G27830 AT5G27830
fragaria_vesca	FvH4_6g06800 FvH4_6g06800 FvH4_6g06800
malus_domestica	MD04G1198500.v1.1
prunus_persica	Prupe.6G319500_v2.0.a1
pyrus_communis	pycom04g17560 pycom12g19820
rosa_chinensis	RchiOBHm_Chr2g0123281 RchiOBHm_Chr3g0456161 RchiOBHm_Chr3g0458101 RchiOBHm_Chr4g0442861 RchiOBHm_Chr4g0442871 RchiOBHm_Chr4g0442951
rosa_laevigata	RLG00000005970 RLG00000010014
rosa_multiflora	Rmu_sc0000121.1_g000021 Rmu_sc0000124.1_g000039 Rmu_sc0000279.1_g000039 Rmu_sc0000384.1_g000020 Rmu_sc0001917.1_g000005 Rmu_sc0002607.1_g000043 Rmu_sc0007295.1_g000002 Rmu_sc0042689.1_g000001
rosa_roxburghii	Rroxscaffold_6G00423260 Rroxscaffold_6G00423720
rosa_rugosa	Rorug03G0012000 Rorug03G0012100 Rorug04G0109700 Rorug04G0343700
rosa_samantha	Rh1CG037400 Rh2BG184700 Rh2BG311600 Rh3AG072300 Rh3AG085600 Rh3BG074200 Rh3BG088300 Rh3CG073700 Rh3DG075500 Rh3DG089200 Rh4AG396600 Rh4AG396900 Rh4AG397000 Rh4AG397400 Rh4AG397800 Rh4BG409300 Rh4CG424800 Rh4DG403200 Rh4DG403500 Rh4DG403600 Rh4DG404100 Rh5BG556500 Rh6BG383200
rosa_wichuraiana	Rw2G024280 Rw3G005860 Rw3G006140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	619
AciI	CCGC	2 cut(s)	181, 316
AclWI	GGATC	2 cut(s)	305, 482
AdeI	CACNNNGTG	1 cut(s)	434
AfiI	CCNNNNNNNGG	4 cut(s)	171, 172, 320, 471
AgsI	TTSAA	2 cut(s)	249, 812
AjnI	CCWGG	2 cut(s)	331, 844
AloI	GAACNNNNNNTCC	2 cut(s)	705, 737
AluBI	AGCT	3 cut(s)	260, 781, 785
AluI	AGCT	3 cut(s)	260, 781, 785
Alw26I	GTCTC	1 cut(s)	18
AlwI	GGATC	2 cut(s)	305, 482
AoxI	GGCC	2 cut(s)	705, 733
ApeKI	GCWGC	6 cut(s)	25, 28, 328, 503, 646, 785
AspLEI	GCGC	1 cut(s)	774
AspS9I	GGNCC	4 cut(s)	46, 149, 335, 705
AsuHPI	GGTGA	2 cut(s)	151, 758
AsuNHI	GCTAGC	1 cut(s)	781
AvaII	GGWCC	3 cut(s)	46, 149, 335
BaeGI	GKGCMC	1 cut(s)	624
BanI	GGYRCC	1 cut(s)	619
BbvCI	CCTCAGC	1 cut(s)	387
BbvI	GCAGC	6 cut(s)	12, 15, 340, 490, 633, 772
BccI	CCATC	1 cut(s)	311
BceAI	ACGGC	3 cut(s)	500, 692, 747
BciT130I	CCWGG	2 cut(s)	333, 846
BciVI	GTATCC	2 cut(s)	214, 238
BcoDI	GTCTC	1 cut(s)	18
BfaI	CTAG	4 cut(s)	425, 650, 782, 837
BfmI	CTRYAG	1 cut(s)	504
BfoI	RGCGCY	1 cut(s)	775
BfuI	GTATCC	2 cut(s)	214, 238
BglII	AGATCT	1 cut(s)	157
BisI	GCNGC	6 cut(s)	26, 29, 329, 504, 647, 786
BlsI	GCNGC	6 cut(s)	27, 30, 330, 505, 648, 787
Bme1390I	CCNGG	2 cut(s)	333, 846
Bme18I	GGWCC	3 cut(s)	46, 149, 335
BmgT120I	GGNCC	4 cut(s)	46, 149, 335, 705
BmiI	GGNNCC	4 cut(s)	48, 150, 151, 621
BmrFI	CCNGG	2 cut(s)	333, 846
BmsI	GCATC	1 cut(s)	397
BmtI	GCTAGC	1 cut(s)	785
BpmI	CTGGAG	2 cut(s)	273, 324
Bpu10I	CCTNAGC	1 cut(s)	387
BsaJI	CCNNGG	2 cut(s)	88, 708
BsaWI	WCCGGW	1 cut(s)	59
BsaXI	ACNNNNNCTCC	2 cut(s)	705, 735
Bsc4I	CCNNNNNNNGG	4 cut(s)	171, 172, 320, 471
Bse1I	ACTGG	6 cut(s)	48, 228, 256, 297, 341, 573
BseBI	CCWGG	2 cut(s)	333, 846
BseDI	CCNNGG	2 cut(s)	88, 708
BseGI	GGATG	2 cut(s)	214, 412
BseLI	CCNNNNNNNGG	4 cut(s)	171, 172, 320, 471
BseMII	CTCAG	2 cut(s)	378, 606
BseNI	ACTGG	6 cut(s)	48, 228, 256, 297, 341, 573
BseRI	GAGGAG	2 cut(s)	46, 668
BseSI	GKGCMC	1 cut(s)	624
BseXI	GCAGC	6 cut(s)	12, 15, 340, 490, 633, 772
BsgI	GTGCAG	2 cut(s)	204, 347
BshFI	GGCC	2 cut(s)	707, 735
BshNI	GGYRCC	1 cut(s)	619
BsiSI	CCGG	1 cut(s)	60
BslFI	GGGAC	2 cut(s)	32, 162
BslI	CCNNNNNNNGG	4 cut(s)	171, 172, 320, 471
BsmAI	GTCTC	1 cut(s)	18
BsmBI	CGTCTC	1 cut(s)	18
BsmFI	GGGAC	2 cut(s)	32, 162
BsnI	GGCC	2 cut(s)	707, 735
Bsp1286I	GDGCHC	1 cut(s)	624
Bsp143I	GATC	3 cut(s)	157, 310, 474
BspACI	CCGC	2 cut(s)	181, 316
BspANI	GGCC	2 cut(s)	707, 735
BspCNI	CTCAG	2 cut(s)	379, 607
BspLI	GGNNCC	4 cut(s)	48, 150, 151, 621
BspMAI	CTGCAG	1 cut(s)	508
BspOI	GCTAGC	1 cut(s)	785
BspPI	GGATC	2 cut(s)	305, 482
BspT107I	GGYRCC	1 cut(s)	619
BsrI	ACTGG	6 cut(s)	48, 228, 256, 297, 341, 573
BssECI	CCNNGG	2 cut(s)	88, 708
BssMI	GATC	3 cut(s)	157, 310, 474
BssT1I	CCWWGG	1 cut(s)	88
Bst2UI	CCWGG	2 cut(s)	333, 846
Bst4CI	ACNGT	2 cut(s)	535, 612
BstAPI	GCANNNNNTGC	1 cut(s)	512
BstC8I	GCNNGC	4 cut(s)	275, 326, 733, 783
BstDEI	CTNAG	2 cut(s)	387, 615
BstDSI	CCRYGG	1 cut(s)	708
BstF5I	GGATG	2 cut(s)	214, 412
BstH2I	RGCGCY	1 cut(s)	775
BstHHI	GCGC	1 cut(s)	774
BstKTI	GATC	3 cut(s)	160, 313, 477
BstMAI	GTCTC	1 cut(s)	18
BstMBI	GATC	3 cut(s)	157, 310, 474
BstMWI	GCNNNNNNNGC	3 cut(s)	315, 512, 778
BstNI	CCWGG	2 cut(s)	333, 846
BstSCI	CCNGG	2 cut(s)	331, 844
BstSFI	CTRYAG	1 cut(s)	504
BstSLI	GKGCMC	1 cut(s)	624
BstV1I	GCAGC	6 cut(s)	12, 15, 340, 490, 633, 772
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BsuI	GTATCC	2 cut(s)	214, 238
BsuRI	GGCC	2 cut(s)	707, 735
BtgI	CCRYGG	1 cut(s)	708
BtsCI	GGATG	2 cut(s)	214, 412
BtsIMutI	CAGTG	2 cut(s)	41, 221
Cac8I	GCNNGC	4 cut(s)	275, 326, 733, 783
CfoI	GCGC	1 cut(s)	774
Cfr13I	GGNCC	4 cut(s)	46, 149, 335, 705
CviAII	CATG	4 cut(s)	8, 432, 500, 597
DdeI	CTNAG	2 cut(s)	387, 615
DpnI	GATC	3 cut(s)	159, 312, 476
DpnII	GATC	3 cut(s)	157, 310, 474
DraI	TTTAAA	1 cut(s)	792
DraIII	CACNNNGTG	1 cut(s)	434
Eco130I	CCWWGG	1 cut(s)	88
Eco147I	AGGCCT	1 cut(s)	735
Eco47I	GGWCC	3 cut(s)	46, 149, 335
EcoO109I	RGGNCCY	2 cut(s)	149, 335
EcoRII	CCWGG	2 cut(s)	331, 844
EcoT14I	CCWWGG	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	88
Esp3I	CGTCTC	1 cut(s)	18
FaeI	CATG	4 cut(s)	11, 435, 503, 600
FalI	AAGNNNNNCTT	4 cut(s)	561, 593, 685, 717
FaqI	GGGAC	2 cut(s)	32, 162
FatI	CATG	4 cut(s)	7, 431, 499, 596
FauI	CCCGC	1 cut(s)	323
Fnu4HI	GCNGC	6 cut(s)	26, 29, 329, 504, 647, 786
FokI	GGATG	2 cut(s)	201, 419
Fsp4HI	GCNGC	6 cut(s)	26, 29, 329, 504, 647, 786
FspBI	CTAG	4 cut(s)	425, 650, 782, 837
GlaI	GCGC	1 cut(s)	773
GluI	GCNGC	6 cut(s)	26, 29, 329, 504, 647, 786
GsuI	CTGGAG	2 cut(s)	273, 324
HaeII	RGCGCY	1 cut(s)	775
HaeIII	GGCC	2 cut(s)	707, 735
HapII	CCGG	1 cut(s)	60
HhaI	GCGC	1 cut(s)	774
Hin1II	CATG	4 cut(s)	11, 435, 503, 600
Hin6I	GCGC	1 cut(s)	772
HinP1I	GCGC	1 cut(s)	772
HinfI	GANTC	1 cut(s)	593
HpaII	CCGG	1 cut(s)	60
HphI	GGTGA	2 cut(s)	151, 758
Hpy166II	GTNNAC	2 cut(s)	65, 142
Hpy188I	TCNGA	4 cut(s)	162, 469, 592, 616
Hpy188III	TCNNGA	1 cut(s)	578
Hpy8I	GTNNAC	2 cut(s)	65, 142
Hpy99I	CGWCG	1 cut(s)	138
HpyAV	CCTTC	1 cut(s)	595
HpyCH4III	ACNGT	2 cut(s)	535, 612
HpyCH4V	TGCA	7 cut(s)	81, 171, 221, 277, 328, 410, 506
HpyF10VI	GCNNNNNNNGC	3 cut(s)	315, 512, 778
HpyF3I	CTNAG	2 cut(s)	387, 615
Hsp92II	CATG	4 cut(s)	11, 435, 503, 600
HspAI	GCGC	1 cut(s)	772
KflI	GGGWCCC	1 cut(s)	149
Kzo9I	GATC	3 cut(s)	157, 310, 474
Lsp1109I	GCAGC	6 cut(s)	12, 15, 340, 490, 633, 772
LweI	GCATC	1 cut(s)	397
MaeI	CTAG	4 cut(s)	425, 650, 782, 837
MaeIII	GTNAC	2 cut(s)	362, 764
MalI	GATC	3 cut(s)	159, 312, 476
MboI	GATC	3 cut(s)	157, 310, 474
MflI	RGATCY	1 cut(s)	157
MhlI	GDGCHC	1 cut(s)	624
MluCI	AATT	4 cut(s)	18, 37, 278, 287
MseI	TTAA	4 cut(s)	375, 480, 519, 791
MslI	CAYNNNNRTG	1 cut(s)	323
MspI	CCGG	1 cut(s)	60
MspR9I	CCNGG	2 cut(s)	333, 846
MvaI	CCWGG	2 cut(s)	333, 846
MwoI	GCNNNNNNNGC	3 cut(s)	315, 512, 778
NdeII	GATC	3 cut(s)	157, 310, 474
NheI	GCTAGC	1 cut(s)	781
NlaIII	CATG	4 cut(s)	11, 435, 503, 600
NlaIV	GGNNCC	4 cut(s)	48, 150, 151, 621
NmuCI	GTSAC	2 cut(s)	362, 764
PceI	AGGCCT	1 cut(s)	735
PfeI	GAWTC	1 cut(s)	593
PflFI	GACNNNGTC	1 cut(s)	368
PfoI	TCCNGGA	1 cut(s)	844
PkrI	GCNGC	6 cut(s)	27, 30, 330, 505, 648, 787
PpuMI	RGGWCCY	2 cut(s)	149, 335
Psp5II	RGGWCCY	2 cut(s)	149, 335
Psp6I	CCWGG	2 cut(s)	331, 844
PspGI	CCWGG	2 cut(s)	331, 844
PspN4I	GGNNCC	4 cut(s)	48, 150, 151, 621
PspPI	GGNCC	4 cut(s)	46, 149, 335, 705
PspPPI	RGGWCCY	2 cut(s)	149, 335
PstI	CTGCAG	1 cut(s)	508
PsuI	RGATCY	1 cut(s)	157
PsyI	GACNNNGTC	1 cut(s)	368
RseI	CAYNNNNRTG	1 cut(s)	323
SaqAI	TTAA	4 cut(s)	375, 480, 519, 791
SatI	GCNGC	6 cut(s)	26, 29, 329, 504, 647, 786
Sau3AI	GATC	3 cut(s)	157, 310, 474
Sau96I	GGNCC	4 cut(s)	46, 149, 335, 705
ScrFI	CCNGG	2 cut(s)	333, 846
SduI	GDGCHC	1 cut(s)	624
SfaNI	GCATC	1 cut(s)	397
SfcI	CTRYAG	1 cut(s)	504
SinI	GGWCC	3 cut(s)	46, 149, 335
SmiMI	CAYNNNNRTG	1 cut(s)	323
Sse9I	AATT	4 cut(s)	18, 37, 278, 287
SseBI	AGGCCT	1 cut(s)	735
SsiI	CCGC	2 cut(s)	181, 316
SspMI	CTAG	4 cut(s)	425, 650, 782, 837
StuI	AGGCCT	1 cut(s)	735
StyD4I	CCNGG	2 cut(s)	331, 844
StyI	CCWWGG	1 cut(s)	88
TaaI	ACNGT	2 cut(s)	535, 612
TasI	AATT	4 cut(s)	18, 37, 278, 287
TfiI	GAWTC	1 cut(s)	593
Tru1I	TTAA	4 cut(s)	375, 480, 519, 791
Tru9I	TTAA	4 cut(s)	375, 480, 519, 791
TscAI	CASTG	2 cut(s)	48, 228
TseFI	GTSAC	2 cut(s)	362, 764
TseI	GCWGC	6 cut(s)	25, 28, 328, 503, 646, 785
Tsp45I	GTSAC	2 cut(s)	362, 764
TspDTI	ATGAA	1 cut(s)	585
TspGWI	ACGGA	2 cut(s)	220, 419
TspRI	CASTG	2 cut(s)	48, 228
Tth111I	GACNNNGTC	1 cut(s)	368
VpaK11BI	GGWCC	3 cut(s)	46, 149, 335
XspI	CTAG	4 cut(s)	425, 650, 782, 837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.