Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001032

Physical Location & Seq

Genomic Coordinates Reverse (-)

5764971 .. 5768109

Gene Structure 3139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G006140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGGTTATGGTTATCTGATTTTTCTGCTTCTTATCAATACACTGATTCCTTTTTCTTCTGGTAAACCTGACAGAGTGTGCATTTCCCAAGGTAGTCGTTTTCCTCCATTCTCTTCTGAGGGAAAGCCTCCAAAACGGGTCAGCAAGGGACCCAAAGATCTGACTCTTTGCAGGGTGTTCAGCAAAAAGACTTGTTGTGATGTAGACCAGACACATCCTGCACTGCTAGCCATTAGGAAGTTGGCTTCGGCAGGGGAAGCTAACTCAGAGTGCTTGCAATTATGGGAATTATTGGAATGTTCTATCTGTGATCCCCGCATTGGTGTGCAGCCAGGACCTCCAGTTATATGTGCCTCTTTCTGTGACAGGGTCTTCAATGCTTGTTCTGGGGCTTACTACTCAACAGATGCAATAACACAGGTTCTAGCACCCTGTGGAGTAAACGATTATGTTTGTGGTAGGGCCTCGGAGTGGATTCTTAATGGCACAGAGTTCTGCCATGCTGCAGGGTTTGCTGTTAAGGGTGATATGTCTGAGAGCCTGGAAGAAACATTTTGCTATGGTGGTAAGGCTAGTCTTGATTTGATTGCGGATTCATGGAAGGTTTCACAATCTCAGGTGCCCCGGAAAGTTCAGAGCTTGAGGCTGCTAGAGGATTTCCAGCAGATAGTGAGGGAAATGCCATATAGCGAACGAGTTTCTTGGGCTGTGGGAGGATTGGTTCTTACAGCAGGCCTGTTGTTTGTAAGCAGAAGGAAAGGTTGTAACCAGCGCCACAGACAAGCCGCTTTACAGCGTACCACTAAGAAACTAGAAACCAAGATGTACCCGAAATCTGCTAATAGTCATGGAAATAGGAAACTAAGTAAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Folate_rec

Protein Analysis

291

Amino Acids

32.1

Weight (kDa)

9.07

Isoelectric Point (pI)

45.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Folate_rec	PF03024	48 - 169	3.6e-15	Folate receptor family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27830 AT5G27830 AT5G27830 AT5G27830 AT5G27830 AT5G27830
fragaria_vesca	FvH4_6g06800 FvH4_6g06800 FvH4_6g06800
malus_domestica	MD04G1198500.v1.1
prunus_persica	Prupe.6G319500_v2.0.a1
pyrus_communis	pycom04g17560 pycom12g19820
rosa_chinensis	RchiOBHm_Chr2g0123281 RchiOBHm_Chr3g0456161 RchiOBHm_Chr3g0458101 RchiOBHm_Chr4g0442861 RchiOBHm_Chr4g0442871 RchiOBHm_Chr4g0442951
rosa_laevigata	RLG00000005970 RLG00000010014
rosa_multiflora	Rmu_sc0000121.1_g000021 Rmu_sc0000124.1_g000039 Rmu_sc0000279.1_g000039 Rmu_sc0000384.1_g000020 Rmu_sc0001917.1_g000005 Rmu_sc0002607.1_g000043 Rmu_sc0007295.1_g000002 Rmu_sc0042689.1_g000001
rosa_roxburghii	Rroxscaffold_6G00423260 Rroxscaffold_6G00423720
rosa_rugosa	Rorug03G0012000 Rorug03G0012100 Rorug04G0109700 Rorug04G0343700
rosa_samantha	Rh1CG037400 Rh2BG184700 Rh2BG311600 Rh3AG072300 Rh3AG085600 Rh3BG074200 Rh3BG088300 Rh3CG073700 Rh3DG075500 Rh3DG089200 Rh4AG396600 Rh4AG396900 Rh4AG397000 Rh4AG397400 Rh4AG397800 Rh4BG409300 Rh4CG424800 Rh4DG403200 Rh4DG403500 Rh4DG403600 Rh4DG404100 Rh5BG556500 Rh6BG383200
rosa_wichuraiana	Rw2G024280 Rw3G005860 Rw3G006140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	619
AccI	GTMKAC	1 cut(s)	204
AciI	CCGC	3 cut(s)	316, 590, 786
AclWI	GGATC	1 cut(s)	305
AdeI	CACNNNGTG	1 cut(s)	434
AfaI	GTAC	2 cut(s)	799, 827
AfiI	CCNNNNNNNGG	2 cut(s)	320, 471
AgsI	TTSAA	1 cut(s)	376
AjnI	CCWGG	2 cut(s)	331, 540
AloI	GAACNNNNNNTCC	2 cut(s)	705, 737
AluBI	AGCT	2 cut(s)	260, 639
AluI	AGCT	2 cut(s)	260, 639
AlwI	GGATC	1 cut(s)	305
AoxI	GGCC	2 cut(s)	462, 733
ApeKI	GCWGC	3 cut(s)	328, 503, 646
AspLEI	GCGC	1 cut(s)	774
AspS9I	GGNCC	3 cut(s)	149, 335, 462
AsuC2I	CCSGG	1 cut(s)	625
AsuHPI	GGTGA	1 cut(s)	536
AsuNHI	GCTAGC	1 cut(s)	226
AvaII	GGWCC	2 cut(s)	149, 335
BaeGI	GKGCMC	1 cut(s)	624
BanI	GGYRCC	1 cut(s)	619
BbsI	GAAGAC	1 cut(s)	364
BbvI	GCAGC	3 cut(s)	340, 490, 633
BciT130I	CCWGG	2 cut(s)	333, 542
BcnI	CCSGG	1 cut(s)	625
BfaI	CTAG	5 cut(s)	227, 425, 573, 650, 812
BfmI	CTRYAG	1 cut(s)	504
BfoI	RGCGCY	1 cut(s)	775
BglII	AGATCT	1 cut(s)	157
BisI	GCNGC	4 cut(s)	329, 504, 647, 786
BlsI	GCNGC	4 cut(s)	330, 505, 648, 787
Bme1390I	CCNGG	3 cut(s)	333, 542, 625
Bme18I	GGWCC	2 cut(s)	149, 335
BmgT120I	GGNCC	3 cut(s)	149, 335, 462
BmiI	GGNNCC	3 cut(s)	150, 151, 621
BmrFI	CCNGG	3 cut(s)	333, 542, 625
BmsI	GCATC	1 cut(s)	397
BmtI	GCTAGC	1 cut(s)	230
BpiI	GAAGAC	1 cut(s)	364
BpmI	CTGGAG	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	661
BpuMI	CCSGG	1 cut(s)	625
BsaJI	CCNNGG	3 cut(s)	88, 465, 623
BsaXI	ACNNNNNCTCC	2 cut(s)	705, 735
Bsc4I	CCNNNNNNNGG	2 cut(s)	320, 471
Bse1I	ACTGG	1 cut(s)	341
BseBI	CCWGG	2 cut(s)	333, 542
BseDI	CCNNGG	3 cut(s)	88, 465, 623
BseGI	GGATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	2 cut(s)	320, 471
BseMII	CTCAG	4 cut(s)	108, 279, 525, 629
BseNI	ACTGG	1 cut(s)	341
BseSI	GKGCMC	1 cut(s)	624
BseXI	GCAGC	3 cut(s)	340, 490, 633
BsgI	GTGCAG	2 cut(s)	204, 347
BshFI	GGCC	2 cut(s)	464, 735
BshNI	GGYRCC	1 cut(s)	619
BsiSI	CCGG	1 cut(s)	625
BslFI	GGGAC	1 cut(s)	162
BslI	CCNNNNNNNGG	2 cut(s)	320, 471
BsmFI	GGGAC	1 cut(s)	162
BsnI	GGCC	2 cut(s)	464, 735
Bsp1286I	GDGCHC	1 cut(s)	624
Bsp143I	GATC	2 cut(s)	157, 310
BspACI	CCGC	3 cut(s)	316, 590, 786
BspANI	GGCC	2 cut(s)	464, 735
BspCNI	CTCAG	4 cut(s)	109, 278, 526, 628
BspLI	GGNNCC	3 cut(s)	150, 151, 621
BspMAI	CTGCAG	1 cut(s)	508
BspOI	GCTAGC	1 cut(s)	230
BspPI	GGATC	1 cut(s)	305
BspT107I	GGYRCC	1 cut(s)	619
BsrI	ACTGG	1 cut(s)	341
BssECI	CCNNGG	3 cut(s)	88, 465, 623
BssMI	GATC	2 cut(s)	157, 310
BssT1I	CCWWGG	1 cut(s)	88
Bst2UI	CCWGG	2 cut(s)	333, 542
Bst6I	CTCTTC	1 cut(s)	118
BstAPI	GCANNNNNTGC	1 cut(s)	512
BstC8I	GCNNGC	3 cut(s)	228, 275, 733
BstDEI	CTNAG	6 cut(s)	117, 265, 534, 615, 804, 863
BstF5I	GGATG	1 cut(s)	214
BstH2I	RGCGCY	1 cut(s)	775
BstHHI	GCGC	1 cut(s)	774
BstKTI	GATC	2 cut(s)	160, 313
BstMBI	GATC	2 cut(s)	157, 310
BstMWI	GCNNNNNNNGC	3 cut(s)	227, 257, 512
BstNI	CCWGG	2 cut(s)	333, 542
BstSCI	CCNGG	3 cut(s)	331, 540, 623
BstSFI	CTRYAG	1 cut(s)	504
BstSLI	GKGCMC	1 cut(s)	624
BstV1I	GCAGC	3 cut(s)	340, 490, 633
BstV2I	GAAGAC	1 cut(s)	364
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BsuRI	GGCC	2 cut(s)	464, 735
BtsCI	GGATG	1 cut(s)	214
BtsI	GCAGTG	1 cut(s)	221
BtsIMutI	CAGTG	2 cut(s)	41, 221
Cac8I	GCNNGC	3 cut(s)	228, 275, 733
CfoI	GCGC	1 cut(s)	774
Cfr13I	GGNCC	3 cut(s)	149, 335, 462
Csp6I	GTAC	2 cut(s)	798, 826
CviAII	CATG	3 cut(s)	500, 597, 848
CviQI	GTAC	2 cut(s)	798, 826
DdeI	CTNAG	6 cut(s)	117, 265, 534, 615, 804, 863
DpnI	GATC	2 cut(s)	159, 312
DpnII	GATC	2 cut(s)	157, 310
DraIII	CACNNNGTG	1 cut(s)	434
Eam1104I	CTCTTC	1 cut(s)	118
EarI	CTCTTC	1 cut(s)	118
Eco130I	CCWWGG	1 cut(s)	88
Eco147I	AGGCCT	1 cut(s)	735
Eco47I	GGWCC	2 cut(s)	149, 335
EcoO109I	RGGNCCY	3 cut(s)	149, 335, 462
EcoRII	CCWGG	2 cut(s)	331, 540
EcoT14I	CCWWGG	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	3 cut(s)	503, 600, 851
FaqI	GGGAC	1 cut(s)	162
FatI	CATG	3 cut(s)	499, 596, 847
FauI	CCCGC	1 cut(s)	323
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	4 cut(s)	329, 504, 647, 786
FokI	GGATG	1 cut(s)	201
Fsp4HI	GCNGC	4 cut(s)	329, 504, 647, 786
FspBI	CTAG	5 cut(s)	227, 425, 573, 650, 812
GlaI	GCGC	1 cut(s)	773
GluI	GCNGC	4 cut(s)	329, 504, 647, 786
GsuI	CTGGAG	1 cut(s)	324
HaeII	RGCGCY	1 cut(s)	775
HaeIII	GGCC	2 cut(s)	464, 735
HapII	CCGG	1 cut(s)	625
HhaI	GCGC	1 cut(s)	774
Hin1II	CATG	3 cut(s)	503, 600, 851
Hin6I	GCGC	1 cut(s)	772
HinP1I	GCGC	1 cut(s)	772
HinfI	GANTC	4 cut(s)	46, 163, 475, 593
HpaII	CCGG	1 cut(s)	625
HphI	GGTGA	1 cut(s)	536
Hpy166II	GTNNAC	3 cut(s)	65, 205, 442
Hpy188I	TCNGA	7 cut(s)	18, 118, 162, 268, 469, 535, 636
Hpy188III	TCNNGA	1 cut(s)	578
Hpy8I	GTNNAC	3 cut(s)	65, 205, 442
HpyAV	CCTTC	2 cut(s)	595, 747
HpyCH4V	TGCA	7 cut(s)	81, 171, 221, 277, 328, 410, 506
HpyF10VI	GCNNNNNNNGC	3 cut(s)	227, 257, 512
HpyF3I	CTNAG	6 cut(s)	117, 265, 534, 615, 804, 863
Hsp92II	CATG	3 cut(s)	503, 600, 851
HspAI	GCGC	1 cut(s)	772
KflI	GGGWCCC	1 cut(s)	149
Kzo9I	GATC	2 cut(s)	157, 310
Lsp1109I	GCAGC	3 cut(s)	340, 490, 633
LweI	GCATC	1 cut(s)	397
MaeI	CTAG	5 cut(s)	227, 425, 573, 650, 812
MaeIII	GTNAC	2 cut(s)	362, 764
MalI	GATC	2 cut(s)	159, 312
MboI	GATC	2 cut(s)	157, 310
MboII	GAAGA	4 cut(s)	48, 105, 364, 557
MflI	RGATCY	1 cut(s)	157
MhlI	GDGCHC	1 cut(s)	624
MluCI	AATT	2 cut(s)	278, 287
MlyI	GAGTC	1 cut(s)	157
MseI	TTAA	2 cut(s)	480, 519
MslI	CAYNNNNRTG	1 cut(s)	323
MspI	CCGG	1 cut(s)	625
MspR9I	CCNGG	3 cut(s)	333, 542, 625
MvaI	CCWGG	2 cut(s)	333, 542
MwoI	GCNNNNNNNGC	3 cut(s)	227, 257, 512
NciI	CCSGG	1 cut(s)	625
NdeII	GATC	2 cut(s)	157, 310
NheI	GCTAGC	1 cut(s)	226
NlaIII	CATG	3 cut(s)	503, 600, 851
NlaIV	GGNNCC	3 cut(s)	150, 151, 621
NmuCI	GTSAC	1 cut(s)	362
PceI	AGGCCT	1 cut(s)	735
PfeI	GAWTC	3 cut(s)	46, 475, 593
PflFI	GACNNNGTC	1 cut(s)	368
PkrI	GCNGC	4 cut(s)	330, 505, 648, 787
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
PpuMI	RGGWCCY	2 cut(s)	149, 335
Psp5II	RGGWCCY	2 cut(s)	149, 335
Psp6I	CCWGG	2 cut(s)	331, 540
PspGI	CCWGG	2 cut(s)	331, 540
PspN4I	GGNNCC	3 cut(s)	150, 151, 621
PspPI	GGNCC	3 cut(s)	149, 335, 462
PspPPI	RGGWCCY	2 cut(s)	149, 335
PstI	CTGCAG	1 cut(s)	508
PsuI	RGATCY	1 cut(s)	157
PsyI	GACNNNGTC	1 cut(s)	368
RsaI	GTAC	2 cut(s)	799, 827
RsaNI	GTAC	2 cut(s)	798, 826
RseI	CAYNNNNRTG	1 cut(s)	323
SaqAI	TTAA	2 cut(s)	480, 519
SatI	GCNGC	4 cut(s)	329, 504, 647, 786
Sau3AI	GATC	2 cut(s)	157, 310
Sau96I	GGNCC	3 cut(s)	149, 335, 462
SchI	GAGTC	1 cut(s)	157
ScrFI	CCNGG	3 cut(s)	333, 542, 625
SduI	GDGCHC	1 cut(s)	624
SetI	ASST	9 cut(s)	70, 94, 262, 340, 423, 606, 621, 641, 763
SfaNI	GCATC	1 cut(s)	397
SfcI	CTRYAG	1 cut(s)	504
SinI	GGWCC	2 cut(s)	149, 335
SmiMI	CAYNNNNRTG	1 cut(s)	323
SmlI	CTYRAG	1 cut(s)	640
SmoI	CTYRAG	1 cut(s)	640
Sse9I	AATT	2 cut(s)	278, 287
SseBI	AGGCCT	1 cut(s)	735
SsiI	CCGC	3 cut(s)	316, 590, 786
SspMI	CTAG	5 cut(s)	227, 425, 573, 650, 812
StuI	AGGCCT	1 cut(s)	735
StyD4I	CCNGG	3 cut(s)	331, 540, 623
StyI	CCWWGG	1 cut(s)	88
TasI	AATT	2 cut(s)	278, 287
TauI	GCSGC	1 cut(s)	788
TfiI	GAWTC	3 cut(s)	46, 475, 593
Tru1I	TTAA	2 cut(s)	480, 519
Tru9I	TTAA	2 cut(s)	480, 519
TscAI	CASTG	2 cut(s)	48, 228
TseFI	GTSAC	1 cut(s)	362
TseI	GCWGC	3 cut(s)	328, 503, 646
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	1 cut(s)	585
TspRI	CASTG	2 cut(s)	48, 228
Tth111I	GACNNNGTC	1 cut(s)	368
VpaK11BI	GGWCC	2 cut(s)	149, 335
XcmI	CCANNNNNNNNNTGG	1 cut(s)	238
XmiI	GTMKAC	1 cut(s)	204
XspI	CTAG	5 cut(s)	227, 425, 573, 650, 812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.