Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001032

Physical Location & Seq

Genomic Coordinates Forward (+)

88562884 .. 88574256

Gene Structure 11373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG556500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGCATATGGAACAAGGGTCTGATTCAGTTGAGTTTTACGTTGGGGCTTTGTTCGAGAAATTGCCTGCTAAACAGTTCGAGGATATTCCTATTTGGAAGAGTTCTGGAAGACCTTCAAACCAAAGTTTTATGATGCAGACAGATGTTAAGAGATCAAAACTTCCTTCAGATGCAGCTGACATTGTGATGGAAGATGTCCCATTATTGACAAATCTTCTGCAATATCATGATGCTAAGGTTTGGAGCATGCTTCTGTATGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

87

Amino Acids

9.98

Weight (kDa)

4.91

Isoelectric Point (pI)

55.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27830 AT5G27830 AT5G27830 AT5G27830 AT5G27830 AT5G27830
fragaria_vesca	FvH4_6g06800 FvH4_6g06800 FvH4_6g06800
malus_domestica	MD04G1198500.v1.1
prunus_persica	Prupe.6G319500_v2.0.a1
pyrus_communis	pycom04g17560 pycom12g19820
rosa_chinensis	RchiOBHm_Chr2g0123281 RchiOBHm_Chr3g0456161 RchiOBHm_Chr3g0458101 RchiOBHm_Chr4g0442861 RchiOBHm_Chr4g0442871 RchiOBHm_Chr4g0442951
rosa_laevigata	RLG00000005970 RLG00000010014
rosa_multiflora	Rmu_sc0000121.1_g000021 Rmu_sc0000124.1_g000039 Rmu_sc0000279.1_g000039 Rmu_sc0000384.1_g000020 Rmu_sc0001917.1_g000005 Rmu_sc0002607.1_g000043 Rmu_sc0007295.1_g000002 Rmu_sc0042689.1_g000001
rosa_roxburghii	Rroxscaffold_6G00423260 Rroxscaffold_6G00423720
rosa_rugosa	Rorug03G0012000 Rorug03G0012100 Rorug04G0109700 Rorug04G0343700
rosa_samantha	Rh1CG037400 Rh2BG184700 Rh2BG311600 Rh3AG072300 Rh3AG085600 Rh3BG074200 Rh3BG088300 Rh3CG073700 Rh3DG075500 Rh3DG089200 Rh4AG396600 Rh4AG396900 Rh4AG397000 Rh4AG397400 Rh4AG397800 Rh4BG409300 Rh4CG424800 Rh4DG403200 Rh4DG403500 Rh4DG403600 Rh4DG404100 Rh5BG556500 Rh6BG383200
rosa_wichuraiana	Rw2G024280 Rw3G005860 Rw3G006140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	150
AgsI	TTSAA	1 cut(s)	117
AluBI	AGCT	1 cut(s)	176
AluI	AGCT	1 cut(s)	176
ApeKI	GCWGC	1 cut(s)	173
Asp700I	GAANNNNTTC	1 cut(s)	112
BbsI	GAAGAC	1 cut(s)	115
BbvI	GCAGC	1 cut(s)	185
BccI	CCATC	1 cut(s)	181
BisI	GCNGC	1 cut(s)	174
BlsI	GCNGC	1 cut(s)	175
BmsI	GCATC	3 cut(s)	123, 160, 220
BpiI	GAAGAC	1 cut(s)	115
Bpu10I	CCTNAGC	1 cut(s)	234
BseXI	GCAGC	1 cut(s)	185
BslFI	GGGAC	1 cut(s)	182
BsmFI	GGGAC	1 cut(s)	182
Bsp143I	GATC	1 cut(s)	152
BspHI	TCATGA	1 cut(s)	226
BssMI	GATC	1 cut(s)	152
Bst4CI	ACNGT	1 cut(s)	75
Bst6I	CTCTTC	1 cut(s)	92
BstC8I	GCNNGC	2 cut(s)	66, 248
BstDEI	CTNAG	1 cut(s)	234
BstKTI	GATC	1 cut(s)	155
BstMBI	GATC	1 cut(s)	152
BstNSI	RCATGY	1 cut(s)	250
BstV1I	GCAGC	1 cut(s)	185
BstV2I	GAAGAC	1 cut(s)	115
Cac8I	GCNNGC	2 cut(s)	66, 248
CciI	TCATGA	1 cut(s)	226
CviAII	CATG	2 cut(s)	227, 247
CviJI	RGCY	2 cut(s)	47, 176
CviKI_1	RGCY	2 cut(s)	47, 176
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	1 cut(s)	154
DpnII	GATC	1 cut(s)	152
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	150
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	2 cut(s)	230, 250
FaiI	YATR	6 cut(s)	6, 8, 131, 228, 248, 258
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	2 cut(s)	226, 246
FauNDI	CATATG	1 cut(s)	6
Fnu4HI	GCNGC	1 cut(s)	174
Fsp4HI	GCNGC	1 cut(s)	174
GluI	GCNGC	1 cut(s)	174
Hin1II	CATG	2 cut(s)	230, 250
HinfI	GANTC	1 cut(s)	23
Hpy188I	TCNGA	3 cut(s)	22, 169, 263
Hpy188III	TCNNGA	3 cut(s)	55, 105, 227
HpyAV	CCTTC	2 cut(s)	123, 174
HpyCH4III	ACNGT	1 cut(s)	75
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	4 cut(s)	4, 136, 173, 220
HpyF3I	CTNAG	1 cut(s)	234
HpySE526I	ACGT	1 cut(s)	39
Hsp92II	CATG	2 cut(s)	230, 250
Kzo9I	GATC	1 cut(s)	152
LmnI	GCTCC	1 cut(s)	243
LpnPI	CCDG	2 cut(s)	78, 90
Lsp1109I	GCAGC	1 cut(s)	185
LweI	GCATC	3 cut(s)	123, 160, 220
MaeII	ACGT	1 cut(s)	39
MalI	GATC	1 cut(s)	154
MboI	GATC	1 cut(s)	152
MboII	GAAGA	4 cut(s)	109, 120, 203, 206
MluCI	AATT	1 cut(s)	59
MnlI	CCTC	1 cut(s)	73
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	112
MseI	TTAA	1 cut(s)	147
MslI	CAYNNNNRTG	1 cut(s)	185
MspA1I	CMGCKG	1 cut(s)	176
NdeI	CATATG	1 cut(s)	6
NdeII	GATC	1 cut(s)	152
NlaIII	CATG	2 cut(s)	230, 250
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	250
PaeI	GCATGC	1 cut(s)	250
PagI	TCATGA	1 cut(s)	226
PdmI	GAANNNNTTC	1 cut(s)	112
PfeI	GAWTC	1 cut(s)	23
PkrI	GCNGC	1 cut(s)	175
PvuII	CAGCTG	1 cut(s)	176
RseI	CAYNNNNRTG	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	1 cut(s)	174
Sau3AI	GATC	1 cut(s)	152
SetI	ASST	4 cut(s)	42, 115, 178, 240
SfaNI	GCATC	3 cut(s)	123, 160, 220
SgeI	CNNG	7 cut(s)	26, 67, 77, 91, 117, 239, 259
SmiMI	CAYNNNNRTG	1 cut(s)	185
SphI	GCATGC	1 cut(s)	250
Sse9I	AATT	1 cut(s)	59
TaaI	ACNGT	1 cut(s)	75
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	2 cut(s)	54, 78
TasI	AATT	1 cut(s)	59
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TseI	GCWGC	1 cut(s)	173
XceI	RCATGY	1 cut(s)	250
XmnI	GAANNNNTTC	1 cut(s)	112
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.