Rw2G024280

Folate receptor family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001032
Physical Location & Seq
Forward (+)
35839828 .. 35842111
2284 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G024280.1

Sequence Viewer

Length: 1491 bp
ATGAATGATCAGACAAACCCTCAAATTCTTCGCTCGCTTGCAAAGAACCTCAAAGCCCCAATGTCTTTTGATCTCAATAGGTCCAACTGCGGTGACGTCTCTCTCAAAATCCTCTCTGATTTGGTCTCCAAAGGGGTGTATGGTTATATGGTGAAGGATAAGGTGTCGCCGGATTTGTTTTCTTTTACTTGCTTGATTGATGGGTATTGTAAGGCTGGTAATTTGGAGGTTGCATTTGAATTGCTAGAGGGAATGAAGAAATCGTTATTTTTACCGAATGTGGTGACTTATAGTGCTTTGATTGATGGGCTGTGCAAGAATGGGAAGTTGGAAAGAGCTAAGCGTTTGTTTTGTGAAATGGTGGAACATGGGGTTCGGCCTAGTTCAGCGGTTTACACTTCAATGATAGATGGGCATTTCAAGAAAGGAAATGTAGATGAGGCCATGAAGTATATGAGTAAAATATGGGATGGAAGGGTTAGTCTTGATGCCGCTGCATATGGAGTGGTGGTCTCAGGCCTCTGTAATAATGGTCAGTTCGATAATGCGATGCGGGTTGTTACAGATGATTTCGCCATGAGTGGTTTTTCTCCAGATAAGATGTTGTTGACGACCATTATGGATGTATGTTTCAAAGCTGGCAATTTGAAAGCAGGTTTGGGTGTCTACAGATTGTTAGCAAAGGGTTTTGAACCAGATGCTTTGGTGCTTTCAGCTTTGATGGACGGCTTATGCAAGCATGGGCATTTCGAGGAGGCAAGAGGCTACTTTTGCAAGGAAAAGGCTAATGAGATTTCATATACTGTGCTCATTGATGGGATGTGTAAGGAAGAAAACTTTAGTGAAGTTGAGACGATCTTCATGATGTCCGAAATGGGGTTTATTCCAGACAAACATGTATACACTTCTTGGATTGCTGGGCTATGCAGACAGGGTAATCTGGTCGAGGCTTTGAGACTCAAGAATAAAATGGTTAAAGAGGGCATCAGCCCTGATCTCAAGGGACTCATGGTTGAAGCACAACAGGTTTTCGATGATATGTTGAAAAGAGGAATTACTCCTGACCGTCATGTCTTTGGTATTCTGATAAGAGGGTATTGTGATGAGGGTAATGATGTTGCCATTTTAGGTTTGCATGATGAAATGAGAAAGAGAGGACTTGTAGTCACAGGAGGCACACCCTGCACTGCTATCCATAAGAAAGTCGTCTTCAAGAGGGAAAGCTGGCTCAGAATTCTTGCAATTATGGAATTATTGGAATGTTCCATCTGCGGTCCTCGCATTGGTGTGGAGCAAGGACCTCCAGTTATATGTGCCTCGTTCTGTGACAGGGTCTTCAAGGCTTGTGCCGAGGCTTACTACTTGAGGGATGCAATAACACAGGCATCTGAGTGGATCCGTAATGACACAGAGTTATGCCATGCTGAGGTGTTTTCTGTGAAAGAATATACATCTGAGGGCATGGAAGAAACACTTTTCTATGGTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Folate_rec

Protein Analysis

496

Amino Acids

55.19

Weight (kDa)

5.84

Isoelectric Point (pI)

28.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 50 - 102 8.6e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 55 - 86 9.9e-12 PPR repeat
PPR_2 PF13041 57 - 106 2.4e-17 PPR repeat family
PPR PF01535 60 - 87 3.1e-07 PPR repeat
PPR_1 PF12854 91 - 121 1.3e-13 PPR repeat
PPR_2 PF13041 92 - 138 3.8e-16 PPR repeat family
PPR PF01535 95 - 125 1.5e-10 PPR repeat
TPR_24 PF23276 96 - 186 3.7e-06 Fungal tetratrico peptide repeats
PPR_long PF17177 111 - 227 4.6e-06 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 124 - 150 1e-05 PPR repeat
PPR_2 PF13041 127 - 176 1.2e-07 PPR repeat family
PPR_2 PF13041 263 - 310 1.7e-06 PPR repeat family
PPR_1 PF12854 292 - 325 3.5e-06 PPR repeat
PPR_2 PF13041 296 - 332 2e-07 PPR repeat family
PPR PF01535 300 - 329 8.3e-06 PPR repeat
PPR_2 PF13041 334 - 368 1.6e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1070
AatII GACGTC 1 cut(s) 99
Acc36I ACCTGC 1 cut(s) 644
AccI GTMKAC 2 cut(s) 666, 900
AciI CCGC 5 cut(s) 90, 389, 492, 553, 1272
AclWI GGATC 2 cut(s) 1390, 1403
AcsI RAATTY 2 cut(s) 24, 1233
AcyI GRCGYC 1 cut(s) 96
AfiI CCNNNNNNNGG 3 cut(s) 876, 1283, 1426
AflIII ACRYGT 1 cut(s) 895
AhdI GACNNNNNGTC 1 cut(s) 1163
AjuI GAANNNNNNNTTGG 4 cut(s) 311, 343, 641, 673
AluBI AGCT 4 cut(s) 338, 638, 716, 1224
AluI AGCT 4 cut(s) 338, 638, 716, 1224
Alw21I GWGCWC 1 cut(s) 810
Alw26I GTCTC 5 cut(s) 103, 130, 517, 845, 949
AlwI GGATC 2 cut(s) 1390, 1403
AoxI GGCC 3 cut(s) 377, 441, 517
ApeKI GCWGC 1 cut(s) 494
ApoI RAATTY 2 cut(s) 24, 1233
AspS9I GGNCC 3 cut(s) 81, 1274, 1298
AsuHPI GGTGA 3 cut(s) 104, 163, 295
AvaII GGWCC 3 cut(s) 81, 1274, 1298
BamHI GGATCC 1 cut(s) 1395
BbsI GAAGAC 2 cut(s) 1201, 1327
Bbv12I GWGCWC 1 cut(s) 810
BbvCI CCTCAGC 1 cut(s) 1425
BbvI GCAGC 1 cut(s) 481
BccI CCATC 7 cut(s) 194, 299, 404, 464, 715, 809, 1274
BceAI ACGGC 1 cut(s) 742
BclI TGATCA 1 cut(s) 7
BcoDI GTCTC 5 cut(s) 103, 130, 517, 845, 949
BfaI CTAG 2 cut(s) 245, 381
BfmI CTRYAG 1 cut(s) 667
BfuAI ACCTGC 1 cut(s) 644
BisI GCNGC 2 cut(s) 492, 495
BlpI GCTNAGC 1 cut(s) 339
BlsI GCNGC 2 cut(s) 493, 496
Bme18I GGWCC 3 cut(s) 81, 1274, 1298
BmeRI GACNNNNNGTC 1 cut(s) 1163
BmgT120I GGNCC 3 cut(s) 81, 1274, 1298
BmiI GGNNCC 1 cut(s) 1397
BmsI GCATC 6 cut(s) 478, 540, 688, 993, 1360, 1394
BpiI GAAGAC 2 cut(s) 1201, 1327
BpmI CTGGAG 2 cut(s) 576, 1287
Bpu10I CCTNAGC 1 cut(s) 1425
Bpu1102I GCTNAGC 1 cut(s) 339
BpuEI CTTGAG 3 cut(s) 944, 983, 1384
BsaHI GRCGYC 1 cut(s) 96
BsaI GGTCTC 2 cut(s) 130, 517
BsaJI CCNNGG 1 cut(s) 1350
BsaXI ACNNNNNCTCC 2 cut(s) 495, 525
Bsc4I CCNNNNNNNGG 3 cut(s) 876, 1283, 1426
Bse1I ACTGG 1 cut(s) 1304
BseDI CCNNGG 1 cut(s) 1350
BseGI GGATG 4 cut(s) 475, 628, 825, 1375
BseLI CCNNNNNNNGG 3 cut(s) 876, 1283, 1426
BseMII CTCAG 5 cut(s) 528, 1243, 1380, 1416, 1446
BseNI ACTGG 1 cut(s) 1304
BseRI GAGGAG 1 cut(s) 767
BseXI GCAGC 1 cut(s) 481
BseYI CCCAGC 1 cut(s) 917
BsgI GTGCAG 1 cut(s) 1168
BshFI GGCC 3 cut(s) 379, 443, 519
BsiHKAI GWGCWC 1 cut(s) 810
BsiSI CCGG 1 cut(s) 170
BslFI GGGAC 1 cut(s) 1017
BslI CCNNNNNNNGG 3 cut(s) 876, 1283, 1426
BsmAI GTCTC 5 cut(s) 103, 130, 517, 845, 949
BsmBI CGTCTC 2 cut(s) 103, 845
BsmFI GGGAC 1 cut(s) 1017
BsnI GGCC 3 cut(s) 379, 443, 519
Bso31I GGTCTC 2 cut(s) 130, 517
Bsp1286I GDGCHC 1 cut(s) 810
Bsp143I GATC 5 cut(s) 7, 70, 855, 994, 1395
Bsp1720I GCTNAGC 1 cut(s) 339
BspACI CCGC 5 cut(s) 90, 389, 492, 553, 1272
BspANI GGCC 3 cut(s) 379, 443, 519
BspCNI CTCAG 5 cut(s) 527, 1242, 1381, 1417, 1447
BspHI TCATGA 1 cut(s) 861
BspLI GGNNCC 1 cut(s) 1397
BspMI ACCTGC 1 cut(s) 644
BspPI GGATC 2 cut(s) 1390, 1403
BspTNI GGTCTC 2 cut(s) 130, 517
BsrI ACTGG 1 cut(s) 1304
BssECI CCNNGG 1 cut(s) 1350
BssMI GATC 5 cut(s) 7, 70, 855, 994, 1395
BssNAI GTATAC 1 cut(s) 901
BssNI GRCGYC 1 cut(s) 96
Bst1107I GTATAC 1 cut(s) 901
Bst4CI ACNGT 2 cut(s) 805, 1067
BstACI GRCGYC 1 cut(s) 96
BstAPI GCANNNNNTGC 1 cut(s) 1182
BstC8I GCNNGC 5 cut(s) 35, 39, 640, 737, 1226
BstDEI CTNAG 6 cut(s) 339, 514, 1229, 1389, 1425, 1455
BstF5I GGATG 4 cut(s) 475, 628, 825, 1375
BstKTI GATC 5 cut(s) 10, 73, 858, 997, 1398
BstMAI GTCTC 5 cut(s) 103, 130, 517, 845, 949
BstMBI GATC 5 cut(s) 7, 70, 855, 994, 1395
BstMWI GCNNNNNNNGC 3 cut(s) 771, 1182, 1278
BstNSI RCATGY 1 cut(s) 899
BstSFI CTRYAG 1 cut(s) 667
BstV1I GCAGC 1 cut(s) 481
BstV2I GAAGAC 2 cut(s) 1201, 1327
BstX2I RGATCY 1 cut(s) 1395
BstYI RGATCY 1 cut(s) 1395
BstZ17I GTATAC 1 cut(s) 901
BsuRI GGCC 3 cut(s) 379, 443, 519
BtgZI GCGATG 1 cut(s) 563
BtsCI GGATG 4 cut(s) 475, 628, 825, 1375
BtsI GCAGTG 1 cut(s) 1185
BtsIMutI CAGTG 1 cut(s) 1185
BveI ACCTGC 1 cut(s) 644
Cac8I GCNNGC 5 cut(s) 35, 39, 640, 737, 1226
CciI TCATGA 1 cut(s) 861
Cfr13I GGNCC 3 cut(s) 81, 1274, 1298
DdeI CTNAG 6 cut(s) 339, 514, 1229, 1389, 1425, 1455
DpnI GATC 5 cut(s) 9, 72, 857, 996, 1397
DpnII GATC 5 cut(s) 7, 70, 855, 994, 1395
DrdI GACNNNNNNGTC 1 cut(s) 1070
DriI GACNNNNNGTC 1 cut(s) 1163
DseDI GACNNNNNNGTC 1 cut(s) 1070
Eam1105I GACNNNNNGTC 1 cut(s) 1163
Eco147I AGGCCT 1 cut(s) 519
Eco31I GGTCTC 2 cut(s) 130, 517
Eco47I GGWCC 3 cut(s) 81, 1274, 1298
EcoO109I RGGNCCY 1 cut(s) 1298
EcoRI GAATTC 1 cut(s) 1233
Esp3I CGTCTC 2 cut(s) 103, 845
FalI AAGNNNNNCTT 2 cut(s) 1458, 1490
FaqI GGGAC 1 cut(s) 1017
FauI CCCGC 1 cut(s) 546
FauNDI CATATG 1 cut(s) 499
FbaI TGATCA 1 cut(s) 7
FblI GTMKAC 2 cut(s) 666, 900
Fnu4HI GCNGC 2 cut(s) 492, 495
FokI GGATG 4 cut(s) 482, 635, 832, 1382
Fsp4HI GCNGC 2 cut(s) 492, 495
FspBI CTAG 2 cut(s) 245, 381
GluI GCNGC 2 cut(s) 492, 495
GsaI CCCAGC 1 cut(s) 921
GsuI CTGGAG 2 cut(s) 576, 1287
HaeIII GGCC 3 cut(s) 379, 443, 519
HapII CCGG 1 cut(s) 170
Hin1I GRCGYC 1 cut(s) 96
HincII GTYRAC 1 cut(s) 609
HindII GTYRAC 1 cut(s) 609
HinfI GANTC 2 cut(s) 957, 1005
HpaII CCGG 1 cut(s) 170
HphI GGTGA 3 cut(s) 104, 163, 295
Hpy166II GTNNAC 4 cut(s) 394, 609, 667, 901
Hpy188I TCNGA 7 cut(s) 12, 118, 871, 1086, 1232, 1390, 1456
Hpy188III TCNNGA 8 cut(s) 421, 485, 593, 862, 887, 961, 1061, 1213
Hpy8I GTNNAC 4 cut(s) 394, 609, 667, 901
HpyAV CCTTC 2 cut(s) 148, 468
HpyCH4III ACNGT 2 cut(s) 805, 1067
HpyCH4IV ACGT 1 cut(s) 96
HpyF10VI GCNNNNNNNGC 3 cut(s) 771, 1182, 1278
HpyF3I CTNAG 6 cut(s) 339, 514, 1229, 1389, 1425, 1455
HpySE526I ACGT 1 cut(s) 96
Hsp92I GRCGYC 1 cut(s) 96
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 5 cut(s) 7, 70, 855, 994, 1395
LmnI GCTCC 1 cut(s) 1291
Lsp1109I GCAGC 1 cut(s) 481
LweI GCATC 6 cut(s) 478, 540, 688, 993, 1360, 1394
MaeI CTAG 2 cut(s) 245, 381
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 5 cut(s) 92, 283, 559, 1165, 1325
MalI GATC 5 cut(s) 9, 72, 857, 996, 1397
MboI GATC 5 cut(s) 7, 70, 855, 994, 1395
MboII GAAGA 7 cut(s) 20, 268, 842, 850, 1201, 1327, 1478
MflI RGATCY 1 cut(s) 1395
MhlI GDGCHC 1 cut(s) 810
MluCI AATT 8 cut(s) 24, 220, 239, 643, 1053, 1233, 1242, 1250
MlyI GAGTC 2 cut(s) 951, 999
MmeI TCCRAC 2 cut(s) 108, 309
MseI TTAA 2 cut(s) 975, 1489
MslI CAYNNNNRTG 3 cut(s) 401, 1286, 1390
MspA1I CMGCKG 2 cut(s) 389, 494
MspI CCGG 1 cut(s) 170
MwoI GCNNNNNNNGC 3 cut(s) 771, 1182, 1278
NdeI CATATG 1 cut(s) 499
NdeII GATC 5 cut(s) 7, 70, 855, 994, 1395
NlaIV GGNNCC 1 cut(s) 1397
NmeAIII GCCGAG 1 cut(s) 1375
NmuCI GTSAC 4 cut(s) 92, 283, 1165, 1325
NspI RCATGY 1 cut(s) 899
PagI TCATGA 1 cut(s) 861
PceI AGGCCT 1 cut(s) 519
PciI ACATGT 1 cut(s) 895
PflFI GACNNNGTC 1 cut(s) 1331
PkrI GCNGC 2 cut(s) 493, 496
PleI GAGTC 2 cut(s) 951, 999
PpsI GAGTC 2 cut(s) 951, 999
PpuMI RGGWCCY 1 cut(s) 1298
PscI ACATGT 1 cut(s) 895
Psp5II RGGWCCY 1 cut(s) 1298
PspFI CCCAGC 1 cut(s) 917
PspN4I GGNNCC 1 cut(s) 1397
PspPI GGNCC 3 cut(s) 81, 1274, 1298
PspPPI RGGWCCY 1 cut(s) 1298
PsuI RGATCY 1 cut(s) 1395
PsyI GACNNNGTC 1 cut(s) 1331
RseI CAYNNNNRTG 3 cut(s) 401, 1286, 1390
SaqAI TTAA 2 cut(s) 975, 1489
SatI GCNGC 2 cut(s) 492, 495
Sau3AI GATC 5 cut(s) 7, 70, 855, 994, 1395
Sau96I GGNCC 3 cut(s) 81, 1274, 1298
SchI GAGTC 2 cut(s) 951, 999
SduI GDGCHC 1 cut(s) 810
SfaNI GCATC 6 cut(s) 478, 540, 688, 993, 1360, 1394
SfcI CTRYAG 1 cut(s) 667
SinI GGWCC 3 cut(s) 81, 1274, 1298
SmiMI CAYNNNNRTG 3 cut(s) 401, 1286, 1390
SmlI CTYRAG 3 cut(s) 959, 998, 1363
SmoI CTYRAG 3 cut(s) 959, 998, 1363
Sse9I AATT 8 cut(s) 24, 220, 239, 643, 1053, 1233, 1242, 1250
SseBI AGGCCT 1 cut(s) 519
SsiI CCGC 5 cut(s) 90, 389, 492, 553, 1272
SspMI CTAG 2 cut(s) 245, 381
StuI AGGCCT 1 cut(s) 519
TaaI ACNGT 2 cut(s) 805, 1067
TaiI ACGT 1 cut(s) 99
TaqI TCGA 4 cut(s) 540, 750, 945, 1032
TasI AATT 8 cut(s) 24, 220, 239, 643, 1053, 1233, 1242, 1250
TauI GCSGC 1 cut(s) 494
Tru1I TTAA 2 cut(s) 975, 1489
Tru9I TTAA 2 cut(s) 975, 1489
TscAI CASTG 1 cut(s) 1192
TseFI GTSAC 4 cut(s) 92, 283, 1165, 1325
TseI GCWGC 1 cut(s) 494
Tsp45I GTSAC 4 cut(s) 92, 283, 1165, 1325
TspDTI ATGAA 6 cut(s) 17, 269, 461, 786, 850, 1155
TspGWI ACGGA 1 cut(s) 1388
TspRI CASTG 1 cut(s) 1192
Tth111I GACNNNGTC 1 cut(s) 1331
VpaK11BI GGWCC 3 cut(s) 81, 1274, 1298
XapI RAATTY 2 cut(s) 24, 1233
XceI RCATGY 1 cut(s) 899
XmiI GTMKAC 2 cut(s) 666, 900
XspI CTAG 2 cut(s) 245, 381
ZraI GACGTC 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.