Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001032

Physical Location & Seq

Genomic Coordinates Reverse (-)

28592477 .. 28595285

Gene Structure 2809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1198500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGGTTGCGCGTCTCTGATCCTGCTGCTCCTTCTCAATACACTCGTCCCCTCTTTATCTGGTAAGCCTGACAGTGTATGCATTTCCCAAGGCGGGCGTTTCCCGCCATTCTCTTCTGAGGGAAAGCCTCCAAAACGTGTAAGCAAGGGATCCAAAGATCTGACTCTCTGCAGGGTGTTCCGCAAAAAAACTTGCTGTGATGTAGCCCAGACACATCCTGCACTGGTATCTGTTAGGAAGTTGGCTTCATCAGGGGAAGCTGGCCCAGAGTGCTTGCATTTATGGGAATTACTGGAATGTTCCATCTGTGATCCTCGCATTGGCGTGCAGTCAGGACCTCCGGTTATATGTGCCTCTTTCTGTGACAGGGTTTTTGAGGCTTGTGCTGAGGCTTACTACTCTACGGATGCAATAACACAGGTTCTAGCACCATGTGGAGTAAATGATTATGTTTGCGGCAGGGCCTCTGAATGGATTCGTAATGGCACAGAGTTCTGCTATGCTGCAGGATTTGCCGTTAAAGATGACATATCGGTGAGCAAGGAAGAACCATTTTGCTATGGCGGGAAAGCCAGTCTTGATTTGATTGCTGATTCATGGAAGGCTTCACCATCTGAGGTGCCCCAGAAAGCTGAGAGCTTGAGGGTGCTAGAGGAATTCCAGCAGTGGTGGAGGGAAATGCCATTTAGTGAAAGAGTTTCTTGGGCCATCGGAGGATTGGTGCTTACAGCAGGCCTATTGTTTGTAAGCAAACGAAAAAGACATAACCAGCGCCACAATGTAGCCGCTCTACGAATCAGGAAATTTGAAGCCAAGAAAAGCCAGAAGTCTCCTAATAGTCCAGGAAGTAGGAAAACCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Folate_rec

Protein Analysis

288

Amino Acids

31.48

Weight (kDa)

8.94

Isoelectric Point (pI)

53.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Folate_rec	PF03024	48 - 169	1e-14	Folate receptor family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27830 AT5G27830 AT5G27830 AT5G27830 AT5G27830 AT5G27830
fragaria_vesca	FvH4_6g06800 FvH4_6g06800 FvH4_6g06800
malus_domestica	MD04G1198500.v1.1
prunus_persica	Prupe.6G319500_v2.0.a1
pyrus_communis	pycom04g17560 pycom12g19820
rosa_chinensis	RchiOBHm_Chr2g0123281 RchiOBHm_Chr3g0456161 RchiOBHm_Chr3g0458101 RchiOBHm_Chr4g0442861 RchiOBHm_Chr4g0442871 RchiOBHm_Chr4g0442951
rosa_laevigata	RLG00000005970 RLG00000010014
rosa_multiflora	Rmu_sc0000121.1_g000021 Rmu_sc0000124.1_g000039 Rmu_sc0000279.1_g000039 Rmu_sc0000384.1_g000020 Rmu_sc0001917.1_g000005 Rmu_sc0002607.1_g000043 Rmu_sc0007295.1_g000002 Rmu_sc0042689.1_g000001
rosa_roxburghii	Rroxscaffold_6G00423260 Rroxscaffold_6G00423720
rosa_rugosa	Rorug03G0012000 Rorug03G0012100 Rorug04G0109700 Rorug04G0343700
rosa_samantha	Rh1CG037400 Rh2BG184700 Rh2BG311600 Rh3AG072300 Rh3AG085600 Rh3BG074200 Rh3BG088300 Rh3CG073700 Rh3DG075500 Rh3DG089200 Rh4AG396600 Rh4AG396900 Rh4AG397000 Rh4AG397400 Rh4AG397800 Rh4BG409300 Rh4CG424800 Rh4DG403200 Rh4DG403500 Rh4DG403600 Rh4DG404100 Rh5BG556500 Rh6BG383200
rosa_wichuraiana	Rw2G024280 Rw3G005860 Rw3G006140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	619
AccBSI	CCGCTC	1 cut(s)	788
AccII	CGCG	1 cut(s)	11
AciI	CCGC	6 cut(s)	93, 104, 181, 456, 564, 786
AclWI	GGATC	4 cut(s)	13, 144, 157, 305
AcsI	RAATTY	2 cut(s)	656, 803
AdeI	CACNNNGTG	1 cut(s)	434
AfiI	CCNNNNNNNGG	3 cut(s)	93, 320, 471
AflIII	ACRYGT	1 cut(s)	136
AgsI	TTSAA	1 cut(s)	809
AjnI	CCWGG	1 cut(s)	841
AluBI	AGCT	3 cut(s)	260, 632, 639
AluI	AGCT	3 cut(s)	260, 632, 639
Alw26I	GTCTC	2 cut(s)	18, 834
AlwI	GGATC	4 cut(s)	13, 144, 157, 305
AoxI	GGCC	4 cut(s)	262, 462, 705, 733
ApeKI	GCWGC	2 cut(s)	25, 503
ApoI	RAATTY	2 cut(s)	656, 803
ArsI	GACNNNNNNTTYG	2 cut(s)	356, 388
Asp700I	GAANNNNTTC	1 cut(s)	474
AspLEI	GCGC	2 cut(s)	11, 774
AspS9I	GGNCC	4 cut(s)	263, 335, 462, 705
AsuHPI	GGTGA	2 cut(s)	547, 600
AvaII	GGWCC	1 cut(s)	335
BaeGI	GKGCMC	1 cut(s)	624
BamHI	GGATCC	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	619
BbvCI	CCTCAGC	1 cut(s)	387
BbvI	GCAGC	2 cut(s)	12, 490
BccI	CCATC	3 cut(s)	311, 619, 716
BceAI	ACGGC	1 cut(s)	500
BciT130I	CCWGG	1 cut(s)	843
BcoDI	GTCTC	2 cut(s)	18, 834
BfaI	CTAG	2 cut(s)	425, 650
BfmI	CTRYAG	2 cut(s)	169, 504
BfoI	RGCGCY	1 cut(s)	775
BglII	AGATCT	1 cut(s)	157
BisI	GCNGC	4 cut(s)	26, 457, 504, 786
BlsI	GCNGC	4 cut(s)	27, 458, 505, 787
Bme1390I	CCNGG	1 cut(s)	843
Bme18I	GGWCC	1 cut(s)	335
BmgT120I	GGNCC	4 cut(s)	263, 335, 462, 705
BmiI	GGNNCC	2 cut(s)	151, 621
BmrFI	CCNGG	1 cut(s)	843
BmsI	GCATC	1 cut(s)	397
Bpu10I	CCTNAGC	1 cut(s)	387
BpuEI	CTTGAG	1 cut(s)	661
BsaJI	CCNNGG	1 cut(s)	88
BsaWI	WCCGGW	1 cut(s)	340
BsaXI	ACNNNNNCTCC	2 cut(s)	705, 735
Bsc4I	CCNNNNNNNGG	3 cut(s)	93, 320, 471
Bse1I	ACTGG	3 cut(s)	228, 297, 573
BseBI	CCWGG	1 cut(s)	843
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	2 cut(s)	214, 412
BseLI	CCNNNNNNNGG	3 cut(s)	93, 320, 471
BseMII	CTCAG	4 cut(s)	108, 378, 606, 624
BseNI	ACTGG	3 cut(s)	228, 297, 573
BseSI	GKGCMC	1 cut(s)	624
BseXI	GCAGC	2 cut(s)	12, 490
BsgI	GTGCAG	2 cut(s)	204, 347
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	4 cut(s)	264, 464, 707, 735
BshNI	GGYRCC	1 cut(s)	619
BsiSI	CCGG	1 cut(s)	341
BslFI	GGGAC	1 cut(s)	32
BslI	CCNNNNNNNGG	3 cut(s)	93, 320, 471
BsmAI	GTCTC	2 cut(s)	18, 834
BsmBI	CGTCTC	1 cut(s)	18
BsmFI	GGGAC	1 cut(s)	32
BsnI	GGCC	4 cut(s)	264, 464, 707, 735
Bsp1286I	GDGCHC	1 cut(s)	624
Bsp143I	GATC	4 cut(s)	18, 149, 157, 310
BspACI	CCGC	6 cut(s)	93, 104, 181, 456, 564, 786
BspANI	GGCC	4 cut(s)	264, 464, 707, 735
BspCNI	CTCAG	4 cut(s)	109, 379, 607, 625
BspFNI	CGCG	1 cut(s)	11
BspLI	GGNNCC	2 cut(s)	151, 621
BspMAI	CTGCAG	2 cut(s)	173, 508
BspPI	GGATC	4 cut(s)	13, 144, 157, 305
BspT107I	GGYRCC	1 cut(s)	619
BsrBI	CCGCTC	1 cut(s)	788
BsrI	ACTGG	3 cut(s)	228, 297, 573
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	4 cut(s)	18, 149, 157, 310
BssT1I	CCWWGG	1 cut(s)	88
Bst2UI	CCWGG	1 cut(s)	843
Bst4CI	ACNGT	1 cut(s)	74
Bst6I	CTCTTC	1 cut(s)	118
BstAPI	GCANNNNNTGC	1 cut(s)	512
BstC8I	GCNNGC	5 cut(s)	95, 262, 275, 326, 733
BstDEI	CTNAG	4 cut(s)	117, 387, 615, 633
BstF5I	GGATG	2 cut(s)	214, 412
BstFNI	CGCG	1 cut(s)	11
BstH2I	RGCGCY	1 cut(s)	775
BstHHI	GCGC	2 cut(s)	11, 774
BstKTI	GATC	4 cut(s)	21, 152, 160, 313
BstMAI	GTCTC	2 cut(s)	18, 834
BstMBI	GATC	4 cut(s)	18, 149, 157, 310
BstMWI	GCNNNNNNNGC	3 cut(s)	103, 270, 512
BstNI	CCWGG	1 cut(s)	843
BstSCI	CCNGG	1 cut(s)	841
BstSFI	CTRYAG	2 cut(s)	169, 504
BstSLI	GKGCMC	1 cut(s)	624
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	2 cut(s)	12, 490
BstX2I	RGATCY	2 cut(s)	149, 157
BstYI	RGATCY	2 cut(s)	149, 157
BsuRI	GGCC	4 cut(s)	264, 464, 707, 735
BtsCI	GGATG	2 cut(s)	214, 412
BtsI	GCAGTG	1 cut(s)	671
BtsIMutI	CAGTG	3 cut(s)	79, 221, 671
Cac8I	GCNNGC	5 cut(s)	95, 262, 275, 326, 733
CfoI	GCGC	2 cut(s)	11, 774
Cfr13I	GGNCC	4 cut(s)	263, 335, 462, 705
CviAII	CATG	2 cut(s)	432, 597
DdeI	CTNAG	4 cut(s)	117, 387, 615, 633
DpnI	GATC	4 cut(s)	20, 151, 159, 312
DpnII	GATC	4 cut(s)	18, 149, 157, 310
DraIII	CACNNNGTG	1 cut(s)	434
Eam1104I	CTCTTC	1 cut(s)	118
EarI	CTCTTC	1 cut(s)	118
Eco130I	CCWWGG	1 cut(s)	88
Eco147I	AGGCCT	1 cut(s)	735
Eco47I	GGWCC	1 cut(s)	335
EcoO109I	RGGNCCY	2 cut(s)	335, 462
EcoRI	GAATTC	1 cut(s)	656
EcoRII	CCWGG	1 cut(s)	841
EcoT14I	CCWWGG	1 cut(s)	88
EcoT22I	ATGCAT	1 cut(s)	83
ErhI	CCWWGG	1 cut(s)	88
Esp3I	CGTCTC	1 cut(s)	18
FaeI	CATG	2 cut(s)	435, 600
FalI	AAGNNNNNCTT	4 cut(s)	561, 593, 685, 717
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	2 cut(s)	431, 596
FauI	CCCGC	3 cut(s)	86, 111, 557
Fnu4HI	GCNGC	4 cut(s)	26, 457, 504, 786
FokI	GGATG	2 cut(s)	201, 419
Fsp4HI	GCNGC	4 cut(s)	26, 457, 504, 786
FspBI	CTAG	2 cut(s)	425, 650
GlaI	GCGC	2 cut(s)	10, 773
GluI	GCNGC	4 cut(s)	26, 457, 504, 786
HaeII	RGCGCY	1 cut(s)	775
HaeIII	GGCC	4 cut(s)	264, 464, 707, 735
HapII	CCGG	1 cut(s)	341
HhaI	GCGC	2 cut(s)	11, 774
Hin1II	CATG	2 cut(s)	435, 600
Hin6I	GCGC	2 cut(s)	9, 772
HinP1I	GCGC	2 cut(s)	9, 772
HinfI	GANTC	4 cut(s)	163, 475, 593, 795
HpaII	CCGG	1 cut(s)	341
HphI	GGTGA	2 cut(s)	547, 600
Hpy188I	TCNGA	6 cut(s)	18, 118, 162, 469, 616, 713
Hpy188III	TCNNGA	3 cut(s)	333, 578, 799
HpyAV	CCTTC	2 cut(s)	41, 595
HpyCH4III	ACNGT	1 cut(s)	74
HpyCH4IV	ACGT	1 cut(s)	136
HpyCH4V	TGCA	7 cut(s)	81, 171, 221, 277, 328, 410, 506
HpyF10VI	GCNNNNNNNGC	3 cut(s)	103, 270, 512
HpyF3I	CTNAG	4 cut(s)	117, 387, 615, 633
HpySE526I	ACGT	1 cut(s)	136
Hsp92II	CATG	2 cut(s)	435, 600
HspAI	GCGC	2 cut(s)	9, 772
Kzo9I	GATC	4 cut(s)	18, 149, 157, 310
LmnI	GCTCC	1 cut(s)	33
Lsp1109I	GCAGC	2 cut(s)	12, 490
LweI	GCATC	1 cut(s)	397
MaeI	CTAG	2 cut(s)	425, 650
MaeII	ACGT	1 cut(s)	136
MaeIII	GTNAC	1 cut(s)	362
MalI	GATC	4 cut(s)	20, 151, 159, 312
MbiI	CCGCTC	1 cut(s)	788
MboI	GATC	4 cut(s)	18, 149, 157, 310
MboII	GAAGA	2 cut(s)	105, 557
MflI	RGATCY	2 cut(s)	149, 157
MhlI	GDGCHC	1 cut(s)	624
MluCI	AATT	3 cut(s)	287, 656, 803
MlyI	GAGTC	1 cut(s)	157
Mph1103I	ATGCAT	1 cut(s)	83
MroXI	GAANNNNTTC	1 cut(s)	474
MseI	TTAA	1 cut(s)	519
MslI	CAYNNNNRTG	2 cut(s)	323, 533
MspI	CCGG	1 cut(s)	341
MspR9I	CCNGG	1 cut(s)	843
MvaI	CCWGG	1 cut(s)	843
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	3 cut(s)	103, 270, 512
NdeII	GATC	4 cut(s)	18, 149, 157, 310
NlaIII	CATG	2 cut(s)	435, 600
NlaIV	GGNNCC	2 cut(s)	151, 621
NmuCI	GTSAC	1 cut(s)	362
NsiI	ATGCAT	1 cut(s)	83
PceI	AGGCCT	1 cut(s)	735
PdmI	GAANNNNTTC	1 cut(s)	474
PfeI	GAWTC	3 cut(s)	475, 593, 795
PfoI	TCCNGGA	1 cut(s)	841
PkrI	GCNGC	4 cut(s)	27, 458, 505, 787
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
PpuMI	RGGWCCY	1 cut(s)	335
Psp5II	RGGWCCY	1 cut(s)	335
Psp6I	CCWGG	1 cut(s)	841
PspGI	CCWGG	1 cut(s)	841
PspN4I	GGNNCC	2 cut(s)	151, 621
PspPI	GGNCC	4 cut(s)	263, 335, 462, 705
PspPPI	RGGWCCY	1 cut(s)	335
PstI	CTGCAG	2 cut(s)	173, 508
PsuI	RGATCY	2 cut(s)	149, 157
RseI	CAYNNNNRTG	2 cut(s)	323, 533
SaqAI	TTAA	1 cut(s)	519
SatI	GCNGC	4 cut(s)	26, 457, 504, 786
Sau3AI	GATC	4 cut(s)	18, 149, 157, 310
Sau96I	GGNCC	4 cut(s)	263, 335, 462, 705
SchI	GAGTC	1 cut(s)	157
ScrFI	CCNGG	1 cut(s)	843
SduI	GDGCHC	1 cut(s)	624
SetI	ASST	7 cut(s)	139, 262, 340, 423, 621, 634, 641
SfaNI	GCATC	1 cut(s)	397
SfcI	CTRYAG	2 cut(s)	169, 504
SinI	GGWCC	1 cut(s)	335
SmiMI	CAYNNNNRTG	2 cut(s)	323, 533
SmlI	CTYRAG	1 cut(s)	640
SmoI	CTYRAG	1 cut(s)	640
Sse9I	AATT	3 cut(s)	287, 656, 803
SseBI	AGGCCT	1 cut(s)	735
SsiI	CCGC	6 cut(s)	93, 104, 181, 456, 564, 786
SspMI	CTAG	2 cut(s)	425, 650
StuI	AGGCCT	1 cut(s)	735
StyD4I	CCNGG	1 cut(s)	841
StyI	CCWWGG	1 cut(s)	88
TaaI	ACNGT	1 cut(s)	74
TaiI	ACGT	1 cut(s)	139
TasI	AATT	3 cut(s)	287, 656, 803
TauI	GCSGC	2 cut(s)	459, 788
TfiI	GAWTC	3 cut(s)	475, 593, 795
Tru1I	TTAA	1 cut(s)	519
Tru9I	TTAA	1 cut(s)	519
TscAI	CASTG	3 cut(s)	79, 228, 671
TseFI	GTSAC	1 cut(s)	362
TseI	GCWGC	2 cut(s)	25, 503
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	2 cut(s)	237, 585
TspGWI	ACGGA	1 cut(s)	419
TspRI	CASTG	3 cut(s)	79, 228, 671
VpaK11BI	GGWCC	1 cut(s)	335
XapI	RAATTY	2 cut(s)	656, 803
XcmI	CCANNNNNNNNNTGG	1 cut(s)	715
XmnI	GAANNNNTTC	1 cut(s)	474
XspI	CTAG	2 cut(s)	425, 650
Zsp2I	ATGCAT	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.