Rorug03G0012000

Folate receptor family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0001032
Physical Location & Seq
Reverse (-)
931390 .. 932285
896 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0012000.1

Sequence Viewer

Length: 387 bp
ATGAAGTTTCGAGAAACCGTTCTTGGAACAAAGCCTGCTCCAGCTGCAGGCTGCAGCCTTTTCATAGCTCAAGGCCCTTCACCAAATTATCCAGCATTCTACATCACCCCTAAGACATTCGTTAACCAAAAGTTTGAGAGATTTGTAACCAACGTAGGTGATGGCTCGGCGAATTACGATGTCACAGTTATGGCACCAAAGGGTTCTGTTGTTACGGTGTCGCCAGAGAGATTGGTGTTCAATAAGAAGTATGAGAAGCAAAACTACACTATCACAATCAAGTATAAGAGCAACAAGAACCATAGTGACCGATTTGGTGCACTTGCTAGGGTCGAAGACAATGGAAAATACGCTGTGAGGAGCCCTATTGGTATCACTCTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Folate_rec

Protein Analysis

128

Amino Acids

14.14

Weight (kDa)

9.78

Isoelectric Point (pI)

38.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
fn3_6 PF17766 29 - 123 3.7e-23 Fibronectin type-III domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 193
AfiI CCNNNNNNNGG 1 cut(s) 47
AgsI TTSAA 1 cut(s) 241
AjuI GAANNNNNNNTTGG 1 cut(s) 38
AluBI AGCT 2 cut(s) 44, 68
AluI AGCT 2 cut(s) 44, 68
Alw21I GWGCWC 1 cut(s) 322
Alw44I GTGCAC 1 cut(s) 318
AoxI GGCC 1 cut(s) 73
ApaLI GTGCAC 1 cut(s) 318
ApeKI GCWGC 3 cut(s) 44, 51, 54
Asp700I GAANNNNTTC 1 cut(s) 18
AspS9I GGNCC 1 cut(s) 74
AsuHPI GGTGA 3 cut(s) 72, 97, 170
BaeGI GKGCMC 1 cut(s) 322
BanI GGYRCC 1 cut(s) 193
BanII GRGCYC 1 cut(s) 365
BarI GAAGNNNNNNTAC 2 cut(s) 248, 280
BbsI GAAGAC 1 cut(s) 342
Bbv12I GWGCWC 1 cut(s) 322
BbvI GCAGC 3 cut(s) 31, 38, 66
BccI CCATC 1 cut(s) 155
BfaI CTAG 1 cut(s) 327
BfmI CTRYAG 2 cut(s) 45, 52
BisI GCNGC 3 cut(s) 45, 52, 55
BlsI GCNGC 3 cut(s) 46, 53, 56
BmgT120I GGNCC 1 cut(s) 74
BmiI GGNNCC 2 cut(s) 195, 362
BpiI GAAGAC 1 cut(s) 342
BpmI CTGGAG 1 cut(s) 24
BpuEI CTTGAG 1 cut(s) 54
Bsc4I CCNNNNNNNGG 1 cut(s) 47
BseLI CCNNNNNNNGG 1 cut(s) 47
BseRI GAGGAG 1 cut(s) 373
BseSI GKGCMC 1 cut(s) 322
BseXI GCAGC 3 cut(s) 31, 38, 66
BshFI GGCC 1 cut(s) 75
BshNI GGYRCC 1 cut(s) 193
BsiHKAI GWGCWC 1 cut(s) 322
BslI CCNNNNNNNGG 1 cut(s) 47
BsmI GAATGC 1 cut(s) 95
BsnI GGCC 1 cut(s) 75
Bsp1286I GDGCHC 2 cut(s) 322, 365
BspANI GGCC 1 cut(s) 75
BspLI GGNNCC 2 cut(s) 195, 362
BspMAI CTGCAG 2 cut(s) 49, 56
BspT107I GGYRCC 1 cut(s) 193
Bst4CI ACNGT 3 cut(s) 19, 187, 217
BstC8I GCNNGC 2 cut(s) 36, 49
BstDEI CTNAG 1 cut(s) 111
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstSFI CTRYAG 2 cut(s) 45, 52
BstSLI GKGCMC 1 cut(s) 322
BstV1I GCAGC 3 cut(s) 31, 38, 66
BstV2I GAAGAC 1 cut(s) 342
BsuRI GGCC 1 cut(s) 75
Cac8I GCNNGC 2 cut(s) 36, 49
Cfr13I GGNCC 1 cut(s) 74
CviJI RGCY 8 cut(s) 34, 44, 51, 57, 68, 75, 165, 363
CviKI_1 RGCY 8 cut(s) 34, 44, 51, 57, 68, 75, 165, 363
DdeI CTNAG 1 cut(s) 111
Eco24I GRGCYC 1 cut(s) 365
EcoO109I RGGNCCY 1 cut(s) 74
EcoT38I GRGCYC 1 cut(s) 365
FaiI YATR 5 cut(s) 65, 191, 252, 285, 303
Fnu4HI GCNGC 3 cut(s) 45, 52, 55
FriOI GRGCYC 1 cut(s) 365
Fsp4HI GCNGC 3 cut(s) 45, 52, 55
FspBI CTAG 1 cut(s) 327
GluI GCNGC 3 cut(s) 45, 52, 55
GsuI CTGGAG 1 cut(s) 24
HaeIII GGCC 1 cut(s) 75
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HpaI GTTAAC 1 cut(s) 124
HphI GGTGA 3 cut(s) 72, 97, 170
Hpy166II GTNNAC 2 cut(s) 124, 320
Hpy188III TCNNGA 1 cut(s) 11
Hpy8I GTNNAC 2 cut(s) 124, 320
HpyAV CCTTC 1 cut(s) 87
HpyCH4III ACNGT 3 cut(s) 19, 187, 217
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 3 cut(s) 47, 54, 320
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 1 cut(s) 111
HpySE526I ACGT 1 cut(s) 153
KspAI GTTAAC 1 cut(s) 124
LmnI GCTCC 2 cut(s) 43, 360
LpnPI CCDG 5 cut(s) 33, 48, 54, 105, 237
Lsp1109I GCAGC 3 cut(s) 31, 38, 66
MaeI CTAG 1 cut(s) 327
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 4 cut(s) 145, 181, 211, 305
MboII GAAGA 1 cut(s) 347
MhlI GDGCHC 2 cut(s) 322, 365
MluCI AATT 2 cut(s) 85, 172
MnlI CCTC 1 cut(s) 351
MroXI GAANNNNTTC 1 cut(s) 18
MseI TTAA 1 cut(s) 123
MslI CAYNNNNRTG 1 cut(s) 188
MspA1I CMGCKG 1 cut(s) 44
Mva1269I GAATGC 1 cut(s) 95
MwoI GCNNNNNNNGC 1 cut(s) 44
NlaIV GGNNCC 2 cut(s) 195, 362
NmeAIII GCCGAG 1 cut(s) 146
NmuCI GTSAC 2 cut(s) 181, 305
PctI GAATGC 1 cut(s) 95
PdmI GAANNNNTTC 1 cut(s) 18
PkrI GCNGC 3 cut(s) 46, 53, 56
PspN4I GGNNCC 2 cut(s) 195, 362
PspPI GGNCC 1 cut(s) 74
PstI CTGCAG 2 cut(s) 49, 56
PvuII CAGCTG 1 cut(s) 44
RseI CAYNNNNRTG 1 cut(s) 188
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 3 cut(s) 45, 52, 55
Sau96I GGNCC 1 cut(s) 74
SduI GDGCHC 2 cut(s) 322, 365
SetI ASST 4 cut(s) 46, 70, 156, 160
SfcI CTRYAG 2 cut(s) 45, 52
SmiMI CAYNNNNRTG 1 cut(s) 188
SmlI CTYRAG 1 cut(s) 69
SmoI CTYRAG 1 cut(s) 69
Sse9I AATT 2 cut(s) 85, 172
SspMI CTAG 1 cut(s) 327
TaaI ACNGT 3 cut(s) 19, 187, 217
TaiI ACGT 1 cut(s) 156
TaqI TCGA 2 cut(s) 10, 333
TaqII GACCGA 1 cut(s) 324
TasI AATT 2 cut(s) 85, 172
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TseFI GTSAC 2 cut(s) 181, 305
TseI GCWGC 3 cut(s) 44, 51, 54
Tsp45I GTSAC 2 cut(s) 181, 305
TspDTI ATGAA 2 cut(s) 17, 52
VneI GTGCAC 1 cut(s) 318
XmnI GAANNNNTTC 1 cut(s) 18
XspI CTAG 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.