Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001032

Physical Location & Seq

Genomic Coordinates Forward (+)

61194275 .. 61221265

Gene Structure 26991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG383200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGTACAGGAGTCTCTTGAGATCCAAAGGAGCCGAGAACACAAACACTTCCTTAATCGAGAGGAGAGACACAACTGCAACGTGCGTCGAGCTCTCCACCCAAGACGACGTGTTGCTTCGCCACTCTTTCCCTTGCTATCTAGAATTGGAGGAGTTCGGCAAGACCTTCAAACTAGAGTTCCTGATGCAGACACATGTTAAGAGATCAAATCTTCCTACAGATGGAGCTGACTTTGTCATGGAAGATGTCCCATTATTGACAAATCTTCTGCAATATCATGATGCTAAGCTTGTCAAACATAGAAATAAATTAGCTAAAGATGTCCTAAATGATGGCATACTGATGCCGCGTCCTGCTAAAGGCATTCCTCATGCATGGAGTAGTAACCCTAATATGCAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006464 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016020 GO:0016043 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022402 GO:0030154 GO:0032446 GO:0032502 GO:0032989 GO:0034641 GO:0034645 GO:0036211 GO:0042023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048468 GO:0048856 GO:0048869 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0090558 GO:0090626 GO:0140096 GO:1901360 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

HECT

Protein Analysis

134

Amino Acids

15.34

Weight (kDa)

6.96

Isoelectric Point (pI)

42.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27830 AT5G27830 AT5G27830 AT5G27830 AT5G27830 AT5G27830
fragaria_vesca	FvH4_6g06800 FvH4_6g06800 FvH4_6g06800
malus_domestica	MD04G1198500.v1.1
prunus_persica	Prupe.6G319500_v2.0.a1
pyrus_communis	pycom04g17560 pycom12g19820
rosa_chinensis	RchiOBHm_Chr2g0123281 RchiOBHm_Chr3g0456161 RchiOBHm_Chr3g0458101 RchiOBHm_Chr4g0442861 RchiOBHm_Chr4g0442871 RchiOBHm_Chr4g0442951
rosa_laevigata	RLG00000005970 RLG00000010014
rosa_multiflora	Rmu_sc0000121.1_g000021 Rmu_sc0000124.1_g000039 Rmu_sc0000279.1_g000039 Rmu_sc0000384.1_g000020 Rmu_sc0001917.1_g000005 Rmu_sc0002607.1_g000043 Rmu_sc0007295.1_g000002 Rmu_sc0042689.1_g000001
rosa_roxburghii	Rroxscaffold_6G00423260 Rroxscaffold_6G00423720
rosa_rugosa	Rorug03G0012000 Rorug03G0012100 Rorug04G0109700 Rorug04G0343700
rosa_samantha	Rh1CG037400 Rh2BG184700 Rh2BG311600 Rh3AG072300 Rh3AG085600 Rh3BG074200 Rh3BG088300 Rh3CG073700 Rh3DG075500 Rh3DG089200 Rh4AG396600 Rh4AG396900 Rh4AG397000 Rh4AG397400 Rh4AG397800 Rh4BG409300 Rh4CG424800 Rh4DG403200 Rh4DG403500 Rh4DG403600 Rh4DG404100 Rh5BG556500 Rh6BG383200
rosa_wichuraiana	Rw2G024280 Rw3G005860 Rw3G006140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	349
AciI	CCGC	1 cut(s)	347
AclWI	GGATC	1 cut(s)	15
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	221, 359
AflIII	ACRYGT	2 cut(s)	108, 193
AgsI	TTSAA	1 cut(s)	169
AjiI	CACGTC	1 cut(s)	109
AluBI	AGCT	4 cut(s)	91, 227, 289, 314
AluI	AGCT	4 cut(s)	91, 227, 289, 314
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	2 cut(s)	17, 60
AlwI	GGATC	1 cut(s)	15
BanII	GRGCYC	1 cut(s)	93
Bbv12I	GWGCWC	1 cut(s)	93
BccI	CCATC	2 cut(s)	215, 326
BcoDI	GTCTC	2 cut(s)	17, 60
BfaI	CTAG	3 cut(s)	140, 173, 403
BfmI	CTRYAG	1 cut(s)	216
BisI	GCNGC	1 cut(s)	347
BlpI	GCTNAGC	1 cut(s)	285
BlsI	GCNGC	1 cut(s)	348
BmgBI	CACGTC	1 cut(s)	109
BmiI	GGNNCC	1 cut(s)	31
BmsI	GCATC	3 cut(s)	174, 271, 333
Bpu1102I	GCTNAGC	1 cut(s)	285
BpuEI	CTTGAG	1 cut(s)	37
Bsc4I	CCNNNNNNNGG	2 cut(s)	221, 359
BseLI	CCNNNNNNNGG	2 cut(s)	221, 359
BseRI	GAGGAG	2 cut(s)	76, 164
Bsh1236I	CGCG	1 cut(s)	349
BsiHKAI	GWGCWC	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	233
BslI	CCNNNNNNNGG	2 cut(s)	221, 359
BsmAI	GTCTC	2 cut(s)	17, 60
BsmFI	GGGAC	1 cut(s)	233
BsmI	GAATGC	1 cut(s)	363
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	2 cut(s)	20, 203
Bsp1720I	GCTNAGC	1 cut(s)	285
BspACI	CCGC	1 cut(s)	347
BspFNI	CGCG	1 cut(s)	349
BspHI	TCATGA	1 cut(s)	277
BspLI	GGNNCC	1 cut(s)	31
BspPI	GGATC	1 cut(s)	15
BsrGI	TGTACA	1 cut(s)	3
BssMI	GATC	2 cut(s)	20, 203
BstAUI	TGTACA	1 cut(s)	3
BstDEI	CTNAG	1 cut(s)	285
BstENI	CCTNNNNNAGG	1 cut(s)	357
BstFNI	CGCG	1 cut(s)	349
BstKTI	GATC	2 cut(s)	23, 206
BstMAI	GTCTC	2 cut(s)	17, 60
BstMBI	GATC	2 cut(s)	20, 203
BstNSI	RCATGY	1 cut(s)	197
BstSFI	CTRYAG	1 cut(s)	216
BstUI	CGCG	1 cut(s)	349
BstX2I	RGATCY	1 cut(s)	20
BstYI	RGATCY	1 cut(s)	20
BtrI	CACGTC	1 cut(s)	109
CciI	TCATGA	1 cut(s)	277
CseI	GACGC	2 cut(s)	73, 338
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	5 cut(s)	194, 238, 278, 371, 375
CviJI	RGCY	5 cut(s)	32, 91, 227, 289, 314
CviKI_1	RGCY	5 cut(s)	32, 91, 227, 289, 314
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	2 cut(s)	22, 205
DpnII	GATC	2 cut(s)	20, 203
Ecl136II	GAGCTC	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	93
Eco53kI	GAGCTC	1 cut(s)	91
EcoICRI	GAGCTC	1 cut(s)	91
EcoNI	CCTNNNNNAGG	1 cut(s)	357
EcoT22I	ATGCAT	1 cut(s)	376
EcoT38I	GRGCYC	1 cut(s)	93
FaeI	CATG	5 cut(s)	197, 241, 281, 374, 378
FaiI	YATR	8 cut(s)	195, 239, 279, 300, 338, 372, 376, 395
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	5 cut(s)	193, 237, 277, 370, 374
Fnu4HI	GCNGC	1 cut(s)	347
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	1 cut(s)	347
FspBI	CTAG	3 cut(s)	140, 173, 403
GluI	GCNGC	1 cut(s)	347
HgaI	GACGC	2 cut(s)	73, 338
Hin1II	CATG	5 cut(s)	197, 241, 281, 374, 378
HindIII	AAGCTT	1 cut(s)	287
HinfI	GANTC	1 cut(s)	10
Hpy188III	TCNNGA	5 cut(s)	16, 58, 140, 181, 278
Hpy99I	CGWCG	2 cut(s)	89, 110
HpyAV	CCTTC	1 cut(s)	175
HpyCH4IV	ACGT	2 cut(s)	80, 108
HpyCH4V	TGCA	5 cut(s)	77, 187, 271, 374, 397
HpyF3I	CTNAG	1 cut(s)	285
HpySE526I	ACGT	2 cut(s)	80, 108
Hsp92II	CATG	5 cut(s)	197, 241, 281, 374, 378
Kzo9I	GATC	2 cut(s)	20, 203
LmnI	GCTCC	2 cut(s)	29, 224
LpnPI	CCDG	2 cut(s)	194, 366
LweI	GCATC	3 cut(s)	174, 271, 333
MaeI	CTAG	3 cut(s)	140, 173, 403
MaeII	ACGT	2 cut(s)	80, 108
MaeIII	GTNAC	1 cut(s)	383
MalI	GATC	2 cut(s)	22, 205
MboI	GATC	2 cut(s)	20, 203
MboII	GAAGA	3 cut(s)	203, 254, 257
MflI	RGATCY	1 cut(s)	20
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	2 cut(s)	143, 308
MlyI	GAGTC	1 cut(s)	19
MnlI	CCTC	3 cut(s)	54, 142, 378
Mph1103I	ATGCAT	1 cut(s)	376
MseI	TTAA	2 cut(s)	53, 198
MslI	CAYNNNNRTG	1 cut(s)	341
Mva1269I	GAATGC	1 cut(s)	363
MvnI	CGCG	1 cut(s)	349
NdeII	GATC	2 cut(s)	20, 203
NlaIII	CATG	5 cut(s)	197, 241, 281, 374, 378
NlaIV	GGNNCC	1 cut(s)	31
NmeAIII	GCCGAG	1 cut(s)	58
NsiI	ATGCAT	1 cut(s)	376
NspI	RCATGY	1 cut(s)	197
PagI	TCATGA	1 cut(s)	277
PciI	ACATGT	1 cut(s)	193
PctI	GAATGC	1 cut(s)	363
PflFI	GACNNNGTC	1 cut(s)	233
PkrI	GCNGC	1 cut(s)	348
PleI	GAGTC	1 cut(s)	18
PpsI	GAGTC	1 cut(s)	18
PscI	ACATGT	1 cut(s)	193
Psp124BI	GAGCTC	1 cut(s)	93
PspN4I	GGNNCC	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	20
PsyI	GACNNNGTC	1 cut(s)	233
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	341
SacI	GAGCTC	1 cut(s)	93
SaqAI	TTAA	2 cut(s)	53, 198
SatI	GCNGC	1 cut(s)	347
Sau3AI	GATC	2 cut(s)	20, 203
SchI	GAGTC	1 cut(s)	19
SduI	GDGCHC	1 cut(s)	93
SetI	ASST	7 cut(s)	83, 93, 111, 167, 229, 291, 316
SfaNI	GCATC	3 cut(s)	174, 271, 333
SfcI	CTRYAG	1 cut(s)	216
SmiMI	CAYNNNNRTG	1 cut(s)	341
SmlI	CTYRAG	1 cut(s)	16
SmoI	CTYRAG	1 cut(s)	16
Sse9I	AATT	2 cut(s)	143, 308
SsiI	CCGC	1 cut(s)	347
SspMI	CTAG	3 cut(s)	140, 173, 403
SstI	GAGCTC	1 cut(s)	93
TaiI	ACGT	2 cut(s)	83, 111
TaqI	TCGA	2 cut(s)	57, 87
TasI	AATT	2 cut(s)	143, 308
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	349
Tru1I	TTAA	2 cut(s)	53, 198
Tru9I	TTAA	2 cut(s)	53, 198
Tth111I	GACNNNGTC	1 cut(s)	233
XagI	CCTNNNNNAGG	1 cut(s)	357
XbaI	TCTAGA	1 cut(s)	139
XceI	RCATGY	1 cut(s)	197
XspI	CTAG	3 cut(s)	140, 173, 403
Zsp2I	ATGCAT	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.