Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001032

Physical Location & Seq

Genomic Coordinates Reverse (-)

4071769 .. 4075148

Gene Structure 3380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g06800.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGAACAAAGTCCATTCTTTGGTTCCGAGTCTTTCAGAAGCTCACTACAAAACTCGAGAAGGGAAATGGGTTATGGTTATCTGATCTTGCTGCTCCTTATCAATACACTGGTTCCTTTGTCTTCTGGTAAATTGGACAGAGTGTGCATTTCCCAAGGTAGTCGTTTTCCTCCATTCTCTTCTGAGGGGAAGCCTCCAAAACGAGTCAGCAAGGGACCCAAAGATCTAACTCTTTGCAGGGTGTTCCGCAAAAACACTTGTTGTGATGTAGCCCAGACACATCCTGCTCTGATAGCCATTAGGAAGTTGGCTTCGTCAGGTGAAGCTAACTCAGAGTGCTTGCAATTATGGGAATTATTGGAATGTTCTATCTGTGATCCCCGCATTGGTGTACAGCCAGGACCTCCAGTTATATGTGCTTCTTTCTGTGACCGGGTCTTCAATGCTTGTTCTGGGGCTTACTACTCAACAGATGCAATAACGCAGGTTCTAGCACCCTGTGGATTAAATGATTATGTTTGTGGGAGAGCCTCTGAGTGGATTCTTAATGGCACAGAATTCTGCCATGCTGCAGGGTTTGCTGTTAAGGGTGATATGTCTGATAGCCTGGAAGAAACATTTTGCTATGGTGGTAAAGCTAGTCTTGATTTGATTGCGGATTCATGGAAGGTTCCACAATCTGAGGTGCCCCAGAAAGTTGGGAGCTTGAGGCTGCTAGAGGAGTTCCAGGAGAGAGTGAGGGAAATGCCATATAGTGAACGAGTTTCCTGGGCTGTGGGAGGATTGGTCCTTACAGCAGGCCTGTTGTTTGTAAGAAGGAAAGGTCATAACCAGCGCCACAGACAAGCTGCTTTCCAGCGTACCACTAAAAAACTGGAAGCCAAGACGTACCCCAAAGCTACTGATAGTCATGGAAATAGGAAAGTAAGTAAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Folate_rec

Protein Analysis

313

Amino Acids

34.54

Weight (kDa)

8.97

Isoelectric Point (pI)

53.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Folate_rec	PF03024	71 - 191	7.5e-15	Folate receptor family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27830 AT5G27830 AT5G27830 AT5G27830 AT5G27830 AT5G27830
fragaria_vesca	FvH4_6g06800 FvH4_6g06800 FvH4_6g06800
malus_domestica	MD04G1198500.v1.1
prunus_persica	Prupe.6G319500_v2.0.a1
pyrus_communis	pycom04g17560 pycom12g19820
rosa_chinensis	RchiOBHm_Chr2g0123281 RchiOBHm_Chr3g0456161 RchiOBHm_Chr3g0458101 RchiOBHm_Chr4g0442861 RchiOBHm_Chr4g0442871 RchiOBHm_Chr4g0442951
rosa_laevigata	RLG00000005970 RLG00000010014
rosa_multiflora	Rmu_sc0000121.1_g000021 Rmu_sc0000124.1_g000039 Rmu_sc0000279.1_g000039 Rmu_sc0000384.1_g000020 Rmu_sc0001917.1_g000005 Rmu_sc0002607.1_g000043 Rmu_sc0007295.1_g000002 Rmu_sc0042689.1_g000001
rosa_roxburghii	Rroxscaffold_6G00423260 Rroxscaffold_6G00423720
rosa_rugosa	Rorug03G0012000 Rorug03G0012100 Rorug04G0109700 Rorug04G0343700
rosa_samantha	Rh1CG037400 Rh2BG184700 Rh2BG311600 Rh3AG072300 Rh3AG085600 Rh3BG074200 Rh3BG088300 Rh3CG073700 Rh3DG075500 Rh3DG089200 Rh4AG396600 Rh4AG396900 Rh4AG397000 Rh4AG397400 Rh4AG397800 Rh4BG409300 Rh4CG424800 Rh4DG403200 Rh4DG403500 Rh4DG403600 Rh4DG404100 Rh5BG556500 Rh6BG383200
rosa_wichuraiana	Rw2G024280 Rw3G005860 Rw3G006140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	475
AccB1I	GGYRCC	1 cut(s)	685
AccB7I	CCANNNNNTGG	1 cut(s)	20
AciI	CCGC	3 cut(s)	247, 382, 656
AclWI	GGATC	1 cut(s)	371
AcsI	RAATTY	1 cut(s)	557
AdeI	CACNNNGTG	1 cut(s)	500
AfaI	GTAC	3 cut(s)	393, 862, 890
AfiI	CCNNNNNNNGG	3 cut(s)	20, 386, 537
AgsI	TTSAA	1 cut(s)	442
AjnI	CCWGG	4 cut(s)	397, 606, 726, 767
AluBI	AGCT	6 cut(s)	42, 326, 638, 705, 848, 899
AluI	AGCT	6 cut(s)	42, 326, 638, 705, 848, 899
AlwI	GGATC	1 cut(s)	371
Ama87I	CYCGRG	1 cut(s)	55
AoxI	GGCC	1 cut(s)	799
ApeKI	GCWGC	4 cut(s)	91, 569, 712, 848
ApoI	RAATTY	1 cut(s)	557
AspLEI	GCGC	1 cut(s)	837
AspS9I	GGNCC	3 cut(s)	215, 401, 787
AsuC2I	CCSGG	1 cut(s)	434
AsuHPI	GGTGA	2 cut(s)	332, 602
AvaI	CYCGRG	1 cut(s)	55
AvaII	GGWCC	3 cut(s)	215, 401, 787
BaeGI	GKGCMC	1 cut(s)	690
BanI	GGYRCC	1 cut(s)	685
BbsI	GAAGAC	2 cut(s)	114, 430
BbvI	GCAGC	4 cut(s)	78, 556, 699, 835
BciT130I	CCWGG	4 cut(s)	399, 608, 728, 769
BcnI	CCSGG	1 cut(s)	434
BfaI	CTAG	3 cut(s)	491, 639, 716
BfmI	CTRYAG	1 cut(s)	570
BfoI	RGCGCY	1 cut(s)	838
BfuAI	ACCTGC	1 cut(s)	475
BglII	AGATCT	1 cut(s)	223
BisI	GCNGC	4 cut(s)	92, 570, 713, 849
BlsI	GCNGC	4 cut(s)	93, 571, 714, 850
Bme1390I	CCNGG	5 cut(s)	399, 434, 608, 728, 769
Bme18I	GGWCC	3 cut(s)	215, 401, 787
BmeT110I	CYCGRG	1 cut(s)	55
BmgT120I	GGNCC	3 cut(s)	215, 401, 787
BmiI	GGNNCC	6 cut(s)	25, 114, 216, 217, 672, 687
BmrFI	CCNGG	5 cut(s)	399, 434, 608, 728, 769
BmsI	GCATC	1 cut(s)	463
BpiI	GAAGAC	2 cut(s)	114, 430
BpmI	CTGGAG	1 cut(s)	390
BpuEI	CTTGAG	1 cut(s)	727
BpuMI	CCSGG	1 cut(s)	434
BsaJI	CCNNGG	2 cut(s)	154, 768
BsaXI	ACNNNNNCTCC	2 cut(s)	771, 801
Bsc4I	CCNNNNNNNGG	3 cut(s)	20, 386, 537
Bse1I	ACTGG	3 cut(s)	114, 407, 879
BseBI	CCWGG	4 cut(s)	399, 608, 728, 769
BseDI	CCNNGG	2 cut(s)	154, 768
BseGI	GGATG	1 cut(s)	280
BseLI	CCNNNNNNNGG	3 cut(s)	20, 386, 537
BseMII	CTCAG	4 cut(s)	174, 345, 525, 672
BseNI	ACTGG	3 cut(s)	114, 407, 879
BseRI	GAGGAG	1 cut(s)	734
BseSI	GKGCMC	1 cut(s)	690
BseXI	GCAGC	4 cut(s)	78, 556, 699, 835
BshFI	GGCC	1 cut(s)	801
BshNI	GGYRCC	1 cut(s)	685
BsiHKCI	CYCGRG	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	433
BslFI	GGGAC	1 cut(s)	228
BslI	CCNNNNNNNGG	3 cut(s)	20, 386, 537
BsmFI	GGGAC	1 cut(s)	228
BsnI	GGCC	1 cut(s)	801
BsoBI	CYCGRG	1 cut(s)	55
Bsp1286I	GDGCHC	1 cut(s)	690
Bsp1407I	TGTACA	1 cut(s)	391
Bsp143I	GATC	3 cut(s)	84, 223, 376
BspACI	CCGC	3 cut(s)	247, 382, 656
BspANI	GGCC	1 cut(s)	801
BspCNI	CTCAG	4 cut(s)	175, 344, 526, 673
BspLI	GGNNCC	6 cut(s)	25, 114, 216, 217, 672, 687
BspMAI	CTGCAG	1 cut(s)	574
BspMI	ACCTGC	1 cut(s)	475
BspPI	GGATC	1 cut(s)	371
BspT107I	GGYRCC	1 cut(s)	685
BsrGI	TGTACA	1 cut(s)	391
BsrI	ACTGG	3 cut(s)	114, 407, 879
BssECI	CCNNGG	2 cut(s)	154, 768
BssMI	GATC	3 cut(s)	84, 223, 376
BssT1I	CCWWGG	1 cut(s)	154
Bst2UI	CCWGG	4 cut(s)	399, 608, 728, 769
Bst6I	CTCTTC	1 cut(s)	184
BstAPI	GCANNNNNTGC	1 cut(s)	578
BstAUI	TGTACA	1 cut(s)	391
BstC8I	GCNNGC	2 cut(s)	341, 799
BstDEI	CTNAG	4 cut(s)	183, 331, 534, 681
BstF5I	GGATG	1 cut(s)	280
BstH2I	RGCGCY	1 cut(s)	838
BstHHI	GCGC	1 cut(s)	837
BstKTI	GATC	3 cut(s)	87, 226, 379
BstMBI	GATC	3 cut(s)	84, 223, 376
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 578
BstNI	CCWGG	4 cut(s)	399, 608, 728, 769
BstSCI	CCNGG	5 cut(s)	397, 432, 606, 726, 767
BstSFI	CTRYAG	1 cut(s)	570
BstSLI	GKGCMC	1 cut(s)	690
BstV1I	GCAGC	4 cut(s)	78, 556, 699, 835
BstV2I	GAAGAC	2 cut(s)	114, 430
BstX2I	RGATCY	1 cut(s)	223
BstXI	CCANNNNNNTGG	1 cut(s)	698
BstYI	RGATCY	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	801
BtsCI	GGATG	1 cut(s)	280
BtsIMutI	CAGTG	1 cut(s)	107
BveI	ACCTGC	1 cut(s)	475
Cac8I	GCNNGC	2 cut(s)	341, 799
CfoI	GCGC	1 cut(s)	837
Cfr13I	GGNCC	3 cut(s)	215, 401, 787
Csp6I	GTAC	3 cut(s)	392, 861, 889
CviAII	CATG	3 cut(s)	566, 663, 911
CviQI	GTAC	3 cut(s)	392, 861, 889
DdeI	CTNAG	4 cut(s)	183, 331, 534, 681
DpnI	GATC	3 cut(s)	86, 225, 378
DpnII	GATC	3 cut(s)	84, 223, 376
DraIII	CACNNNGTG	1 cut(s)	500
Eam1104I	CTCTTC	1 cut(s)	184
EarI	CTCTTC	1 cut(s)	184
Eco130I	CCWWGG	1 cut(s)	154
Eco147I	AGGCCT	1 cut(s)	801
Eco47I	GGWCC	3 cut(s)	215, 401, 787
Eco88I	CYCGRG	1 cut(s)	55
EcoO109I	RGGNCCY	2 cut(s)	215, 401
EcoRI	GAATTC	1 cut(s)	557
EcoRII	CCWGG	4 cut(s)	397, 606, 726, 767
EcoT14I	CCWWGG	1 cut(s)	154
ErhI	CCWWGG	1 cut(s)	154
FaeI	CATG	3 cut(s)	569, 666, 914
FalI	AAGNNNNNCTT	2 cut(s)	627, 659
FaqI	GGGAC	1 cut(s)	228
FatI	CATG	3 cut(s)	565, 662, 910
FauI	CCCGC	1 cut(s)	389
Fnu4HI	GCNGC	4 cut(s)	92, 570, 713, 849
FokI	GGATG	1 cut(s)	267
Fsp4HI	GCNGC	4 cut(s)	92, 570, 713, 849
FspBI	CTAG	3 cut(s)	491, 639, 716
GlaI	GCGC	1 cut(s)	836
GluI	GCNGC	4 cut(s)	92, 570, 713, 849
GsuI	CTGGAG	1 cut(s)	390
HaeII	RGCGCY	1 cut(s)	838
HaeIII	GGCC	1 cut(s)	801
HapII	CCGG	1 cut(s)	433
HhaI	GCGC	1 cut(s)	837
Hin1II	CATG	3 cut(s)	569, 666, 914
Hin6I	GCGC	1 cut(s)	835
HinP1I	GCGC	1 cut(s)	835
HinfI	GANTC	4 cut(s)	29, 204, 541, 659
HpaII	CCGG	1 cut(s)	433
HphI	GGTGA	2 cut(s)	332, 602
Hpy166II	GTNNAC	2 cut(s)	392, 758
Hpy188I	TCNGA	9 cut(s)	28, 38, 84, 184, 291, 334, 535, 601, 682
Hpy188III	TCNNGA	2 cut(s)	57, 644
Hpy8I	GTNNAC	2 cut(s)	392, 758
HpyAV	CCTTC	3 cut(s)	54, 661, 810
HpyCH4IV	ACGT	1 cut(s)	887
HpyCH4V	TGCA	5 cut(s)	147, 237, 343, 476, 572
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 578
HpyF3I	CTNAG	4 cut(s)	183, 331, 534, 681
HpySE526I	ACGT	1 cut(s)	887
Hsp92II	CATG	3 cut(s)	569, 666, 914
HspAI	GCGC	1 cut(s)	835
KflI	GGGWCCC	1 cut(s)	215
Kzo9I	GATC	3 cut(s)	84, 223, 376
LmnI	GCTCC	2 cut(s)	99, 702
Lsp1109I	GCAGC	4 cut(s)	78, 556, 699, 835
LweI	GCATC	1 cut(s)	463
MaeI	CTAG	3 cut(s)	491, 639, 716
MaeII	ACGT	1 cut(s)	887
MaeIII	GTNAC	1 cut(s)	428
MalI	GATC	3 cut(s)	86, 225, 378
MboI	GATC	3 cut(s)	84, 223, 376
MboII	GAAGA	4 cut(s)	114, 171, 430, 623
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	1 cut(s)	690
MluCI	AATT	4 cut(s)	131, 344, 353, 557
MlyI	GAGTC	2 cut(s)	38, 213
MseI	TTAA	3 cut(s)	506, 546, 585
MspI	CCGG	1 cut(s)	433
MspR9I	CCNGG	5 cut(s)	399, 434, 608, 728, 769
MvaI	CCWGG	4 cut(s)	399, 608, 728, 769
MwoI	GCNNNNNNNGC	2 cut(s)	293, 578
NciI	CCSGG	1 cut(s)	434
NdeII	GATC	3 cut(s)	84, 223, 376
NlaIII	CATG	3 cut(s)	569, 666, 914
NlaIV	GGNNCC	6 cut(s)	25, 114, 216, 217, 672, 687
NmuCI	GTSAC	1 cut(s)	428
PaeR7I	CTCGAG	1 cut(s)	55
PceI	AGGCCT	1 cut(s)	801
PfeI	GAWTC	2 cut(s)	541, 659
PflFI	GACNNNGTC	1 cut(s)	434
PflMI	CCANNNNNTGG	1 cut(s)	20
PfoI	TCCNGGA	1 cut(s)	726
PkrI	GCNGC	4 cut(s)	93, 571, 714, 850
PleI	GAGTC	2 cut(s)	37, 212
PpsI	GAGTC	2 cut(s)	37, 212
PpuMI	RGGWCCY	2 cut(s)	215, 401
Psp5II	RGGWCCY	2 cut(s)	215, 401
Psp6I	CCWGG	4 cut(s)	397, 606, 726, 767
PspGI	CCWGG	4 cut(s)	397, 606, 726, 767
PspN4I	GGNNCC	6 cut(s)	25, 114, 216, 217, 672, 687
PspPI	GGNCC	3 cut(s)	215, 401, 787
PspPPI	RGGWCCY	2 cut(s)	215, 401
PstI	CTGCAG	1 cut(s)	574
PsuI	RGATCY	1 cut(s)	223
PsyI	GACNNNGTC	1 cut(s)	434
RsaI	GTAC	3 cut(s)	393, 862, 890
RsaNI	GTAC	3 cut(s)	392, 861, 889
SaqAI	TTAA	3 cut(s)	506, 546, 585
SatI	GCNGC	4 cut(s)	92, 570, 713, 849
Sau3AI	GATC	3 cut(s)	84, 223, 376
Sau96I	GGNCC	3 cut(s)	215, 401, 787
SchI	GAGTC	2 cut(s)	38, 213
ScrFI	CCNGG	5 cut(s)	399, 434, 608, 728, 769
SduI	GDGCHC	1 cut(s)	690
SfaNI	GCATC	1 cut(s)	463
SfcI	CTRYAG	1 cut(s)	570
Sfr274I	CTCGAG	1 cut(s)	55
SinI	GGWCC	3 cut(s)	215, 401, 787
SlaI	CTCGAG	1 cut(s)	55
SmlI	CTYRAG	2 cut(s)	55, 706
SmoI	CTYRAG	2 cut(s)	55, 706
Sse9I	AATT	4 cut(s)	131, 344, 353, 557
SseBI	AGGCCT	1 cut(s)	801
SsiI	CCGC	3 cut(s)	247, 382, 656
SspMI	CTAG	3 cut(s)	491, 639, 716
StuI	AGGCCT	1 cut(s)	801
StyD4I	CCNGG	5 cut(s)	397, 432, 606, 726, 767
StyI	CCWWGG	1 cut(s)	154
TaiI	ACGT	1 cut(s)	890
TaqI	TCGA	1 cut(s)	56
TasI	AATT	4 cut(s)	131, 344, 353, 557
TatI	WGTACW	1 cut(s)	391
TfiI	GAWTC	2 cut(s)	541, 659
Tru1I	TTAA	3 cut(s)	506, 546, 585
Tru9I	TTAA	3 cut(s)	506, 546, 585
TscAI	CASTG	1 cut(s)	114
TseFI	GTSAC	1 cut(s)	428
TseI	GCWGC	4 cut(s)	91, 569, 712, 848
Tsp45I	GTSAC	1 cut(s)	428
TspDTI	ATGAA	1 cut(s)	651
TspRI	CASTG	1 cut(s)	114
Tth111I	GACNNNGTC	1 cut(s)	434
Van91I	CCANNNNNTGG	1 cut(s)	20
VpaK11BI	GGWCC	3 cut(s)	215, 401, 787
XapI	RAATTY	1 cut(s)	557
XcmI	CCANNNNNNNNNTGG	2 cut(s)	304, 871
XhoI	CTCGAG	1 cut(s)	55
XspI	CTAG	3 cut(s)	491, 639, 716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.