Rh2BG311600

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001032
Physical Location & Seq
Forward (+)
36502102 .. 36532452
30351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG311600.1

Sequence Viewer

Length: 1410 bp
ATGGTTGAAGCACAACAGGTTTTCAATGATATGTTGAAAAGAGGAATTACTCCTGACCGTCATGTCTTTGGTATTCTGATAAGAGGGTATTGTGATGAGGGTAATGATGTTGCCATTTTAGGTTTGCATGATGAAATGAGAAAGAGAGGACTTGTAGTCACAGGAGGCACACCCTGCACTGCTATCCATAAGAAAGTCGTCTTCAAGAGGGAAAGCTGGCTCAGAATTCTTGCAATTATGGAATTATTGGAATGTTCCATCTGCGGTCCTCGCATTGGTGTAGAGCAAGGACCTCCAGTTATATGTGCCTCGTTCTGTGACAGGGTCTTCAAGGCTTGTGCCGAGGCTTACTACTTGAGGGATGCAATAACACAGGCCACGGAGTACATGTATCACACTAGCAAAAGATTTATGACACCAGTAAAAAATCCAAATAGCCACAGCCCCTCGCAACTAATTCTTGTGTTACTCAAGATGTACCTGCTGAATTGGGAGACTGATGAAGCATTGAAGCAAACCTGCAAGCTGCAGCTCTTTTTATTTAGCAACGACACATCTAGGGAAGGCTCTTGGAGGGACAATATCATCATCATCATCATCATGGACAGCCTTGAAGAGAGAGTTTCTGTGTTTTACCATGAAAATTCCGATGAATATGATCATAATTCCTCCGATTATGAATTCGATGATGACGCTGGCGATTCTGATGCCAAACGACAGAGGATCTTGTACTGGGAATCACAACAAGCTTTGCTTCAGGAGATTTTAGAACGAAGCAGATTAACCGGATCAAAGTTGCGGCAAGAGGTTCGCGAAATCACAGAGAAAGCGAGATCAGAGCAAAGAGATTTGTGTCGATGCCACAAACCTAATGTTGATGCATGCAACAACTGCTTGCGACATGGAATCGTCAACTCGCTTTGCGATAAAGGATTTAAAGCCTCTCTATGCATATCAAAATGGTCCGAAACCAAAAAAATTCCAGGAGGGACTCATGAGTACATCGAAGTCACTGGAAACACGTCCACAAGCCGAACAAAGCAACTTTTCTATGTAGTTGAACTGGAATTTGGTGATCAATTCGAGATTGCAAAAGCATGCAATGAGTACCGAAATCTCGTAAGGATGTTACCACAAACTTATGTAGGAAAAGCTGACTACCTCAAGGCCATTGTTCGAATTGTATGCGATGCAGCCAAGCGATCAATGAAGGAAAGCAGAATGCATATGGGTCCGTGGCGAAAGAGAGGCTTCATGCTAATGAAATGGTCGGCTTCCATTGAGAGGTTGGCTTCTGTTGAATCGGTATCAACATCAAATAGATATAACGTGCAATCATTACTTTCATCAGAGAGAGCGCATGCATCATCTTATAGATACTTTGCAGCTCCAACTGTAGTAGTCACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

469

Amino Acids

53.82

Weight (kDa)

8.24

Isoelectric Point (pI)

50.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 2 - 32 3.4e-07 PPR repeat family
PDDEXK_6 PF04720 209 - 429 1.6e-59 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 62
Acc36I ACCTGC 2 cut(s) 489, 527
AccII CGCG 1 cut(s) 813
AciI CCGC 2 cut(s) 264, 799
AclWI GGATC 2 cut(s) 731, 796
AcsI RAATTY 5 cut(s) 225, 643, 680, 978, 1067
AcuI CTGAAG 1 cut(s) 740
AfaI GTAC 5 cut(s) 386, 479, 731, 1001, 1109
AfiI CCNNNNNNNGG 2 cut(s) 275, 1284
AflIII ACRYGT 2 cut(s) 387, 1020
AgsI TTSAA 9 cut(s) 8, 25, 37, 205, 331, 511, 614, 1061, 1301
AhdI GACNNNNNGTC 1 cut(s) 155
AjiI CACGTC 1 cut(s) 1023
AjnI CCWGG 1 cut(s) 982
AjuI GAANNNNNNNTTGG 2 cut(s) 1053, 1085
AluBI AGCT 6 cut(s) 216, 526, 532, 749, 1154, 1388
AluI AGCT 6 cut(s) 216, 526, 532, 749, 1154, 1388
Alw26I GTCTC 1 cut(s) 488
AlwI GGATC 2 cut(s) 731, 796
AoxI GGCC 2 cut(s) 375, 1167
ApeKI GCWGC 4 cut(s) 526, 529, 1193, 1385
ApoI RAATTY 5 cut(s) 225, 643, 680, 978, 1067
AspLEI GCGC 1 cut(s) 1360
AspS9I GGNCC 4 cut(s) 266, 290, 963, 1232
AsuHPI GGTGA 1 cut(s) 1085
AsuII TTCGAA 1 cut(s) 1177
AvaII GGWCC 4 cut(s) 266, 290, 963, 1232
BbsI GAAGAC 2 cut(s) 193, 319
BbvI GCAGC 4 cut(s) 513, 541, 1205, 1397
BccI CCATC 1 cut(s) 266
BcgI CGANNNNNNTGC 6 cut(s) 689, 723, 791, 825, 1167, 1201
BciT130I CCWGG 1 cut(s) 984
BclI TGATCA 2 cut(s) 658, 1075
BcoDI GTCTC 1 cut(s) 488
BfaI CTAG 2 cut(s) 399, 558
BfmI CTRYAG 2 cut(s) 527, 1395
BfuAI ACCTGC 2 cut(s) 489, 527
BisI GCNGC 5 cut(s) 527, 530, 800, 1194, 1386
BlsI GCNGC 5 cut(s) 528, 531, 801, 1195, 1387
Bme1390I CCNGG 1 cut(s) 984
Bme18I GGWCC 4 cut(s) 266, 290, 963, 1232
BmeRI GACNNNNNGTC 1 cut(s) 155
BmgBI CACGTC 1 cut(s) 1023
BmgT120I GGNCC 4 cut(s) 266, 290, 963, 1232
BmiI GGNNCC 1 cut(s) 1233
BmrFI CCNGG 1 cut(s) 984
BmrI ACTGGG 1 cut(s) 742
BmsI GCATC 6 cut(s) 352, 697, 848, 868, 1180, 1373
BmuI ACTGGG 1 cut(s) 742
BpiI GAAGAC 2 cut(s) 193, 319
BpmI CTGGAG 1 cut(s) 279
Bpu14I TTCGAA 1 cut(s) 1177
BpuEI CTTGAG 3 cut(s) 376, 455, 1148
BsaAI YACGTR 1 cut(s) 1407
BsaJI CCNNGG 3 cut(s) 342, 378, 1235
BsaWI WCCGGW 1 cut(s) 785
BsaXI ACNNNNNCTCC 2 cut(s) 374, 404
Bsc4I CCNNNNNNNGG 2 cut(s) 275, 1284
Bse1I ACTGG 5 cut(s) 296, 419, 737, 1018, 1068
Bse3DI GCAATG 1 cut(s) 1108
BseBI CCWGG 1 cut(s) 984
BseDI CCNNGG 3 cut(s) 342, 378, 1235
BseGI GGATG 2 cut(s) 367, 1131
BseLI CCNNNNNNNGG 2 cut(s) 275, 1284
BseMI GCAATG 1 cut(s) 1108
BseMII CTCAG 1 cut(s) 235
BseNI ACTGG 5 cut(s) 296, 419, 737, 1018, 1068
BseXI GCAGC 4 cut(s) 513, 541, 1205, 1397
BsgI GTGCAG 1 cut(s) 160
Bsh1236I CGCG 1 cut(s) 813
BshFI GGCC 2 cut(s) 377, 1169
BsiSI CCGG 1 cut(s) 786
BslFI GGGAC 2 cut(s) 590, 1003
BslI CCNNNNNNNGG 2 cut(s) 275, 1284
BsmAI GTCTC 1 cut(s) 488
BsmFI GGGAC 2 cut(s) 590, 1003
BsmI GAATGC 1 cut(s) 1227
BsnI GGCC 2 cut(s) 377, 1169
Bsp119I TTCGAA 1 cut(s) 1177
Bsp143I GATC 6 cut(s) 658, 723, 788, 833, 1075, 1202
Bsp68I TCGCGA 1 cut(s) 813
BspACI CCGC 2 cut(s) 264, 799
BspANI GGCC 2 cut(s) 377, 1169
BspCNI CTCAG 1 cut(s) 234
BspFNI CGCG 1 cut(s) 813
BspHI TCATGA 1 cut(s) 994
BspLI GGNNCC 1 cut(s) 1233
BspMAI CTGCAG 1 cut(s) 531
BspMI ACCTGC 2 cut(s) 489, 527
BspPI GGATC 2 cut(s) 731, 796
BspT104I TTCGAA 1 cut(s) 1177
BsrDI GCAATG 1 cut(s) 1108
BsrI ACTGG 5 cut(s) 296, 419, 737, 1018, 1068
BssECI CCNNGG 3 cut(s) 342, 378, 1235
BssMI GATC 6 cut(s) 658, 723, 788, 833, 1075, 1202
Bst2UI CCWGG 1 cut(s) 984
Bst4CI ACNGT 2 cut(s) 59, 1396
Bst6I CTCTTC 1 cut(s) 609
BstAPI GCANNNNNTGC 2 cut(s) 174, 891
BstBAI YACGTR 1 cut(s) 1407
BstBI TTCGAA 1 cut(s) 1177
BstC8I GCNNGC 7 cut(s) 218, 524, 697, 883, 896, 1099, 1362
BstDEI CTNAG 1 cut(s) 221
BstDSI CCRYGG 2 cut(s) 378, 1235
BstF5I GGATG 2 cut(s) 367, 1131
BstFNI CGCG 1 cut(s) 813
BstHHI GCGC 1 cut(s) 1360
BstKTI GATC 6 cut(s) 661, 726, 791, 836, 1078, 1205
BstMAI GTCTC 1 cut(s) 488
BstMBI GATC 6 cut(s) 658, 723, 788, 833, 1075, 1202
BstMWI GCNNNNNNNGC 3 cut(s) 174, 270, 891
BstNI CCWGG 1 cut(s) 984
BstNSI RCATGY 4 cut(s) 391, 885, 1101, 1364
BstSCI CCNGG 1 cut(s) 982
BstSFI CTRYAG 2 cut(s) 527, 1395
BstUI CGCG 1 cut(s) 813
BstV1I GCAGC 4 cut(s) 513, 541, 1205, 1397
BstV2I GAAGAC 2 cut(s) 193, 319
BstX2I RGATCY 1 cut(s) 723
BstYI RGATCY 1 cut(s) 723
BsuRI GGCC 2 cut(s) 377, 1169
BtgI CCRYGG 2 cut(s) 378, 1235
BtgZI GCGATG 1 cut(s) 1203
BtrI CACGTC 1 cut(s) 1023
BtsCI GGATG 2 cut(s) 367, 1131
BtsI GCAGTG 1 cut(s) 177
BtsIMutI CAGTG 2 cut(s) 177, 1011
BtuMI TCGCGA 1 cut(s) 813
BveI ACCTGC 2 cut(s) 489, 527
Cac8I GCNNGC 7 cut(s) 218, 524, 697, 883, 896, 1099, 1362
CciI TCATGA 1 cut(s) 994
CfoI GCGC 1 cut(s) 1360
Cfr13I GGNCC 4 cut(s) 266, 290, 963, 1232
CseI GACGC 1 cut(s) 701
Csp6I GTAC 5 cut(s) 385, 478, 730, 1000, 1108
CviQI GTAC 5 cut(s) 385, 478, 730, 1000, 1108
DdeI CTNAG 1 cut(s) 221
DpnI GATC 6 cut(s) 660, 725, 790, 835, 1077, 1204
DpnII GATC 6 cut(s) 658, 723, 788, 833, 1075, 1202
DraI TTTAAA 1 cut(s) 937
DrdI GACNNNNNNGTC 1 cut(s) 62
DriI GACNNNNNGTC 1 cut(s) 155
DseDI GACNNNNNNGTC 1 cut(s) 62
Eam1104I CTCTTC 1 cut(s) 609
Eam1105I GACNNNNNGTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 609
Eco47I GGWCC 4 cut(s) 266, 290, 963, 1232
Eco57I CTGAAG 1 cut(s) 740
EcoO109I RGGNCCY 1 cut(s) 290
EcoRI GAATTC 2 cut(s) 225, 680
EcoRII CCWGG 1 cut(s) 982
EcoT22I ATGCAT 4 cut(s) 883, 953, 1227, 1366
FalI AAGNNNNNCTT 4 cut(s) 738, 770, 1235, 1267
FaqI GGGAC 2 cut(s) 590, 1003
FauNDI CATATG 1 cut(s) 1227
FbaI TGATCA 2 cut(s) 658, 1075
Fnu4HI GCNGC 5 cut(s) 527, 530, 800, 1194, 1386
FokI GGATG 2 cut(s) 374, 1138
Fsp4HI GCNGC 5 cut(s) 527, 530, 800, 1194, 1386
FspBI CTAG 2 cut(s) 399, 558
GlaI GCGC 1 cut(s) 1359
GluI GCNGC 5 cut(s) 527, 530, 800, 1194, 1386
GsuI CTGGAG 1 cut(s) 279
HaeIII GGCC 2 cut(s) 377, 1169
HapII CCGG 1 cut(s) 786
HgaI GACGC 1 cut(s) 701
HhaI GCGC 1 cut(s) 1360
Hin6I GCGC 1 cut(s) 1358
HinP1I GCGC 1 cut(s) 1358
HincII GTYRAC 1 cut(s) 913
HindII GTYRAC 1 cut(s) 913
HindIII AAGCTT 1 cut(s) 747
HinfI GANTC 5 cut(s) 701, 737, 906, 991, 1301
HpaII CCGG 1 cut(s) 786
HphI GGTGA 1 cut(s) 1085
Hpy166II GTNNAC 2 cut(s) 913, 1026
Hpy188I TCNGA 8 cut(s) 78, 224, 649, 673, 706, 838, 967, 1351
Hpy188III TCNNGA 7 cut(s) 53, 205, 472, 758, 812, 995, 1084
Hpy8I GTNNAC 2 cut(s) 913, 1026
HpyAV CCTTC 2 cut(s) 557, 1204
HpyCH4III ACNGT 2 cut(s) 59, 1396
HpyCH4IV ACGT 3 cut(s) 1022, 1329, 1406
HpyF10VI GCNNNNNNNGC 3 cut(s) 174, 270, 891
HpyF3I CTNAG 1 cut(s) 221
HpySE526I ACGT 3 cut(s) 1022, 1329, 1406
HspAI GCGC 1 cut(s) 1358
Ksp22I TGATCA 2 cut(s) 658, 1075
Kzo9I GATC 6 cut(s) 658, 723, 788, 833, 1075, 1202
LmnI GCTCC 1 cut(s) 1393
Lsp1109I GCAGC 4 cut(s) 513, 541, 1205, 1397
LweI GCATC 6 cut(s) 352, 697, 848, 868, 1180, 1373
MaeI CTAG 2 cut(s) 399, 558
MaeII ACGT 3 cut(s) 1022, 1329, 1406
MaeIII GTNAC 6 cut(s) 157, 317, 465, 1009, 1128, 1402
MalI GATC 6 cut(s) 660, 725, 790, 835, 1077, 1204
MboI GATC 6 cut(s) 658, 723, 788, 833, 1075, 1202
MboII GAAGA 3 cut(s) 193, 319, 626
MflI RGATCY 1 cut(s) 723
MlyI GAGTC 1 cut(s) 985
Mph1103I ATGCAT 4 cut(s) 883, 953, 1227, 1366
MseI TTAA 2 cut(s) 782, 936
MslI CAYNNNNRTG 2 cut(s) 599, 1259
MspI CCGG 1 cut(s) 786
MspR9I CCNGG 1 cut(s) 984
Mva1269I GAATGC 1 cut(s) 1227
MvaI CCWGG 1 cut(s) 984
MvnI CGCG 1 cut(s) 813
MwoI GCNNNNNNNGC 3 cut(s) 174, 270, 891
NdeI CATATG 1 cut(s) 1227
NdeII GATC 6 cut(s) 658, 723, 788, 833, 1075, 1202
NlaIV GGNNCC 1 cut(s) 1233
NmeAIII GCCGAG 1 cut(s) 367
NmuCI GTSAC 4 cut(s) 157, 317, 1009, 1402
NruI TCGCGA 1 cut(s) 813
NsiI ATGCAT 4 cut(s) 883, 953, 1227, 1366
NspI RCATGY 4 cut(s) 391, 885, 1101, 1364
NspV TTCGAA 1 cut(s) 1177
PaeI GCATGC 3 cut(s) 885, 1101, 1364
PagI TCATGA 1 cut(s) 994
PciI ACATGT 1 cut(s) 387
PctI GAATGC 1 cut(s) 1227
PfeI GAWTC 4 cut(s) 701, 737, 906, 1301
PflFI GACNNNGTC 1 cut(s) 323
PfoI TCCNGGA 1 cut(s) 982
PkrI GCNGC 5 cut(s) 528, 531, 801, 1195, 1387
PleI GAGTC 1 cut(s) 985
PpsI GAGTC 1 cut(s) 985
Ppu21I YACGTR 1 cut(s) 1407
PpuMI RGGWCCY 1 cut(s) 290
PscI ACATGT 1 cut(s) 387
Psp5II RGGWCCY 1 cut(s) 290
Psp6I CCWGG 1 cut(s) 982
PspGI CCWGG 1 cut(s) 982
PspN4I GGNNCC 1 cut(s) 1233
PspPI GGNCC 4 cut(s) 266, 290, 963, 1232
PspPPI RGGWCCY 1 cut(s) 290
PstI CTGCAG 1 cut(s) 531
PsuI RGATCY 1 cut(s) 723
PsyI GACNNNGTC 1 cut(s) 323
RruI TCGCGA 1 cut(s) 813
RsaI GTAC 5 cut(s) 386, 479, 731, 1001, 1109
RsaNI GTAC 5 cut(s) 385, 478, 730, 1000, 1108
RseI CAYNNNNRTG 2 cut(s) 599, 1259
SaqAI TTAA 2 cut(s) 782, 936
SatI GCNGC 5 cut(s) 527, 530, 800, 1194, 1386
Sau3AI GATC 6 cut(s) 658, 723, 788, 833, 1075, 1202
Sau96I GGNCC 4 cut(s) 266, 290, 963, 1232
SchI GAGTC 1 cut(s) 985
ScrFI CCNGG 1 cut(s) 984
SfaNI GCATC 6 cut(s) 352, 697, 848, 868, 1180, 1373
SfcI CTRYAG 2 cut(s) 527, 1395
SfuI TTCGAA 1 cut(s) 1177
SinI GGWCC 4 cut(s) 266, 290, 963, 1232
SmiMI CAYNNNNRTG 2 cut(s) 599, 1259
SmlI CTYRAG 3 cut(s) 355, 470, 1163
SmoI CTYRAG 3 cut(s) 355, 470, 1163
SphI GCATGC 3 cut(s) 885, 1101, 1364
SsiI CCGC 2 cut(s) 264, 799
SspMI CTAG 2 cut(s) 399, 558
StyD4I CCNGG 1 cut(s) 982
TaaI ACNGT 2 cut(s) 59, 1396
TaiI ACGT 3 cut(s) 1025, 1332, 1409
TaqI TCGA 5 cut(s) 684, 856, 1005, 1083, 1177
TatI WGTACW 3 cut(s) 384, 729, 999
TauI GCSGC 1 cut(s) 802
TfiI GAWTC 4 cut(s) 701, 737, 906, 1301
Tru1I TTAA 2 cut(s) 782, 936
Tru9I TTAA 2 cut(s) 782, 936
TscAI CASTG 2 cut(s) 184, 1018
TseFI GTSAC 4 cut(s) 157, 317, 1009, 1402
TseI GCWGC 4 cut(s) 526, 529, 1193, 1385
Tsp45I GTSAC 4 cut(s) 157, 317, 1009, 1402
TspDTI ATGAA 9 cut(s) 147, 516, 654, 666, 693, 1223, 1243, 1277, 1335
TspGWI ACGGA 2 cut(s) 395, 1224
TspRI CASTG 2 cut(s) 184, 1018
Tth111I GACNNNGTC 1 cut(s) 323
VpaK11BI GGWCC 4 cut(s) 266, 290, 963, 1232
XapI RAATTY 5 cut(s) 225, 643, 680, 978, 1067
XceI RCATGY 4 cut(s) 391, 885, 1101, 1364
XcmI CCANNNNNNNNNTGG 1 cut(s) 1285
XspI CTAG 2 cut(s) 399, 558
Zsp2I ATGCAT 4 cut(s) 883, 953, 1227, 1366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.