Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042689.1

Orthogroup ID

OG0001032

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 2028

Gene Structure 2027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042689.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 371 bp

atggttgaagcacaacaggttttcgatgatatgctgaaaagaggaattactcctgaccgtcacgtctttggtattctgataagagggtattgtgatgagggtaatgatgttgccattttaggtttgcacgatgacatgagaaagagagggcttgtagtcacaggagggaggagtcttgcaagacctccaaattggagtttcctgatgcagacacatgttaagagatcaaaacttccttcagatgcagctgactctgtgatggaagctgtcccattattgacaaatgttctgcaatatcatgatgctaaggttttggagcatgcttctgtatgtctgacccaaattgctgaatcatttgcatcatcgcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006464 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016020 GO:0016043 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022402 GO:0030154 GO:0032446 GO:0032502 GO:0032989 GO:0034641 GO:0034645 GO:0036211 GO:0042023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048468 GO:0048856 GO:0048869 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0090558 GO:0090626 GO:0140096 GO:1901360 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

HECT

Protein Analysis

123

Amino Acids

13.6

Weight (kDa)

6.17

Isoelectric Point (pI)

39.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27830 AT5G27830 AT5G27830 AT5G27830 AT5G27830 AT5G27830
fragaria_vesca	FvH4_6g06800 FvH4_6g06800 FvH4_6g06800
malus_domestica	MD04G1198500.v1.1
prunus_persica	Prupe.6G319500_v2.0.a1
pyrus_communis	pycom04g17560 pycom12g19820
rosa_chinensis	RchiOBHm_Chr2g0123281 RchiOBHm_Chr3g0456161 RchiOBHm_Chr3g0458101 RchiOBHm_Chr4g0442861 RchiOBHm_Chr4g0442871 RchiOBHm_Chr4g0442951
rosa_laevigata	RLG00000005970 RLG00000010014
rosa_multiflora	Rmu_sc0000121.1_g000021 Rmu_sc0000124.1_g000039 Rmu_sc0000279.1_g000039 Rmu_sc0000384.1_g000020 Rmu_sc0001917.1_g000005 Rmu_sc0002607.1_g000043 Rmu_sc0007295.1_g000002 Rmu_sc0042689.1_g000001
rosa_roxburghii	Rroxscaffold_6G00423260 Rroxscaffold_6G00423720
rosa_rugosa	Rorug03G0012000 Rorug03G0012100 Rorug04G0109700 Rorug04G0343700
rosa_samantha	Rh1CG037400 Rh2BG184700 Rh2BG311600 Rh3AG072300 Rh3AG085600 Rh3BG074200 Rh3BG088300 Rh3CG073700 Rh3DG075500 Rh3DG089200 Rh4AG396600 Rh4AG396900 Rh4AG397000 Rh4AG397400 Rh4AG397800 Rh4BG409300 Rh4CG424800 Rh4DG403200 Rh4DG403500 Rh4DG403600 Rh4DG404100 Rh5BG556500 Rh6BG383200
rosa_wichuraiana	Rw2G024280 Rw3G005860 Rw3G006140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	62
AcuI	CTGAAG	1 cut(s)	222
AflIII	ACRYGT	1 cut(s)	214
AgsI	TTSAA	1 cut(s)	8
AjiI	CACGTC	1 cut(s)	64
AluBI	AGCT	2 cut(s)	248, 266
AluI	AGCT	2 cut(s)	248, 266
ApeKI	GCWGC	1 cut(s)	245
BbvI	GCAGC	1 cut(s)	257
BccI	CCATC	1 cut(s)	253
BisI	GCNGC	1 cut(s)	246
BlsI	GCNGC	1 cut(s)	247
BmgBI	CACGTC	1 cut(s)	64
BmsI	GCATC	3 cut(s)	195, 232, 292
Bpu10I	CCTNAGC	1 cut(s)	306
BseRI	GAGGAG	1 cut(s)	184
BseXI	GCAGC	1 cut(s)	257
BslFI	GGGAC	1 cut(s)	254
BsmFI	GGGAC	1 cut(s)	254
Bsp143I	GATC	1 cut(s)	224
BspHI	TCATGA	1 cut(s)	298
BssMI	GATC	1 cut(s)	224
Bst4CI	ACNGT	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	321
BstDEI	CTNAG	1 cut(s)	306
BstKTI	GATC	1 cut(s)	227
BstMBI	GATC	1 cut(s)	224
BstNSI	RCATGY	2 cut(s)	218, 323
BstV1I	GCAGC	1 cut(s)	257
BtgZI	GCGATG	1 cut(s)	348
BtrI	CACGTC	1 cut(s)	64
Cac8I	GCNNGC	1 cut(s)	321
CciI	TCATGA	1 cut(s)	298
CviAII	CATG	4 cut(s)	136, 215, 299, 320
CviJI	RGCY	3 cut(s)	151, 248, 266
CviKI_1	RGCY	3 cut(s)	151, 248, 266
DdeI	CTNAG	1 cut(s)	306
DpnI	GATC	1 cut(s)	226
DpnII	GATC	1 cut(s)	224
DrdI	GACNNNNNNGTC	1 cut(s)	62
DseDI	GACNNNNNNGTC	1 cut(s)	62
Eco57I	CTGAAG	1 cut(s)	222
FaeI	CATG	4 cut(s)	139, 218, 302, 323
FaiI	YATR	6 cut(s)	32, 137, 216, 300, 321, 331
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	4 cut(s)	135, 214, 298, 319
Fnu4HI	GCNGC	1 cut(s)	246
Fsp4HI	GCNGC	1 cut(s)	246
GluI	GCNGC	1 cut(s)	246
Hin1II	CATG	4 cut(s)	139, 218, 302, 323
HinfI	GANTC	3 cut(s)	172, 251, 350
Hpy188I	TCNGA	3 cut(s)	78, 241, 336
Hpy188III	TCNNGA	3 cut(s)	53, 202, 299
HpyAV	CCTTC	1 cut(s)	246
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	6 cut(s)	127, 179, 208, 245, 292, 359
HpyF3I	CTNAG	1 cut(s)	306
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	4 cut(s)	139, 218, 302, 323
Kzo9I	GATC	1 cut(s)	224
LmnI	GCTCC	1 cut(s)	316
LpnPI	CCDG	4 cut(s)	2, 66, 147, 215
Lsp1109I	GCAGC	1 cut(s)	257
LweI	GCATC	3 cut(s)	195, 232, 292
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	2 cut(s)	59, 157
MalI	GATC	1 cut(s)	226
MboI	GATC	1 cut(s)	224
MluCI	AATT	3 cut(s)	45, 190, 342
MlyI	GAGTC	2 cut(s)	181, 245
MnlI	CCTC	7 cut(s)	35, 77, 91, 140, 158, 162, 195
MseI	TTAA	1 cut(s)	219
MspA1I	CMGCKG	1 cut(s)	248
NdeII	GATC	1 cut(s)	224
NlaIII	CATG	4 cut(s)	139, 218, 302, 323
NmuCI	GTSAC	2 cut(s)	59, 157
NspI	RCATGY	2 cut(s)	218, 323
PaeI	GCATGC	1 cut(s)	323
PagI	TCATGA	1 cut(s)	298
PciI	ACATGT	1 cut(s)	214
PfeI	GAWTC	1 cut(s)	350
PkrI	GCNGC	1 cut(s)	247
PleI	GAGTC	2 cut(s)	180, 245
PpsI	GAGTC	2 cut(s)	180, 245
PscI	ACATGT	1 cut(s)	214
PvuII	CAGCTG	1 cut(s)	248
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	1 cut(s)	246
Sau3AI	GATC	1 cut(s)	224
SchI	GAGTC	2 cut(s)	181, 245
SetI	ASST	7 cut(s)	21, 66, 124, 187, 250, 268, 312
SfaNI	GCATC	3 cut(s)	195, 232, 292
SphI	GCATGC	1 cut(s)	323
Sse9I	AATT	3 cut(s)	45, 190, 342
TaaI	ACNGT	1 cut(s)	59
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	1 cut(s)	24
TasI	AATT	3 cut(s)	45, 190, 342
TfiI	GAWTC	1 cut(s)	350
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TseFI	GTSAC	2 cut(s)	59, 157
TseI	GCWGC	1 cut(s)	245
Tsp45I	GTSAC	2 cut(s)	59, 157
XceI	RCATGY	2 cut(s)	218, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.