Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001057

Physical Location & Seq

Genomic Coordinates Forward (+)

14991880 .. 14993781

Gene Structure 1902 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G37740.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGAGAATCTTGTAGGTCTTCTTCGAATTCATGTGAAAAGAGGTGTGAATCTCGCCATTAGAGACATCTCAAGCAGTGATCCTTACATCGTCGTTCACTGCGGTAAACAGAAGTTGAAAACACGCGTGGTGAAACATAGTGTAAACCCCGAGTGGAACGACGACTTGACACTTTCCGTGACTGATCCGAATCTCCCGATTAAACTTACGGTTTATGACTATGACTTGCTCTCCGCGGATGACAAGATGGGAGAAGCCGAGTTCCACATTGGTCCATTTATTGAAGCTATTAAATTTGCCCATCAGCTCGGACCAGGACTTCCTAATGGGACCATAATAAAGAAGATAGAGCCGAGCAGAAAAAATTGTTTGTCTGAATCAAGCCACATTGTGTTGAACCAAGGCAAGATTGTCCAGAATATGTTCCTTAGACTCCAGCACGTGGAGTGTGGAGAGGTTGAGCTACAGCTCGAGTGGATCGATGTCCCGGGTTCAAGGGGTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0008047 GO:0008150 GO:0008289 GO:0009611 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0023051 GO:0023056 GO:0030234 GO:0030695 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0043900 GO:0043902 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0080134 GO:0098772 GO:1900424 GO:1900426 GO:1901000 GO:1901002 GO:1901419 GO:1901421 GO:1902477 GO:1902479 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

168

Amino Acids

18.84

Weight (kDa)

6.37

Isoelectric Point (pI)

39.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	6 - 102	1.3e-19	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70810 AT5G37740 AT5G37740
fragaria_vesca	FvH4_1g27320 FvH4_1g28670 FvH4_1g28680 FvH4_1g28690 FvH4_2g18820
malus_domestica	MD09G1278700.v1.1 MD09G1278800.v1.1 MD09G1278900.v1.1 MD09G1279000.v1.1 MD17G1260900.v1.1
prunus_persica	Prupe.3G162700_v2.0.a1 Prupe.3G162800_v2.0.a1 Prupe.3G162900_v2.0.a1 Prupe.3G162900_v2.0.a1
pyrus_communis	pycom09g17860 pycom09g17870 pycom09g17880 pycom09g17890 pycom17g26160
rosa_chinensis	RchiOBHm_Chr3g0492961 RchiOBHm_Chr3g0492971 RchiOBHm_Chr3g0492991
rosa_laevigata	RLG00000022734 RLG00000022736 RLG00000022737 RLG00000022739 RLG00000022740 RLG00000022741
rosa_multiflora	Rmu_co8406109.1_g000001 Rmu_sc0000395.1_g000015 Rmu_sc0000395.1_g000023 Rmu_sc0000395.1_g000029 Rmu_sc0008956.1_g000004 Rmu_sc0016690.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391990 Rroxscaffold_6G00392000 Rroxscaffold_6G00392010
rosa_rugosa	Rorug03G0256700 Rorug03G0257800 Rorug03G0258000 Rorug03G0258400 Rorug03G0258500 Rorug03G0258500
rosa_samantha	Rh3AG306200 Rh3AG307300 Rh3AG307500 Rh3BG342700 Rh3BG342800 Rh3BG342900 Rh3CG340000 Rh3CG340200 Rh3DG342000 Rh3DG342200 Rh3DG342400
rosa_wichuraiana	Rw3G027020 Rw3G027030 Rw3G027040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	442
AccII	CGCG	2 cut(s)	126, 236
AciI	CCGC	3 cut(s)	102, 234, 236
AclWI	GGATC	3 cut(s)	74, 179, 485
AcsI	RAATTY	2 cut(s)	27, 293
AcvI	CACGTG	1 cut(s)	442
AdeI	CACNNNGTG	1 cut(s)	391
AfiI	CCNNNNNNNGG	1 cut(s)	442
AflIII	ACRYGT	1 cut(s)	124
AgsI	TTSAA	4 cut(s)	118, 284, 397, 495
AjnI	CCWGG	1 cut(s)	313
AluBI	AGCT	4 cut(s)	287, 307, 463, 469
AluI	AGCT	4 cut(s)	287, 307, 463, 469
Alw26I	GTCTC	1 cut(s)	57
AlwI	GGATC	3 cut(s)	74, 179, 485
Ama87I	CYCGRG	3 cut(s)	149, 470, 487
ApoI	RAATTY	2 cut(s)	27, 293
Asp700I	GAANNNNTTC	1 cut(s)	422
AspS9I	GGNCC	3 cut(s)	272, 311, 330
AsuC2I	CCSGG	2 cut(s)	488, 489
AsuHPI	GGTGA	1 cut(s)	142
AsuII	TTCGAA	1 cut(s)	25
AvaI	CYCGRG	3 cut(s)	149, 470, 487
AvaII	GGWCC	3 cut(s)	272, 311, 330
BarI	GAAGNNNNNNTAC	1 cut(s)	38
BbrPI	CACGTG	1 cut(s)	442
BbsI	GAAGAC	1 cut(s)	11
BccI	CCATC	2 cut(s)	241, 309
BciT130I	CCWGG	1 cut(s)	315
BcnI	CCSGG	2 cut(s)	488, 489
BcoDI	GTCTC	1 cut(s)	57
BfmI	CTRYAG	1 cut(s)	464
Bme1390I	CCNGG	3 cut(s)	315, 488, 489
Bme18I	GGWCC	3 cut(s)	272, 311, 330
BmeT110I	CYCGRG	3 cut(s)	149, 470, 487
BmgT120I	GGNCC	3 cut(s)	272, 311, 330
BmiI	GGNNCC	1 cut(s)	331
BmrFI	CCNGG	3 cut(s)	315, 488, 489
BpiI	GAAGAC	1 cut(s)	11
BpmI	CTGGAG	1 cut(s)	419
Bpu14I	TTCGAA	1 cut(s)	25
BpuEI	CTTGAG	1 cut(s)	55
BpuMI	CCSGG	2 cut(s)	488, 489
Bsa29I	ATCGAT	1 cut(s)	480
BsaAI	YACGTR	1 cut(s)	442
BsaBI	GATNNNNATC	1 cut(s)	189
BsaJI	CCNNGG	3 cut(s)	234, 400, 487
BsaXI	ACNNNNNCTCC	2 cut(s)	215, 245
Bsc4I	CCNNNNNNNGG	1 cut(s)	442
Bse8I	GATNNNNATC	1 cut(s)	189
BseBI	CCWGG	1 cut(s)	315
BseCI	ATCGAT	1 cut(s)	480
BseDI	CCNNGG	3 cut(s)	234, 400, 487
BseGI	GGATG	1 cut(s)	244
BseJI	GATNNNNATC	1 cut(s)	189
BseLI	CCNNNNNNNGG	1 cut(s)	442
Bsh1236I	CGCG	2 cut(s)	126, 236
BshVI	ATCGAT	1 cut(s)	480
BsiHKCI	CYCGRG	3 cut(s)	149, 470, 487
BsiSI	CCGG	1 cut(s)	488
BslFI	GGGAC	2 cut(s)	343, 470
BslI	CCNNNNNNNGG	1 cut(s)	442
BsmAI	GTCTC	1 cut(s)	57
BsmFI	GGGAC	2 cut(s)	343, 470
BsoBI	CYCGRG	3 cut(s)	149, 470, 487
Bsp119I	TTCGAA	1 cut(s)	25
Bsp143I	GATC	3 cut(s)	79, 184, 477
BspACI	CCGC	3 cut(s)	102, 234, 236
BspDI	ATCGAT	1 cut(s)	480
BspFNI	CGCG	2 cut(s)	126, 236
BspLI	GGNNCC	1 cut(s)	331
BspPI	GGATC	3 cut(s)	74, 179, 485
BspT104I	TTCGAA	1 cut(s)	25
BssECI	CCNNGG	3 cut(s)	234, 400, 487
BssMI	GATC	3 cut(s)	79, 184, 477
BssT1I	CCWWGG	1 cut(s)	400
Bst2UI	CCWGG	1 cut(s)	315
Bst4CI	ACNGT	1 cut(s)	211
BstBAI	YACGTR	1 cut(s)	442
BstBI	TTCGAA	1 cut(s)	25
BstDEI	CTNAG	1 cut(s)	428
BstDSI	CCRYGG	1 cut(s)	234
BstF5I	GGATG	1 cut(s)	244
BstFNI	CGCG	2 cut(s)	126, 236
BstKTI	GATC	3 cut(s)	82, 187, 480
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	3 cut(s)	79, 184, 477
BstNI	CCWGG	1 cut(s)	315
BstSCI	CCNGG	3 cut(s)	313, 486, 487
BstSFI	CTRYAG	1 cut(s)	464
BstUI	CGCG	2 cut(s)	126, 236
BstV2I	GAAGAC	1 cut(s)	11
Bsu15I	ATCGAT	1 cut(s)	480
BsuTUI	ATCGAT	1 cut(s)	480
BtgI	CCRYGG	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	244
BtsI	GCAGTG	2 cut(s)	82, 97
BtsIMutI	CAGTG	2 cut(s)	82, 97
Cfr13I	GGNCC	3 cut(s)	272, 311, 330
Cfr42I	CCGCGG	1 cut(s)	237
Cfr9I	CCCGGG	1 cut(s)	487
ClaI	ATCGAT	1 cut(s)	480
CviAII	CATG	1 cut(s)	32
CviJI	RGCY	7 cut(s)	257, 287, 307, 352, 384, 463, 469
CviKI_1	RGCY	7 cut(s)	257, 287, 307, 352, 384, 463, 469
DdeI	CTNAG	1 cut(s)	428
DpnI	GATC	3 cut(s)	81, 186, 479
DpnII	GATC	3 cut(s)	79, 184, 477
DraIII	CACNNNGTG	1 cut(s)	391
Eco130I	CCWWGG	1 cut(s)	400
Eco47I	GGWCC	3 cut(s)	272, 311, 330
Eco72I	CACGTG	1 cut(s)	442
Eco88I	CYCGRG	3 cut(s)	149, 470, 487
EcoRI	GAATTC	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	400
ErhI	CCWWGG	1 cut(s)	400
FaeI	CATG	1 cut(s)	35
FaiI	YATR	6 cut(s)	33, 138, 216, 222, 335, 422
FaqI	GGGAC	2 cut(s)	343, 470
FatI	CATG	1 cut(s)	31
FokI	GGATG	1 cut(s)	251
GsuI	CTGGAG	1 cut(s)	419
HapII	CCGG	1 cut(s)	488
Hin1II	CATG	1 cut(s)	35
HinfI	GANTC	5 cut(s)	7, 49, 190, 377, 432
HpaII	CCGG	1 cut(s)	488
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	3 cut(s)	97, 107, 145
Hpy188I	TCNGA	3 cut(s)	189, 311, 376
Hpy188III	TCNNGA	2 cut(s)	196, 415
Hpy8I	GTNNAC	3 cut(s)	97, 107, 145
Hpy99I	CGWCG	2 cut(s)	95, 164
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4IV	ACGT	1 cut(s)	441
HpyF3I	CTNAG	1 cut(s)	428
HpySE526I	ACGT	1 cut(s)	441
Hsp92II	CATG	1 cut(s)	35
KspI	CCGCGG	1 cut(s)	237
Kzo9I	GATC	3 cut(s)	79, 184, 477
LpnPI	CCDG	5 cut(s)	300, 327, 428, 449, 501
MaeII	ACGT	1 cut(s)	441
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	3 cut(s)	81, 186, 479
MboI	GATC	3 cut(s)	79, 184, 477
MboII	GAAGA	3 cut(s)	11, 14, 355
MluCI	AATT	3 cut(s)	27, 293, 364
MluI	ACGCGT	1 cut(s)	124
MlyI	GAGTC	1 cut(s)	426
MnlI	CCTC	2 cut(s)	35, 448
MroXI	GAANNNNTTC	1 cut(s)	422
MseI	TTAA	2 cut(s)	201, 291
MspA1I	CMGCKG	1 cut(s)	236
MspI	CCGG	1 cut(s)	488
MspR9I	CCNGG	3 cut(s)	315, 488, 489
MvaI	CCWGG	1 cut(s)	315
MvnI	CGCG	2 cut(s)	126, 236
NciI	CCSGG	2 cut(s)	488, 489
NdeII	GATC	3 cut(s)	79, 184, 477
NlaIII	CATG	1 cut(s)	35
NlaIV	GGNNCC	1 cut(s)	331
NmeAIII	GCCGAG	2 cut(s)	283, 378
NmuCI	GTSAC	1 cut(s)	178
NspV	TTCGAA	1 cut(s)	25
PaeR7I	CTCGAG	1 cut(s)	470
PcsI	WCGNNNNNNNCGW	1 cut(s)	477
PdmI	GAANNNNTTC	1 cut(s)	422
PfeI	GAWTC	4 cut(s)	7, 49, 190, 377
PflMI	CCANNNNNTGG	1 cut(s)	442
PleI	GAGTC	1 cut(s)	426
PmaCI	CACGTG	1 cut(s)	442
PmlI	CACGTG	1 cut(s)	442
PpsI	GAGTC	1 cut(s)	426
Ppu21I	YACGTR	1 cut(s)	442
Psp6I	CCWGG	1 cut(s)	313
PspCI	CACGTG	1 cut(s)	442
PspGI	CCWGG	1 cut(s)	313
PspN4I	GGNNCC	1 cut(s)	331
PspPI	GGNCC	3 cut(s)	272, 311, 330
PspXI	VCTCGAGB	1 cut(s)	470
SacII	CCGCGG	1 cut(s)	237
SaqAI	TTAA	2 cut(s)	201, 291
Sau3AI	GATC	3 cut(s)	79, 184, 477
Sau96I	GGNCC	3 cut(s)	272, 311, 330
SchI	GAGTC	1 cut(s)	426
ScrFI	CCNGG	3 cut(s)	315, 488, 489
SetI	ASST	8 cut(s)	19, 46, 289, 309, 444, 459, 465, 471
SfcI	CTRYAG	1 cut(s)	464
Sfr274I	CTCGAG	1 cut(s)	470
Sfr303I	CCGCGG	1 cut(s)	237
SfuI	TTCGAA	1 cut(s)	25
SgrBI	CCGCGG	1 cut(s)	237
SinI	GGWCC	3 cut(s)	272, 311, 330
SlaI	CTCGAG	1 cut(s)	470
SmaI	CCCGGG	1 cut(s)	489
SmlI	CTYRAG	2 cut(s)	70, 470
SmoI	CTYRAG	2 cut(s)	70, 470
Sse9I	AATT	3 cut(s)	27, 293, 364
SsiI	CCGC	3 cut(s)	102, 234, 236
StyD4I	CCNGG	3 cut(s)	313, 486, 487
StyI	CCWWGG	1 cut(s)	400
TaaI	ACNGT	1 cut(s)	211
TaiI	ACGT	1 cut(s)	444
TaqI	TCGA	3 cut(s)	25, 471, 480
TasI	AATT	3 cut(s)	27, 293, 364
TfiI	GAWTC	4 cut(s)	7, 49, 190, 377
Tru1I	TTAA	2 cut(s)	201, 291
Tru9I	TTAA	2 cut(s)	201, 291
TscAI	CASTG	2 cut(s)	82, 104
TseFI	GTSAC	1 cut(s)	178
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	1 cut(s)	20
TspGWI	ACGGA	1 cut(s)	166
TspMI	CCCGGG	1 cut(s)	487
TspRI	CASTG	2 cut(s)	82, 104
Van91I	CCANNNNNTGG	1 cut(s)	442
VpaK11BI	GGWCC	3 cut(s)	272, 311, 330
XapI	RAATTY	2 cut(s)	27, 293
XhoI	CTCGAG	1 cut(s)	470
XmaI	CCCGGG	1 cut(s)	487
XmnI	GAANNNNTTC	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.