Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0001057

Physical Location & Seq

Genomic Coordinates Forward (+)

18396067 .. 18396837

Gene Structure 771 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g17870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGAGAACATGATGGGTCTGCTTAGTGTTCACGTCCAGAGAGGAGTGAACCTTGCTGTTAGAGACATGAGAAGCAGTGATCCTTACGTCGTTGTCAAAATGGGCAAGCAGAAACTGAAAACTGCTGTGGTGAAGAGGAATGTGAATCCAGTATGGGATGAAACGTTGACACTTTCCGTCACAGAACCAAATCTTCCCATCACGCTGTGTGTGTATGATAAAGACAGATTTAGTTTTGATGACAAAATGGGGGACGCAGAGTTTGAGATTGCACTATTTATCAAAGTCTTGAGGATGCGATTGGAAGGCCTACTAGATGGAACCGTAATTGCAAAAGTACAACCAAATAGGGAAAACTGCCTTGCTGAAGAGAGCTGCATCATCTGGTCTAAAGGCAAACTTGTCCAGAACATGGCCCTCAGGCTCAGAAATGTGGAGTGTGGGGAGGTTGAACTCCAACTGCAGTGGATTGATGTTCCTAGTTCTAGGGGTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0008047 GO:0008150 GO:0008289 GO:0009611 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0023051 GO:0023056 GO:0030234 GO:0030695 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0043900 GO:0043902 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0080134 GO:0098772 GO:1900424 GO:1900426 GO:1901000 GO:1901002 GO:1901419 GO:1901421 GO:1902477 GO:1902479 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

166

Amino Acids

18.74

Weight (kDa)

6.6

Isoelectric Point (pI)

42.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	6 - 91	3e-23	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70810 AT5G37740 AT5G37740
fragaria_vesca	FvH4_1g27320 FvH4_1g28670 FvH4_1g28680 FvH4_1g28690 FvH4_2g18820
malus_domestica	MD09G1278700.v1.1 MD09G1278800.v1.1 MD09G1278900.v1.1 MD09G1279000.v1.1 MD17G1260900.v1.1
prunus_persica	Prupe.3G162700_v2.0.a1 Prupe.3G162800_v2.0.a1 Prupe.3G162900_v2.0.a1 Prupe.3G162900_v2.0.a1
pyrus_communis	pycom09g17860 pycom09g17870 pycom09g17880 pycom09g17890 pycom17g26160
rosa_chinensis	RchiOBHm_Chr3g0492961 RchiOBHm_Chr3g0492971 RchiOBHm_Chr3g0492991
rosa_laevigata	RLG00000022734 RLG00000022736 RLG00000022737 RLG00000022739 RLG00000022740 RLG00000022741
rosa_multiflora	Rmu_co8406109.1_g000001 Rmu_sc0000395.1_g000015 Rmu_sc0000395.1_g000023 Rmu_sc0000395.1_g000029 Rmu_sc0008956.1_g000004 Rmu_sc0016690.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391990 Rroxscaffold_6G00392000 Rroxscaffold_6G00392010
rosa_rugosa	Rorug03G0256700 Rorug03G0257800 Rorug03G0258000 Rorug03G0258400 Rorug03G0258500 Rorug03G0258500
rosa_samantha	Rh3AG306200 Rh3AG307300 Rh3AG307500 Rh3BG342700 Rh3BG342800 Rh3BG342900 Rh3CG340000 Rh3CG340200 Rh3DG342000 Rh3DG342200 Rh3DG342400
rosa_wichuraiana	Rw3G027020 Rw3G027030 Rw3G027040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	412
AclI	AACGTT	1 cut(s)	164
AclWI	GGATC	1 cut(s)	74
AcuI	CTGAAG	1 cut(s)	387
AdeI	CACNNNGTG	1 cut(s)	207
AfaI	GTAC	1 cut(s)	339
AfiI	CCNNNNNNNGG	1 cut(s)	412
AgsI	TTSAA	1 cut(s)	452
AjiI	CACGTC	1 cut(s)	34
AluBI	AGCT	1 cut(s)	375
AluI	AGCT	1 cut(s)	375
Alw26I	GTCTC	1 cut(s)	57
AlwI	GGATC	1 cut(s)	74
AlwNI	CAGNNNCTG	1 cut(s)	115
AoxI	GGCC	2 cut(s)	307, 414
ApeKI	GCWGC	1 cut(s)	375
ArsI	GACNNNNNNTTYG	2 cut(s)	245, 277
AspS9I	GGNCC	1 cut(s)	415
AsuHPI	GGTGA	1 cut(s)	142
AxyI	CCTNAGG	1 cut(s)	419
BbvI	GCAGC	1 cut(s)	362
BccI	CCATC	3 cut(s)	7, 206, 311
BcoDI	GTCTC	1 cut(s)	57
BfaI	CTAG	3 cut(s)	314, 480, 486
BfmI	CTRYAG	2 cut(s)	461, 494
BisI	GCNGC	1 cut(s)	376
BlsI	GCNGC	1 cut(s)	377
BmgBI	CACGTC	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	415
BmiI	GGNNCC	1 cut(s)	322
BmsI	GCATC	2 cut(s)	285, 387
BpuEI	CTTGAG	1 cut(s)	310
Bsc4I	CCNNNNNNNGG	1 cut(s)	412
Bse1I	ACTGG	1 cut(s)	149
Bse21I	CCTNAGG	1 cut(s)	419
BseGI	GGATG	2 cut(s)	163, 300
BseLI	CCNNNNNNNGG	1 cut(s)	412
BseMII	CTCAG	2 cut(s)	433, 439
BseNI	ACTGG	1 cut(s)	149
BseRI	GAGGAG	1 cut(s)	57
BseXI	GCAGC	1 cut(s)	362
BshFI	GGCC	2 cut(s)	309, 416
BslFI	GGGAC	1 cut(s)	266
BslI	CCNNNNNNNGG	1 cut(s)	412
BsmAI	GTCTC	1 cut(s)	57
BsmFI	GGGAC	1 cut(s)	266
BsnI	GGCC	2 cut(s)	309, 416
Bsp143I	GATC	1 cut(s)	79
BspANI	GGCC	2 cut(s)	309, 416
BspCNI	CTCAG	2 cut(s)	432, 438
BspLI	GGNNCC	1 cut(s)	322
BspMAI	CTGCAG	1 cut(s)	465
BspPI	GGATC	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	149
BssMI	GATC	1 cut(s)	79
Bst4CI	ACNGT	1 cut(s)	325
Bst6I	CTCTTC	2 cut(s)	128, 363
BstC8I	GCNNGC	1 cut(s)	107
BstDEI	CTNAG	3 cut(s)	23, 419, 425
BstF5I	GGATG	2 cut(s)	163, 300
BstKTI	GATC	1 cut(s)	82
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	1 cut(s)	79
BstSFI	CTRYAG	2 cut(s)	461, 494
BstV1I	GCAGC	1 cut(s)	362
Bsu36I	CCTNAGG	1 cut(s)	419
BsuRI	GGCC	2 cut(s)	309, 416
BtrI	CACGTC	1 cut(s)	34
BtsCI	GGATG	2 cut(s)	163, 300
BtsI	GCAGTG	2 cut(s)	82, 470
BtsIMutI	CAGTG	2 cut(s)	82, 470
Cac8I	GCNNGC	1 cut(s)	107
CaiI	CAGNNNCTG	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	415
CseI	GACGC	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	338
CspCI	CAANNNNNGTGG	2 cut(s)	446, 481
CviAII	CATG	3 cut(s)	10, 67, 412
CviJI	RGCY	4 cut(s)	309, 375, 416, 424
CviKI_1	RGCY	4 cut(s)	309, 375, 416, 424
CviQI	GTAC	1 cut(s)	338
DdeI	CTNAG	3 cut(s)	23, 419, 425
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
DraIII	CACNNNGTG	1 cut(s)	207
Eam1104I	CTCTTC	2 cut(s)	128, 363
EarI	CTCTTC	2 cut(s)	128, 363
Eco147I	AGGCCT	1 cut(s)	309
Eco57I	CTGAAG	1 cut(s)	387
Eco81I	CCTNAGG	1 cut(s)	419
FaeI	CATG	3 cut(s)	13, 70, 415
FaiI	YATR	5 cut(s)	11, 68, 154, 216, 413
FalI	AAGNNNNNCTT	2 cut(s)	384, 416
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	3 cut(s)	9, 66, 411
Fnu4HI	GCNGC	1 cut(s)	376
FokI	GGATG	2 cut(s)	170, 307
Fsp4HI	GCNGC	1 cut(s)	376
FspBI	CTAG	3 cut(s)	314, 480, 486
GluI	GCNGC	1 cut(s)	376
HaeIII	GGCC	2 cut(s)	309, 416
HgaI	GACGC	1 cut(s)	263
Hin1II	CATG	3 cut(s)	13, 70, 415
HincII	GTYRAC	1 cut(s)	168
HindII	GTYRAC	1 cut(s)	168
HinfI	GANTC	1 cut(s)	145
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	3 cut(s)	31, 49, 168
Hpy188I	TCNGA	1 cut(s)	428
Hpy188III	TCNNGA	3 cut(s)	37, 289, 406
Hpy8I	GTNNAC	3 cut(s)	31, 49, 168
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	1 cut(s)	299
HpyCH4III	ACNGT	1 cut(s)	325
HpyCH4IV	ACGT	3 cut(s)	33, 87, 164
HpyCH4V	TGCA	4 cut(s)	272, 332, 378, 463
HpyF3I	CTNAG	3 cut(s)	23, 419, 425
HpySE526I	ACGT	3 cut(s)	33, 87, 164
Hsp92II	CATG	3 cut(s)	13, 70, 415
Kzo9I	GATC	1 cut(s)	79
LpnPI	CCDG	5 cut(s)	50, 162, 370, 406, 419
Lsp1109I	GCAGC	1 cut(s)	362
LweI	GCATC	2 cut(s)	285, 387
MaeI	CTAG	3 cut(s)	314, 480, 486
MaeII	ACGT	3 cut(s)	33, 87, 164
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	1 cut(s)	81
MboI	GATC	1 cut(s)	79
MboII	GAAGA	3 cut(s)	145, 185, 380
MluCI	AATT	1 cut(s)	327
MmeI	TCCRAC	1 cut(s)	481
MnlI	CCTC	5 cut(s)	35, 129, 285, 428, 439
NdeII	GATC	1 cut(s)	79
NlaIII	CATG	3 cut(s)	13, 70, 415
NlaIV	GGNNCC	1 cut(s)	322
NmuCI	GTSAC	1 cut(s)	178
PceI	AGGCCT	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	145
PflMI	CCANNNNNTGG	1 cut(s)	412
PkrI	GCNGC	1 cut(s)	377
Psp1406I	AACGTT	1 cut(s)	164
PspN4I	GGNNCC	1 cut(s)	322
PspPI	GGNCC	1 cut(s)	415
PstI	CTGCAG	1 cut(s)	465
PstNI	CAGNNNCTG	1 cut(s)	115
RsaI	GTAC	1 cut(s)	339
RsaNI	GTAC	1 cut(s)	338
SatI	GCNGC	1 cut(s)	376
Sau3AI	GATC	1 cut(s)	79
Sau96I	GGNCC	1 cut(s)	415
SetI	ASST	6 cut(s)	36, 54, 90, 167, 377, 450
SfaNI	GCATC	2 cut(s)	285, 387
SfcI	CTRYAG	2 cut(s)	461, 494
SmlI	CTYRAG	1 cut(s)	289
SmoI	CTYRAG	1 cut(s)	289
Sse9I	AATT	1 cut(s)	327
SseBI	AGGCCT	1 cut(s)	309
SspMI	CTAG	3 cut(s)	314, 480, 486
StuI	AGGCCT	1 cut(s)	309
TaaI	ACNGT	1 cut(s)	325
TaiI	ACGT	3 cut(s)	36, 90, 167
TasI	AATT	1 cut(s)	327
TatI	WGTACW	1 cut(s)	337
TfiI	GAWTC	1 cut(s)	145
TscAI	CASTG	2 cut(s)	82, 470
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	1 cut(s)	375
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	1 cut(s)	174
TspGWI	ACGGA	1 cut(s)	166
TspRI	CASTG	2 cut(s)	82, 470
Van91I	CCANNNNNTGG	1 cut(s)	412
XspI	CTAG	3 cut(s)	314, 480, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.