RLG00000022736

GTPase activator activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0001057
Physical Location & Seq
Forward (+)
11005499 .. 11006867
1369 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022736

Sequence Viewer

Length: 498 bp
ATGGAGCATCTGATGGGCCTCCTTAGAATCCGTGTGCAGAGAGGAACAAACCTTGCTGTTAGAGATGTCAGAAGCAGTGATCCTTACGCTGTCATCAAAATGGGCAAGCAGAAATTGAAGACTCGTGTGGTGAAGAAGAGCGTCAATCCCGAGTGGAACGAAGATTTAACTCTTTCAATTGCTGATTCAAGTCTTCCTGTCCATATTGCTGTGTATGACAAAGACACATTTAGTCTTGATGACAAGATGGGGGATGCTGAATTCGAAATTGGTCCATTTCTTGAAGCAATACGGATGCGCTTGGATGGCGTGGCAAATGGAACCGTAGCTTCAAGAGTACAACCAAGCAGGGAAAACTGCCTTGCTAAAGAAAGCTCCATCATCTATAGTGATGGCCATATTATCCAGAACATGACTGTCAAACTCAGAAATGTGGAGAGTGGGGAAGTGGAACTCCAGTTACAATGGATTGATATTCCCGGCTCTCGGGGTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002376 GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004812 GO:0004818 GO:0004827 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006417 GO:0006418 GO:0006424 GO:0006433 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0008047 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009059 GO:0009611 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010243 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0010876 GO:0015711 GO:0015718 GO:0015849 GO:0015908 GO:0015909 GO:0016020 GO:0016043 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0017148 GO:0019222 GO:0019538 GO:0019752 GO:0019899 GO:0022607 GO:0030234 GO:0030695 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0032268 GO:0032269 GO:0032868 GO:0032869 GO:0032870 GO:0032991 GO:0033036 GO:0034097 GO:0034248 GO:0034249 GO:0034341 GO:0034641 GO:0034645 GO:0034660 GO:0035613 GO:0042221 GO:0042802 GO:0042803 GO:0043038 GO:0043039 GO:0043043 GO:0043085 GO:0043087 GO:0043167 GO:0043169 GO:0043170 GO:0043434 GO:0043436 GO:0043547 GO:0043603 GO:0043604 GO:0043900 GO:0043902 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044539 GO:0045087 GO:0045088 GO:0045089 GO:0046483 GO:0046872 GO:0046914 GO:0046942 GO:0046983 GO:0047484 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051020 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051246 GO:0051248 GO:0051336 GO:0051345 GO:0051716 GO:0060255 GO:0060589 GO:0065003 GO:0065007 GO:0065009 GO:0070887 GO:0071310 GO:0071345 GO:0071346 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0097452 GO:0098772 GO:0140098 GO:0140101 GO:1900424 GO:1900426 GO:1901000 GO:1901002 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902477 GO:1902479 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
ko00220 ko00250 ko00260 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00220 map00250 map00260 map00630 map00710 map01100 map01110 map01120 map01130 map01200 map01210 map01230
Pfam Domains
Protein Families
C2

Protein Analysis

166

Amino Acids

18.48

Weight (kDa)

6.31

Isoelectric Point (pI)

42.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 6 - 92 6.7e-23 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 74
AcoI YGGCCR 1 cut(s) 394
AcsI RAATTY 1 cut(s) 260
AfaI GTAC 1 cut(s) 339
AfiI CCNNNNNNNGG 1 cut(s) 486
AgsI TTSAA 5 cut(s) 118, 177, 189, 284, 333
AjuI GAANNNNNNNTTGG 2 cut(s) 252, 284
AluBI AGCT 2 cut(s) 329, 375
AluI AGCT 2 cut(s) 329, 375
AlwI GGATC 1 cut(s) 74
Ama87I CYCGRG 2 cut(s) 149, 486
AoxI GGCC 2 cut(s) 16, 394
ApoI RAATTY 1 cut(s) 260
AspLEI GCGC 1 cut(s) 300
AspS9I GGNCC 2 cut(s) 16, 272
AsuC2I CCSGG 1 cut(s) 480
AsuHPI GGTGA 1 cut(s) 142
AsuII TTCGAA 1 cut(s) 264
AvaI CYCGRG 2 cut(s) 149, 486
AvaII GGWCC 1 cut(s) 272
BalI TGGCCA 1 cut(s) 396
BauI CACGAG 1 cut(s) 123
BbsI GAAGAC 2 cut(s) 125, 185
BccI CCATC 5 cut(s) 7, 241, 299, 386, 386
BcnI CCSGG 1 cut(s) 480
BfmI CTRYAG 1 cut(s) 385
Bme1390I CCNGG 1 cut(s) 480
Bme18I GGWCC 1 cut(s) 272
BmeT110I CYCGRG 2 cut(s) 149, 486
BmgT120I GGNCC 2 cut(s) 16, 272
BmiI GGNNCC 1 cut(s) 322
BmrFI CCNGG 1 cut(s) 480
BmsI GCATC 3 cut(s) 16, 244, 285
BpiI GAAGAC 2 cut(s) 125, 185
BpmI CTGGAG 1 cut(s) 440
Bpu14I TTCGAA 1 cut(s) 264
BpuMI CCSGG 1 cut(s) 480
Bsc4I CCNNNNNNNGG 1 cut(s) 486
Bse1I ACTGG 1 cut(s) 457
BseGI GGATG 3 cut(s) 259, 300, 310
BseLI CCNNNNNNNGG 1 cut(s) 486
BseMII CTCAG 1 cut(s) 439
BseNI ACTGG 1 cut(s) 457
BsgI GTGCAG 1 cut(s) 56
BshFI GGCC 2 cut(s) 18, 396
BsiHKCI CYCGRG 2 cut(s) 149, 486
BsiSI CCGG 1 cut(s) 480
BslI CCNNNNNNNGG 1 cut(s) 486
BsnI GGCC 2 cut(s) 18, 396
BsoBI CYCGRG 2 cut(s) 149, 486
Bsp119I TTCGAA 1 cut(s) 264
Bsp143I GATC 1 cut(s) 79
BspANI GGCC 2 cut(s) 18, 396
BspCNI CTCAG 1 cut(s) 438
BspLI GGNNCC 1 cut(s) 322
BspPI GGATC 1 cut(s) 74
BspQI GCTCTTC 1 cut(s) 131
BspT104I TTCGAA 1 cut(s) 264
BsrI ACTGG 1 cut(s) 457
BssMI GATC 1 cut(s) 79
BssSI CACGAG 1 cut(s) 123
Bst2BI CACGAG 1 cut(s) 123
Bst4CI ACNGT 2 cut(s) 325, 418
Bst6I CTCTTC 1 cut(s) 131
BstBI TTCGAA 1 cut(s) 264
BstC8I GCNNGC 1 cut(s) 107
BstDEI CTNAG 2 cut(s) 23, 425
BstF5I GGATG 3 cut(s) 259, 300, 310
BstHHI GCGC 1 cut(s) 300
BstKTI GATC 1 cut(s) 82
BstMBI GATC 1 cut(s) 79
BstMWI GCNNNNNNNGC 1 cut(s) 306
BstSCI CCNGG 1 cut(s) 478
BstSFI CTRYAG 1 cut(s) 385
BstV2I GAAGAC 2 cut(s) 125, 185
BsuRI GGCC 2 cut(s) 18, 396
BtsCI GGATG 3 cut(s) 259, 300, 310
BtsI GCAGTG 1 cut(s) 82
BtsIMutI CAGTG 1 cut(s) 82
Cac8I GCNNGC 1 cut(s) 107
CfoI GCGC 1 cut(s) 300
Cfr13I GGNCC 2 cut(s) 16, 272
CseI GACGC 1 cut(s) 130
Csp6I GTAC 1 cut(s) 338
CviAII CATG 1 cut(s) 412
CviJI RGCY 5 cut(s) 18, 329, 375, 396, 483
CviKI_1 RGCY 5 cut(s) 18, 329, 375, 396, 483
CviQI GTAC 1 cut(s) 338
DdeI CTNAG 2 cut(s) 23, 425
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
EaeI YGGCCR 1 cut(s) 394
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Eco47I GGWCC 1 cut(s) 272
Eco88I CYCGRG 2 cut(s) 149, 486
EcoRI GAATTC 1 cut(s) 260
FaeI CATG 1 cut(s) 415
FaiI YATR 5 cut(s) 204, 216, 387, 399, 413
FatI CATG 1 cut(s) 411
FokI GGATG 3 cut(s) 266, 307, 317
GlaI GCGC 1 cut(s) 299
GsuI CTGGAG 1 cut(s) 440
HaeIII GGCC 2 cut(s) 18, 396
HapII CCGG 1 cut(s) 480
HgaI GACGC 1 cut(s) 130
HhaI GCGC 1 cut(s) 300
Hin1II CATG 1 cut(s) 415
Hin6I GCGC 1 cut(s) 298
HinP1I GCGC 1 cut(s) 298
HinfI GANTC 3 cut(s) 27, 121, 185
HpaII CCGG 1 cut(s) 480
HphI GGTGA 1 cut(s) 142
Hpy188I TCNGA 3 cut(s) 12, 71, 428
Hpy188III TCNNGA 5 cut(s) 149, 236, 281, 333, 406
HpyCH4III ACNGT 2 cut(s) 325, 418
HpyCH4V TGCA 1 cut(s) 37
HpyF10VI GCNNNNNNNGC 1 cut(s) 306
HpyF3I CTNAG 2 cut(s) 23, 425
Hsp92II CATG 1 cut(s) 415
HspAI GCGC 1 cut(s) 298
Kzo9I GATC 1 cut(s) 79
LguI GCTCTTC 1 cut(s) 131
LmnI GCTCC 2 cut(s) 4, 380
LpnPI CCDG 5 cut(s) 210, 334, 419, 470, 493
LweI GCATC 3 cut(s) 16, 244, 285
MaeIII GTNAC 1 cut(s) 459
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MboII GAAGA 5 cut(s) 130, 145, 148, 173, 185
MfeI CAATTG 1 cut(s) 177
MlsI TGGCCA 1 cut(s) 396
MluCI AATT 4 cut(s) 113, 177, 260, 267
MluNI TGGCCA 1 cut(s) 396
MlyI GAGTC 1 cut(s) 115
MnlI CCTC 2 cut(s) 29, 35
Mox20I TGGCCA 1 cut(s) 396
MscI TGGCCA 1 cut(s) 396
MseI TTAA 1 cut(s) 167
MslI CAYNNNNRTG 1 cut(s) 98
Msp20I TGGCCA 1 cut(s) 396
MspI CCGG 1 cut(s) 480
MspR9I CCNGG 1 cut(s) 480
MunI CAATTG 1 cut(s) 177
MwoI GCNNNNNNNGC 1 cut(s) 306
NciI CCSGG 1 cut(s) 480
NdeII GATC 1 cut(s) 79
NlaIII CATG 1 cut(s) 415
NlaIV GGNNCC 1 cut(s) 322
NspV TTCGAA 1 cut(s) 264
PciSI GCTCTTC 1 cut(s) 131
PfeI GAWTC 2 cut(s) 27, 185
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 322
PspPI GGNCC 2 cut(s) 16, 272
PsrI GAACNNNNNNTAC 2 cut(s) 444, 476
RsaI GTAC 1 cut(s) 339
RsaNI GTAC 1 cut(s) 338
RseI CAYNNNNRTG 1 cut(s) 98
SapI GCTCTTC 1 cut(s) 131
SaqAI TTAA 1 cut(s) 167
Sau3AI GATC 1 cut(s) 79
Sau96I GGNCC 2 cut(s) 16, 272
SchI GAGTC 1 cut(s) 115
ScrFI CCNGG 1 cut(s) 480
SetI ASST 3 cut(s) 54, 331, 377
SfaNI GCATC 3 cut(s) 16, 244, 285
SfcI CTRYAG 1 cut(s) 385
SfuI TTCGAA 1 cut(s) 264
SinI GGWCC 1 cut(s) 272
SmiMI CAYNNNNRTG 1 cut(s) 98
Sse9I AATT 4 cut(s) 113, 177, 260, 267
StyD4I CCNGG 1 cut(s) 478
TaaI ACNGT 2 cut(s) 325, 418
TaqI TCGA 1 cut(s) 264
TasI AATT 4 cut(s) 113, 177, 260, 267
TatI WGTACW 1 cut(s) 337
TfiI GAWTC 2 cut(s) 27, 185
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TscAI CASTG 1 cut(s) 82
TspGWI ACGGA 2 cut(s) 20, 307
TspRI CASTG 1 cut(s) 82
VpaK11BI GGWCC 1 cut(s) 272
XapI RAATTY 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.