Rmu_sc0000395.1_g000023

GTPase activator activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000395.1
OG0001057
Physical Location & Seq
Forward (+)
94716 .. 96091
1376 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000395.1_g000023.1.cds

Sequence Viewer

Length: 498 bp
atggagcatctgttgggccttcttagaatccgtgtgcagagaggaacaaaccttgctgttagagatgtcagaagcagtgatccttacgttgtcatcaaaatgggcaagcagaaattgaagactcgtgtggtgaagaagagcaccaatcccgagtggaacgaagatttaactctttcaatttcagattcaagtcttccaatccatattgctgtgtatgacaaagacacatttagtcttgatgacaagatgggggatgctgaattcgaaatcggtccatttcttgaagccatacggatgcgcttggaaggcgtggcaaatggaacggtagctgcaagagtacaaccaagcagggaaaactgccttgctgaagagagctccatcatctatagtgatggccgtattatccagaacatgactgtcagactcagaaatgtggagagtggggaagtggagctccagttacaatggattgatattcctggctctcggggtttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002376 GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004812 GO:0004818 GO:0004827 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006417 GO:0006418 GO:0006424 GO:0006433 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0008047 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009059 GO:0009611 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010243 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0010876 GO:0015711 GO:0015718 GO:0015849 GO:0015908 GO:0015909 GO:0016020 GO:0016043 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0017148 GO:0019222 GO:0019538 GO:0019752 GO:0019899 GO:0022607 GO:0030234 GO:0030695 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0032268 GO:0032269 GO:0032868 GO:0032869 GO:0032870 GO:0032991 GO:0033036 GO:0034097 GO:0034248 GO:0034249 GO:0034341 GO:0034641 GO:0034645 GO:0034660 GO:0035613 GO:0042221 GO:0042802 GO:0042803 GO:0043038 GO:0043039 GO:0043043 GO:0043085 GO:0043087 GO:0043167 GO:0043169 GO:0043170 GO:0043434 GO:0043436 GO:0043547 GO:0043603 GO:0043604 GO:0043900 GO:0043902 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044539 GO:0045087 GO:0045088 GO:0045089 GO:0046483 GO:0046872 GO:0046914 GO:0046942 GO:0046983 GO:0047484 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051020 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051246 GO:0051248 GO:0051336 GO:0051345 GO:0051716 GO:0060255 GO:0060589 GO:0065003 GO:0065007 GO:0065009 GO:0070887 GO:0071310 GO:0071345 GO:0071346 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0097452 GO:0098772 GO:0140098 GO:0140101 GO:1900424 GO:1900426 GO:1901000 GO:1901002 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902477 GO:1902479 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
ko00220 ko00250 ko00260 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00220 map00250 map00260 map00630 map00710 map01100 map01110 map01120 map01130 map01200 map01210 map01230
Pfam Domains
Protein Families
C2

Protein Analysis

165

Amino Acids

18.57

Weight (kDa)

5.77

Isoelectric Point (pI)

39.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 74
AcoI YGGCCR 1 cut(s) 394
AcsI RAATTY 1 cut(s) 260
AcuI CTGAAG 1 cut(s) 387
AfaI GTAC 1 cut(s) 339
AgsI TTSAA 4 cut(s) 118, 177, 189, 284
AjnI CCWGG 1 cut(s) 478
AluBI AGCT 3 cut(s) 329, 375, 454
AluI AGCT 3 cut(s) 329, 375, 454
Alw21I GWGCWC 3 cut(s) 143, 377, 456
AlwI GGATC 1 cut(s) 74
Ama87I CYCGRG 2 cut(s) 149, 486
AoxI GGCC 2 cut(s) 16, 394
ApeKI GCWGC 1 cut(s) 329
ApoI RAATTY 1 cut(s) 260
AspLEI GCGC 1 cut(s) 300
AspS9I GGNCC 2 cut(s) 16, 272
AsuHPI GGTGA 1 cut(s) 142
AsuII TTCGAA 1 cut(s) 264
AvaI CYCGRG 2 cut(s) 149, 486
AvaII GGWCC 1 cut(s) 272
BanII GRGCYC 2 cut(s) 377, 456
BauI CACGAG 1 cut(s) 123
BbsI GAAGAC 2 cut(s) 125, 185
Bbv12I GWGCWC 3 cut(s) 143, 377, 456
BbvI GCAGC 1 cut(s) 316
BccI CCATC 3 cut(s) 241, 386, 386
BceAI ACGGC 1 cut(s) 381
BciT130I CCWGG 1 cut(s) 480
BfmI CTRYAG 1 cut(s) 385
BisI GCNGC 1 cut(s) 330
BlsI GCNGC 1 cut(s) 331
Bme1390I CCNGG 1 cut(s) 480
Bme18I GGWCC 1 cut(s) 272
BmeT110I CYCGRG 2 cut(s) 149, 486
BmgT120I GGNCC 2 cut(s) 16, 272
BmrFI CCNGG 1 cut(s) 480
BmsI GCATC 3 cut(s) 16, 244, 285
BpiI GAAGAC 2 cut(s) 125, 185
BpmI CTGGAG 1 cut(s) 440
Bpu14I TTCGAA 1 cut(s) 264
BsaXI ACNNNNNCTCC 3 cut(s) 26, 443, 473
Bse1I ACTGG 1 cut(s) 457
BseBI CCWGG 1 cut(s) 480
BseGI GGATG 2 cut(s) 259, 300
BseMII CTCAG 1 cut(s) 439
BseNI ACTGG 1 cut(s) 457
BseXI GCAGC 1 cut(s) 316
BsgI GTGCAG 1 cut(s) 56
BshFI GGCC 2 cut(s) 18, 396
BsiHKAI GWGCWC 3 cut(s) 143, 377, 456
BsiHKCI CYCGRG 2 cut(s) 149, 486
BsnI GGCC 2 cut(s) 18, 396
BsoBI CYCGRG 2 cut(s) 149, 486
Bsp119I TTCGAA 1 cut(s) 264
Bsp1286I GDGCHC 3 cut(s) 143, 377, 456
Bsp143I GATC 1 cut(s) 79
BspANI GGCC 2 cut(s) 18, 396
BspCNI CTCAG 1 cut(s) 438
BspPI GGATC 1 cut(s) 74
BspQI GCTCTTC 1 cut(s) 131
BspT104I TTCGAA 1 cut(s) 264
BsrI ACTGG 1 cut(s) 457
BssMI GATC 1 cut(s) 79
BssSI CACGAG 1 cut(s) 123
Bst2BI CACGAG 1 cut(s) 123
Bst2UI CCWGG 1 cut(s) 480
Bst4CI ACNGT 2 cut(s) 325, 418
Bst6I CTCTTC 2 cut(s) 131, 363
BstBI TTCGAA 1 cut(s) 264
BstC8I GCNNGC 1 cut(s) 107
BstDEI CTNAG 2 cut(s) 23, 425
BstF5I GGATG 2 cut(s) 259, 300
BstHHI GCGC 1 cut(s) 300
BstKTI GATC 1 cut(s) 82
BstMBI GATC 1 cut(s) 79
BstMWI GCNNNNNNNGC 1 cut(s) 306
BstNI CCWGG 1 cut(s) 480
BstSCI CCNGG 1 cut(s) 478
BstSFI CTRYAG 1 cut(s) 385
BstV1I GCAGC 1 cut(s) 316
BstV2I GAAGAC 2 cut(s) 125, 185
BsuRI GGCC 2 cut(s) 18, 396
BtsCI GGATG 2 cut(s) 259, 300
BtsI GCAGTG 1 cut(s) 82
BtsIMutI CAGTG 1 cut(s) 82
Cac8I GCNNGC 1 cut(s) 107
CfoI GCGC 1 cut(s) 300
Cfr13I GGNCC 2 cut(s) 16, 272
Csp6I GTAC 1 cut(s) 338
CviAII CATG 1 cut(s) 412
CviJI RGCY 7 cut(s) 18, 287, 329, 375, 396, 454, 483
CviKI_1 RGCY 7 cut(s) 18, 287, 329, 375, 396, 454, 483
CviQI GTAC 1 cut(s) 338
DdeI CTNAG 2 cut(s) 23, 425
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
EaeI YGGCCR 1 cut(s) 394
Eam1104I CTCTTC 2 cut(s) 131, 363
EarI CTCTTC 2 cut(s) 131, 363
Ecl136II GAGCTC 2 cut(s) 375, 454
Eco24I GRGCYC 2 cut(s) 377, 456
Eco47I GGWCC 1 cut(s) 272
Eco53kI GAGCTC 2 cut(s) 375, 454
Eco57I CTGAAG 1 cut(s) 387
Eco88I CYCGRG 2 cut(s) 149, 486
EcoICRI GAGCTC 2 cut(s) 375, 454
EcoRI GAATTC 1 cut(s) 260
EcoRII CCWGG 1 cut(s) 478
EcoT38I GRGCYC 2 cut(s) 377, 456
FaeI CATG 1 cut(s) 415
FaiI YATR 5 cut(s) 204, 216, 290, 387, 413
FatI CATG 1 cut(s) 411
Fnu4HI GCNGC 1 cut(s) 330
FokI GGATG 2 cut(s) 266, 307
FriOI GRGCYC 2 cut(s) 377, 456
Fsp4HI GCNGC 1 cut(s) 330
GlaI GCGC 1 cut(s) 299
GluI GCNGC 1 cut(s) 330
GsuI CTGGAG 1 cut(s) 440
HaeIII GGCC 2 cut(s) 18, 396
HhaI GCGC 1 cut(s) 300
Hin1II CATG 1 cut(s) 415
Hin6I GCGC 1 cut(s) 298
HinP1I GCGC 1 cut(s) 298
HinfI GANTC 4 cut(s) 27, 121, 185, 423
HphI GGTGA 1 cut(s) 142
Hpy188I TCNGA 4 cut(s) 71, 184, 422, 428
Hpy188III TCNNGA 4 cut(s) 149, 236, 281, 406
HpyAV CCTTC 2 cut(s) 29, 299
HpyCH4III ACNGT 2 cut(s) 325, 418
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 2 cut(s) 37, 332
HpyF10VI GCNNNNNNNGC 1 cut(s) 306
HpyF3I CTNAG 2 cut(s) 23, 425
HpySE526I ACGT 1 cut(s) 87
Hsp92II CATG 1 cut(s) 415
HspAI GCGC 1 cut(s) 298
Kzo9I GATC 1 cut(s) 79
LguI GCTCTTC 1 cut(s) 131
LmnI GCTCC 4 cut(s) 4, 380, 451, 459
LpnPI CCDG 5 cut(s) 334, 419, 465, 470, 492
Lsp1109I GCAGC 1 cut(s) 316
LweI GCATC 3 cut(s) 16, 244, 285
MaeII ACGT 1 cut(s) 87
MaeIII GTNAC 1 cut(s) 459
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MboII GAAGA 6 cut(s) 130, 145, 148, 173, 185, 380
MhlI GDGCHC 3 cut(s) 143, 377, 456
MluCI AATT 3 cut(s) 113, 177, 260
MlyI GAGTC 2 cut(s) 115, 417
MnlI CCTC 1 cut(s) 35
MseI TTAA 1 cut(s) 167
MslI CAYNNNNRTG 2 cut(s) 98, 293
MspR9I CCNGG 1 cut(s) 480
MvaI CCWGG 1 cut(s) 480
MwoI GCNNNNNNNGC 1 cut(s) 306
NdeII GATC 1 cut(s) 79
NlaIII CATG 1 cut(s) 415
NspV TTCGAA 1 cut(s) 264
PciSI GCTCTTC 1 cut(s) 131
PfeI GAWTC 2 cut(s) 27, 185
PkrI GCNGC 1 cut(s) 331
PleI GAGTC 2 cut(s) 115, 417
PpsI GAGTC 2 cut(s) 115, 417
Psp124BI GAGCTC 2 cut(s) 377, 456
Psp6I CCWGG 1 cut(s) 478
PspGI CCWGG 1 cut(s) 478
PspPI GGNCC 2 cut(s) 16, 272
RsaI GTAC 1 cut(s) 339
RsaNI GTAC 1 cut(s) 338
RseI CAYNNNNRTG 2 cut(s) 98, 293
SacI GAGCTC 2 cut(s) 377, 456
SapI GCTCTTC 1 cut(s) 131
SaqAI TTAA 1 cut(s) 167
SatI GCNGC 1 cut(s) 330
Sau3AI GATC 1 cut(s) 79
Sau96I GGNCC 2 cut(s) 16, 272
SchI GAGTC 2 cut(s) 115, 417
ScrFI CCNGG 1 cut(s) 480
SduI GDGCHC 3 cut(s) 143, 377, 456
SetI ASST 5 cut(s) 54, 90, 331, 377, 456
SfaNI GCATC 3 cut(s) 16, 244, 285
SfcI CTRYAG 1 cut(s) 385
SfuI TTCGAA 1 cut(s) 264
SinI GGWCC 1 cut(s) 272
SmiMI CAYNNNNRTG 2 cut(s) 98, 293
Sse9I AATT 3 cut(s) 113, 177, 260
SstI GAGCTC 2 cut(s) 377, 456
StyD4I CCNGG 1 cut(s) 478
TaaI ACNGT 2 cut(s) 325, 418
TaiI ACGT 1 cut(s) 90
TaqI TCGA 1 cut(s) 264
TaqII GACCGA 1 cut(s) 260
TasI AATT 3 cut(s) 113, 177, 260
TatI WGTACW 1 cut(s) 337
TfiI GAWTC 2 cut(s) 27, 185
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TscAI CASTG 1 cut(s) 82
TseI GCWGC 1 cut(s) 329
TspGWI ACGGA 2 cut(s) 20, 307
TspRI CASTG 1 cut(s) 82
VpaK11BI GGWCC 1 cut(s) 272
XapI RAATTY 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.