Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001057

Physical Location & Seq

Genomic Coordinates Forward (+)

24745987 .. 24750697

Gene Structure 4711 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0258500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGTCAAAATCTGGAGCACTGGATCTGGCTTCTGGGGTTGGTGGGAAGATTGAGAGAAACCAAGTTCTTTCAGCTGTCCACAAATATGAGAAGTATCACTTTGGGGATGACGAAGACAGAAAAGCCAACTATACTGACATGGTTAACAAATACTATGATCTCGTCACAAGTTTTTATGAATATGGATGGGGTGAGTCCTTCCATTTTGCACCAAGATGGAAGCAAGAGTCCCTAAAAGAGAGCATCAAGCGGCATGAGCATTTTCTCGCTCTGCAACTGGGTCTAAAGCAAGGGCATAAGGTTTTGGATGTAGGATGTGGCATTGGTGGACCTATGAGAGAAATTACTAGATTCAGTGGGGCATCAGTTACAGGGATAAACAACAACGAATATCAAATAACTAGAGCAAAGGAACTCAATCATCTTGCAGGAGTGGATGAGACCTGCAACTTTGTCAAGGCAGACTTTATGAACATGCCATTTCCTGATAACACTTTTGATGCAATATTTGCAATAGAAGCCACATGCCATGCACCAAATGTGTTTGATTGCTACAAAGAAATATATCGAGTGTTGAAGCCAGGACAGTGTTTTGCTGCTTACGAGTGGTGCATTACTGACTCCTTTGATCGAACAAACCATGAACACCAGAGAATTAAGGGAGAAGTTGAGCTTGGCAATGGACTTCCTGATATCAGATCAAAAGAACAATGTATTCACGCTCTAAATGTTGCAGGTTTTGAGGTTATATGGGAAAATGACGTTTCTGTGGATTCACCGCTTCCTTGGTATATACCACTTGATAAAAGTCACATTTCATTGAGTAGCTTCCGGCTAACAGCTTTGGGGCGTTTCATTACTAGAACAATGGTCAAAGCCTTAGAGTTTTTACGCCTTGCCCCTGAGGGTAGCCAAAGAGTTCAGTCTTTCCTAGAGACAACAGCAGAAGCTCTTGTTGAAGGTGGAAGCAAAGGGATCTTCACACCAATGTACTTCTTCTTGGTTCAGAAGCCTGATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0008047 GO:0008150 GO:0008289 GO:0009611 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0023051 GO:0023056 GO:0030234 GO:0030695 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0043900 GO:0043902 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0080134 GO:0098772 GO:1900424 GO:1900426 GO:1901000 GO:1901002 GO:1901419 GO:1901421 GO:1902477 GO:1902479 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

340

Amino Acids

38.52

Weight (kDa)

5.86

Isoelectric Point (pI)

31.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CMAS	PF02353	42 - 231	3.6e-12	Mycolic acid cyclopropane synthetase
Ubie_methyltran	PF01209	88 - 202	4.6e-09	ubiE/COQ5 methyltransferase family
Methyltransf_23	PF13489	89 - 250	9e-10	Methyltransferase domain
Methyltransf_31	PF13847	96 - 217	4.9e-17	Methyltransferase domain
Methyltransf_25	PF13649	101 - 195	2.5e-19	Methyltransferase domain
Methyltransf_11	PF08241	102 - 197	1.3e-22	Methyltransferase domain
Methyltransf_12	PF08242	102 - 195	1.3e-09	Methyltransferase domain
Sterol_MT_C	PF08498	275 - 338	5.3e-27	Sterol methyltransferase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70810 AT5G37740 AT5G37740
fragaria_vesca	FvH4_1g27320 FvH4_1g28670 FvH4_1g28680 FvH4_1g28690 FvH4_2g18820
malus_domestica	MD09G1278700.v1.1 MD09G1278800.v1.1 MD09G1278900.v1.1 MD09G1279000.v1.1 MD17G1260900.v1.1
prunus_persica	Prupe.3G162700_v2.0.a1 Prupe.3G162800_v2.0.a1 Prupe.3G162900_v2.0.a1 Prupe.3G162900_v2.0.a1
pyrus_communis	pycom09g17860 pycom09g17870 pycom09g17880 pycom09g17890 pycom17g26160
rosa_chinensis	RchiOBHm_Chr3g0492961 RchiOBHm_Chr3g0492971 RchiOBHm_Chr3g0492991
rosa_laevigata	RLG00000022734 RLG00000022736 RLG00000022737 RLG00000022739 RLG00000022740 RLG00000022741
rosa_multiflora	Rmu_co8406109.1_g000001 Rmu_sc0000395.1_g000015 Rmu_sc0000395.1_g000023 Rmu_sc0000395.1_g000029 Rmu_sc0008956.1_g000004 Rmu_sc0016690.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391990 Rroxscaffold_6G00392000 Rroxscaffold_6G00392010
rosa_rugosa	Rorug03G0256700 Rorug03G0257800 Rorug03G0258000 Rorug03G0258400 Rorug03G0258500 Rorug03G0258500
rosa_samantha	Rh3AG306200 Rh3AG307300 Rh3AG307500 Rh3BG342700 Rh3BG342800 Rh3BG342900 Rh3CG340000 Rh3CG340200 Rh3DG342000 Rh3DG342200 Rh3DG342400
rosa_wichuraiana	Rw3G027020 Rw3G027030 Rw3G027040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	452, 725
AciI	CCGC	2 cut(s)	250, 779
AclWI	GGATC	2 cut(s)	30, 983
AfaI	GTAC	1 cut(s)	992
AgsI	TTSAA	2 cut(s)	577, 959
AjnI	CCWGG	1 cut(s)	580
AjuI	GAANNNNNNNTTGG	2 cut(s)	657, 689
AluBI	AGCT	5 cut(s)	74, 673, 828, 842, 950
AluI	AGCT	5 cut(s)	74, 673, 828, 842, 950
Alw21I	GWGCWC	1 cut(s)	19
Alw26I	GTCTC	2 cut(s)	434, 929
AlwI	GGATC	2 cut(s)	30, 983
ApeKI	GCWGC	1 cut(s)	596
AspS9I	GGNCC	1 cut(s)	329
AsuHPI	GGTGA	2 cut(s)	203, 768
AvaII	GGWCC	1 cut(s)	329
AxyI	CCTNAGG	1 cut(s)	903
BbsI	GAAGAC	1 cut(s)	120
Bbv12I	GWGCWC	1 cut(s)	19
BbvI	GCAGC	1 cut(s)	583
BccI	CCATC	2 cut(s)	180, 210
BciT130I	CCWGG	1 cut(s)	582
BcoDI	GTCTC	2 cut(s)	434, 929
BfaI	CTAG	4 cut(s)	348, 402, 861, 932
BfuAI	ACCTGC	2 cut(s)	452, 725
BisI	GCNGC	2 cut(s)	251, 597
BlsI	GCNGC	2 cut(s)	252, 598
Bme1390I	CCNGG	1 cut(s)	582
Bme18I	GGWCC	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	329
BmrFI	CCNGG	1 cut(s)	582
BmrI	ACTGGG	1 cut(s)	287
BmsI	GCATC	4 cut(s)	252, 371, 490, 1006
BmuI	ACTGGG	1 cut(s)	287
BpiI	GAAGAC	1 cut(s)	120
BpmI	CTGGAG	1 cut(s)	33
BsaI	GGTCTC	1 cut(s)	434
BsaJI	CCNNGG	1 cut(s)	785
Bse1I	ACTGG	2 cut(s)	24, 282
Bse21I	CCTNAGG	1 cut(s)	903
Bse3DI	GCAATG	1 cut(s)	685
BseBI	CCWGG	1 cut(s)	582
BseDI	CCNNGG	1 cut(s)	785
BseGI	GGATG	5 cut(s)	112, 191, 313, 320, 442
BseMI	GCAATG	1 cut(s)	685
BseMII	CTCAG	1 cut(s)	894
BseNI	ACTGG	2 cut(s)	24, 282
BseXI	GCAGC	1 cut(s)	583
BsiHKAI	GWGCWC	1 cut(s)	19
BsiSI	CCGG	1 cut(s)	832
BslFI	GGGAC	1 cut(s)	214
BsmAI	GTCTC	2 cut(s)	434, 929
BsmFI	GGGAC	1 cut(s)	214
Bso31I	GGTCTC	1 cut(s)	434
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp143I	GATC	5 cut(s)	22, 157, 628, 698, 975
BspACI	CCGC	2 cut(s)	250, 779
BspCNI	CTCAG	1 cut(s)	895
BspMI	ACCTGC	2 cut(s)	452, 725
BspPI	GGATC	2 cut(s)	30, 983
BspTNI	GGTCTC	1 cut(s)	434
BsrDI	GCAATG	1 cut(s)	685
BsrI	ACTGG	2 cut(s)	24, 282
BssECI	CCNNGG	1 cut(s)	785
BssMI	GATC	5 cut(s)	22, 157, 628, 698, 975
BssT1I	CCWWGG	1 cut(s)	785
Bst2UI	CCWGG	1 cut(s)	582
Bst4CI	ACNGT	1 cut(s)	588
BstAPI	GCANNNNNTGC	1 cut(s)	509
BstDEI	CTNAG	2 cut(s)	880, 903
BstF5I	GGATG	5 cut(s)	112, 191, 313, 320, 442
BstKTI	GATC	5 cut(s)	25, 160, 631, 701, 978
BstMAI	GTCTC	2 cut(s)	434, 929
BstMBI	GATC	5 cut(s)	22, 157, 628, 698, 975
BstMWI	GCNNNNNNNGC	3 cut(s)	256, 509, 518
BstNI	CCWGG	1 cut(s)	582
BstNSI	RCATGY	2 cut(s)	478, 528
BstSCI	CCNGG	1 cut(s)	580
BstV1I	GCAGC	1 cut(s)	583
BstV2I	GAAGAC	1 cut(s)	120
BstX2I	RGATCY	2 cut(s)	22, 975
BstYI	RGATCY	2 cut(s)	22, 975
Bsu36I	CCTNAGG	1 cut(s)	903
BtsCI	GGATG	5 cut(s)	112, 191, 313, 320, 442
BtsIMutI	CAGTG	3 cut(s)	17, 361, 593
BveI	ACCTGC	2 cut(s)	452, 725
Cfr13I	GGNCC	1 cut(s)	329
Csp6I	GTAC	1 cut(s)	991
CviAII	CATG	6 cut(s)	139, 254, 475, 525, 530, 641
CviQI	GTAC	1 cut(s)	991
DdeI	CTNAG	2 cut(s)	880, 903
DpnI	GATC	5 cut(s)	24, 159, 630, 700, 977
DpnII	GATC	5 cut(s)	22, 157, 628, 698, 975
Eco130I	CCWWGG	1 cut(s)	785
Eco31I	GGTCTC	1 cut(s)	434
Eco32I	GATATC	1 cut(s)	694
Eco47I	GGWCC	1 cut(s)	329
Eco81I	CCTNAGG	1 cut(s)	903
EcoRII	CCWGG	1 cut(s)	580
EcoRV	GATATC	1 cut(s)	694
EcoT14I	CCWWGG	1 cut(s)	785
EcoT22I	ATGCAT	1 cut(s)	1021
ErhI	CCWWGG	1 cut(s)	785
FaeI	CATG	6 cut(s)	142, 257, 478, 528, 533, 644
FalI	AAGNNNNNCTT	6 cut(s)	83, 115, 449, 481, 657, 689
FaqI	GGGAC	1 cut(s)	214
FatI	CATG	6 cut(s)	138, 253, 474, 524, 529, 640
Fnu4HI	GCNGC	2 cut(s)	251, 597
FokI	GGATG	5 cut(s)	119, 198, 320, 327, 449
Fsp4HI	GCNGC	2 cut(s)	251, 597
FspBI	CTAG	4 cut(s)	348, 402, 861, 932
GluI	GCNGC	2 cut(s)	251, 597
GsuI	CTGGAG	1 cut(s)	33
HapII	CCGG	1 cut(s)	832
Hin1II	CATG	6 cut(s)	142, 257, 478, 528, 533, 644
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HinfI	GANTC	5 cut(s)	194, 227, 351, 620, 773
HpaI	GTTAAC	1 cut(s)	145
HpaII	CCGG	1 cut(s)	832
HphI	GGTGA	2 cut(s)	203, 768
Hpy166II	GTNNAC	3 cut(s)	79, 145, 329
Hpy188I	TCNGA	2 cut(s)	698, 1008
Hpy188III	TCNNGA	3 cut(s)	12, 485, 689
Hpy8I	GTNNAC	3 cut(s)	79, 145, 329
HpyAV	CCTTC	2 cut(s)	208, 953
HpyCH4III	ACNGT	1 cut(s)	588
HpyCH4IV	ACGT	1 cut(s)	762
HpyF10VI	GCNNNNNNNGC	3 cut(s)	256, 509, 518
HpyF3I	CTNAG	2 cut(s)	880, 903
HpySE526I	ACGT	1 cut(s)	762
Hsp92II	CATG	6 cut(s)	142, 257, 478, 528, 533, 644
KspAI	GTTAAC	1 cut(s)	145
Kzo9I	GATC	5 cut(s)	22, 157, 628, 698, 975
LmnI	GCTCC	1 cut(s)	14
Lsp1109I	GCAGC	1 cut(s)	583
LweI	GCATC	4 cut(s)	252, 371, 490, 1006
MaeI	CTAG	4 cut(s)	348, 402, 861, 932
MaeII	ACGT	1 cut(s)	762
MaeIII	GTNAC	3 cut(s)	163, 367, 809
MalI	GATC	5 cut(s)	24, 159, 630, 700, 977
MboI	GATC	5 cut(s)	22, 157, 628, 698, 975
MboII	GAAGA	4 cut(s)	58, 125, 970, 988
MflI	RGATCY	2 cut(s)	22, 975
MhlI	GDGCHC	1 cut(s)	19
MluCI	AATT	2 cut(s)	342, 654
MlyI	GAGTC	3 cut(s)	203, 236, 614
MnlI	CCTC	2 cut(s)	736, 898
Mph1103I	ATGCAT	1 cut(s)	1021
MseI	TTAA	2 cut(s)	144, 657
MslI	CAYNNNNRTG	3 cut(s)	84, 214, 986
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	1 cut(s)	832
MspR9I	CCNGG	1 cut(s)	582
MvaI	CCWGG	1 cut(s)	582
MwoI	GCNNNNNNNGC	3 cut(s)	256, 509, 518
NdeII	GATC	5 cut(s)	22, 157, 628, 698, 975
NlaIII	CATG	6 cut(s)	142, 257, 478, 528, 533, 644
NmuCI	GTSAC	2 cut(s)	163, 809
NsiI	ATGCAT	1 cut(s)	1021
NspI	RCATGY	2 cut(s)	478, 528
PfeI	GAWTC	2 cut(s)	351, 773
PkrI	GCNGC	2 cut(s)	252, 598
PleI	GAGTC	3 cut(s)	202, 235, 614
PpsI	GAGTC	3 cut(s)	202, 235, 614
Psp6I	CCWGG	1 cut(s)	580
PspGI	CCWGG	1 cut(s)	580
PspPI	GGNCC	1 cut(s)	329
PsuI	RGATCY	2 cut(s)	22, 975
PvuII	CAGCTG	1 cut(s)	74
RsaI	GTAC	1 cut(s)	992
RsaNI	GTAC	1 cut(s)	991
RseI	CAYNNNNRTG	3 cut(s)	84, 214, 986
SaqAI	TTAA	2 cut(s)	144, 657
SatI	GCNGC	2 cut(s)	251, 597
Sau3AI	GATC	5 cut(s)	22, 157, 628, 698, 975
Sau96I	GGNCC	1 cut(s)	329
SchI	GAGTC	3 cut(s)	203, 236, 614
ScrFI	CCNGG	1 cut(s)	582
SduI	GDGCHC	1 cut(s)	19
SfaNI	GCATC	4 cut(s)	252, 371, 490, 1006
SinI	GGWCC	1 cut(s)	329
SmiMI	CAYNNNNRTG	3 cut(s)	84, 214, 986
Sse9I	AATT	2 cut(s)	342, 654
SsiI	CCGC	2 cut(s)	250, 779
SspI	AATATT	1 cut(s)	507
SspMI	CTAG	4 cut(s)	348, 402, 861, 932
StyD4I	CCNGG	1 cut(s)	580
StyI	CCWWGG	1 cut(s)	785
TaaI	ACNGT	1 cut(s)	588
TaiI	ACGT	1 cut(s)	765
TaqI	TCGA	2 cut(s)	568, 631
TasI	AATT	2 cut(s)	342, 654
TatI	WGTACW	1 cut(s)	990
TauI	GCSGC	1 cut(s)	253
TfiI	GAWTC	2 cut(s)	351, 773
Tru1I	TTAA	2 cut(s)	144, 657
Tru9I	TTAA	2 cut(s)	144, 657
TscAI	CASTG	3 cut(s)	24, 361, 593
TseFI	GTSAC	2 cut(s)	163, 809
TseI	GCWGC	1 cut(s)	596
Tsp45I	GTSAC	2 cut(s)	163, 809
TspDTI	ATGAA	5 cut(s)	192, 485, 657, 807, 844
TspRI	CASTG	3 cut(s)	24, 361, 593
VpaK11BI	GGWCC	1 cut(s)	329
XceI	RCATGY	2 cut(s)	478, 528
XspI	CTAG	4 cut(s)	348, 402, 861, 932
Zsp2I	ATGCAT	1 cut(s)	1021

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.