Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001057

Physical Location & Seq

Genomic Coordinates Reverse (-)

24556708 .. 24557673

Gene Structure 966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0257800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGCAATTTCTTGTTTCATGATGAGCCTAGAAGACCTTGATGTCGGTGTTGTGAAGACGTTCCACCCCACTGATTCTGATTTAGTGGGAAGCTATCTCTACAACAGAATCAAAACCCCAACCCCAATTGGAGGAAAACAAACATTCCCTGAGATTGAAATATATGGCACCACAGGTTTACCACCATGGGAAATTTGGAGAATTTATGAGCCTTCCAAATTTCCACATCAAGATTATATCTATTTCTTCTCCCGGGTCAAGAAGTTGGGTTCCCGCTGTTCTCGCAGAATTGGCTGCGATGGGGGCACCTGGAGCGAGACGGAAGCTGCTAAACCTGTCTATGTCAGTGGAATTGAAGAGCCTTATGGGAAACTAAGGAAGTTTAGATACGAGAACAACAAAGACAAGGGCTTTGAACACCATGCTGCTTGGTTGATGGATGAGTACACCATCAACCAAGCACCCGATCTGGCTTTGTGCCGACTCAAAGTCAATTATAAAGGAGCTGGAGGAAGAAAAAAGAGGAAGAAGAGTTCTGCTGAGACTAATGAGGATGAGAATCACAGAAAGACAATGTCTTTCAAAAACCGAAAACTTGAACCGAAAAGAGTTCAAGTTCAAAACAACATGTGTGAGCAACAAATGGGAAGTGCCTCATTTAGTACTACTAGCACTACACAGCAACTGCCCCCACAATTTGATGATCATGGTTACTGTATGGATGAGAACCTACTTTTCTCTCCAACCGGCTTGGTTGATGATTATGATGACATTTTGAATAGTGATCAGTTTATGGCTTCTCTTGATCAATGGTATGAGGAACAACTACAACAGTTTTCGGATTCTTCACTACTAGTGCCGCAGCAAGAAGTAGAACCTAACAACAGTTGTGAGGAACAACAACAGCAACAAGATGAGCAGCAGCTCTGTGGTGGTTTCCTCGACTCCAACTTCTTCCTCCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0008047 GO:0008150 GO:0008289 GO:0009611 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0023051 GO:0023056 GO:0030234 GO:0030695 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0043900 GO:0043902 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0080134 GO:0098772 GO:1900424 GO:1900426 GO:1901000 GO:1901002 GO:1901419 GO:1901421 GO:1902477 GO:1902479 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00260 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00220 map00250 map00260 map00630 map00710 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Protein Analysis

321

Amino Acids

36.97

Weight (kDa)

5.08

Isoelectric Point (pI)

52.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	20 - 150	1.7e-16	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70810 AT5G37740 AT5G37740
fragaria_vesca	FvH4_1g27320 FvH4_1g28670 FvH4_1g28680 FvH4_1g28690 FvH4_2g18820
malus_domestica	MD09G1278700.v1.1 MD09G1278800.v1.1 MD09G1278900.v1.1 MD09G1279000.v1.1 MD17G1260900.v1.1
prunus_persica	Prupe.3G162700_v2.0.a1 Prupe.3G162800_v2.0.a1 Prupe.3G162900_v2.0.a1 Prupe.3G162900_v2.0.a1
pyrus_communis	pycom09g17860 pycom09g17870 pycom09g17880 pycom09g17890 pycom17g26160
rosa_chinensis	RchiOBHm_Chr3g0492961 RchiOBHm_Chr3g0492971 RchiOBHm_Chr3g0492991
rosa_laevigata	RLG00000022734 RLG00000022736 RLG00000022737 RLG00000022739 RLG00000022740 RLG00000022741
rosa_multiflora	Rmu_co8406109.1_g000001 Rmu_sc0000395.1_g000015 Rmu_sc0000395.1_g000023 Rmu_sc0000395.1_g000029 Rmu_sc0008956.1_g000004 Rmu_sc0016690.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391990 Rroxscaffold_6G00392000 Rroxscaffold_6G00392010
rosa_rugosa	Rorug03G0256700 Rorug03G0257800 Rorug03G0258000 Rorug03G0258400 Rorug03G0258500 Rorug03G0258500
rosa_samantha	Rh3AG306200 Rh3AG307300 Rh3AG307500 Rh3BG342700 Rh3BG342800 Rh3BG342900 Rh3CG340000 Rh3CG340200 Rh3DG342000 Rh3DG342200 Rh3DG342400
rosa_wichuraiana	Rw3G027020 Rw3G027030 Rw3G027040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	498
AasI	GACNNNNNNGTC	1 cut(s)	41
AccB1I	GGYRCC	2 cut(s)	167, 305
AciI	CCGC	2 cut(s)	274, 860
AcsI	RAATTY	3 cut(s)	192, 201, 218
AfaI	GTAC	2 cut(s)	446, 664
AfiI	CCNNNNNNNGG	1 cut(s)	131
AflIII	ACRYGT	1 cut(s)	627
AgsI	TTSAA	8 cut(s)	158, 356, 416, 583, 599, 614, 620, 778
AhdI	GACNNNNNGTC	1 cut(s)	488
AhlI	ACTAGT	1 cut(s)	853
AjnI	CCWGG	1 cut(s)	308
AloI	GAACNNNNNNTCC	2 cut(s)	517, 549
AluBI	AGCT	4 cut(s)	93, 326, 506, 925
AluI	AGCT	4 cut(s)	93, 326, 506, 925
Alw26I	GTCTC	2 cut(s)	311, 536
AlwNI	CAGNNNCTG	1 cut(s)	685
Ama87I	CYCGRG	1 cut(s)	252
ApeKI	GCWGC	6 cut(s)	294, 326, 425, 862, 919, 922
ApoI	RAATTY	3 cut(s)	192, 201, 218
ArsI	GACNNNNNNTTYG	2 cut(s)	395, 427
Asp700I	GAANNNNTTC	1 cut(s)	59
AsuC2I	CCSGG	2 cut(s)	253, 254
AvaI	CYCGRG	1 cut(s)	252
BaeGI	GKGCMC	1 cut(s)	308
BanI	GGYRCC	2 cut(s)	167, 305
BarI	GAAGNNNNNNTAC	2 cut(s)	371, 403
BbsI	GAAGAC	2 cut(s)	39, 62
BbvI	GCAGC	6 cut(s)	281, 313, 412, 874, 931, 934
BccI	CCATC	3 cut(s)	293, 430, 458
BciT130I	CCWGG	1 cut(s)	310
BclI	TGATCA	3 cut(s)	703, 784, 805
BcnI	CCSGG	2 cut(s)	253, 254
BcoDI	GTCTC	2 cut(s)	311, 536
BcuI	ACTAGT	1 cut(s)	853
BfaI	CTAG	4 cut(s)	29, 669, 854, 964
BisI	GCNGC	7 cut(s)	295, 327, 426, 860, 863, 920, 923
BlsI	GCNGC	7 cut(s)	296, 328, 427, 861, 864, 921, 924
BmcAI	AGTACT	1 cut(s)	664
Bme1390I	CCNGG	3 cut(s)	253, 254, 310
BmeRI	GACNNNNNGTC	1 cut(s)	488
BmeT110I	CYCGRG	1 cut(s)	252
BmiI	GGNNCC	3 cut(s)	169, 271, 307
BmrFI	CCNGG	3 cut(s)	253, 254, 310
BpiI	GAAGAC	2 cut(s)	39, 62
BpmI	CTGGAG	2 cut(s)	331, 528
BpuMI	CCSGG	2 cut(s)	253, 254
BsaBI	GATNNNNATC	1 cut(s)	558
BsaJI	CCNNGG	2 cut(s)	185, 252
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
Bse118I	RCCGGY	1 cut(s)	746
Bse8I	GATNNNNATC	1 cut(s)	558
BseBI	CCWGG	1 cut(s)	310
BseDI	CCNNGG	2 cut(s)	185, 252
BseGI	GGATG	3 cut(s)	445, 559, 727
BseJI	GATNNNNATC	1 cut(s)	558
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseMII	CTCAG	2 cut(s)	141, 531
BseSI	GKGCMC	1 cut(s)	308
BseXI	GCAGC	6 cut(s)	281, 313, 412, 874, 931, 934
BshNI	GGYRCC	2 cut(s)	167, 305
BsiHKCI	CYCGRG	1 cut(s)	252
BsiSI	CCGG	2 cut(s)	253, 747
BslI	CCNNNNNNNGG	1 cut(s)	131
BsmAI	GTCTC	2 cut(s)	311, 536
BsmBI	CGTCTC	1 cut(s)	311
BsoBI	CYCGRG	1 cut(s)	252
Bsp1286I	GDGCHC	1 cut(s)	308
Bsp143I	GATC	4 cut(s)	466, 703, 784, 805
Bsp19I	CCATGG	1 cut(s)	185
BspACI	CCGC	2 cut(s)	274, 860
BspCNI	CTCAG	2 cut(s)	142, 532
BspHI	TCATGA	1 cut(s)	18
BspLI	GGNNCC	3 cut(s)	169, 271, 307
BspQI	GCTCTTC	1 cut(s)	351
BspT107I	GGYRCC	2 cut(s)	167, 305
BsrFI	RCCGGY	1 cut(s)	746
BssAI	RCCGGY	1 cut(s)	746
BssECI	CCNNGG	2 cut(s)	185, 252
BssMI	GATC	4 cut(s)	466, 703, 784, 805
BssT1I	CCWWGG	1 cut(s)	185
Bst2UI	CCWGG	1 cut(s)	310
Bst4CI	ACNGT	3 cut(s)	716, 834, 887
Bst6I	CTCTTC	2 cut(s)	351, 524
BstDEI	CTNAG	3 cut(s)	150, 374, 540
BstDSI	CCRYGG	1 cut(s)	185
BstF5I	GGATG	3 cut(s)	445, 559, 727
BstKTI	GATC	4 cut(s)	469, 706, 787, 808
BstMAI	GTCTC	2 cut(s)	311, 536
BstMBI	GATC	4 cut(s)	466, 703, 784, 805
BstMWI	GCNNNNNNNGC	4 cut(s)	282, 291, 303, 312
BstNI	CCWGG	1 cut(s)	310
BstNSI	RCATGY	1 cut(s)	631
BstSCI	CCNGG	3 cut(s)	251, 252, 308
BstSLI	GKGCMC	1 cut(s)	308
BstV1I	GCAGC	6 cut(s)	281, 313, 412, 874, 931, 934
BstV2I	GAAGAC	2 cut(s)	39, 62
BtgI	CCRYGG	1 cut(s)	185
BtgZI	GCGATG	1 cut(s)	312
BtsCI	GGATG	3 cut(s)	445, 559, 727
BtsIMutI	CAGTG	2 cut(s)	69, 352
CaiI	CAGNNNCTG	1 cut(s)	685
CciI	TCATGA	1 cut(s)	18
Cfr10I	RCCGGY	1 cut(s)	746
Cfr9I	CCCGGG	1 cut(s)	252
Csp6I	GTAC	2 cut(s)	445, 663
CviAII	CATG	5 cut(s)	19, 186, 422, 628, 707
CviQI	GTAC	2 cut(s)	445, 663
DdeI	CTNAG	3 cut(s)	150, 374, 540
DpnI	GATC	4 cut(s)	468, 705, 786, 807
DpnII	GATC	4 cut(s)	466, 703, 784, 805
DrdI	GACNNNNNNGTC	1 cut(s)	41
DriI	GACNNNNNGTC	1 cut(s)	488
DseDI	GACNNNNNNGTC	1 cut(s)	41
Eam1104I	CTCTTC	2 cut(s)	351, 524
Eam1105I	GACNNNNNGTC	1 cut(s)	488
EarI	CTCTTC	2 cut(s)	351, 524
Eco130I	CCWWGG	1 cut(s)	185
Eco88I	CYCGRG	1 cut(s)	252
EcoRII	CCWGG	1 cut(s)	308
EcoT14I	CCWWGG	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	185
Esp3I	CGTCTC	1 cut(s)	311
FaeI	CATG	5 cut(s)	22, 189, 425, 631, 710
FatI	CATG	5 cut(s)	18, 185, 421, 627, 706
FauI	CCCGC	1 cut(s)	281
FbaI	TGATCA	3 cut(s)	703, 784, 805
Fnu4HI	GCNGC	7 cut(s)	295, 327, 426, 860, 863, 920, 923
FokI	GGATG	3 cut(s)	452, 566, 734
Fsp4HI	GCNGC	7 cut(s)	295, 327, 426, 860, 863, 920, 923
FspBI	CTAG	4 cut(s)	29, 669, 854, 964
GluI	GCNGC	7 cut(s)	295, 327, 426, 860, 863, 920, 923
GsuI	CTGGAG	2 cut(s)	331, 528
HapII	CCGG	2 cut(s)	253, 747
Hin1II	CATG	5 cut(s)	22, 189, 425, 631, 710
HinfI	GANTC	6 cut(s)	74, 108, 483, 559, 842, 944
HpaII	CCGG	2 cut(s)	253, 747
Hpy166II	GTNNAC	2 cut(s)	179, 447
Hpy188I	TCNGA	2 cut(s)	79, 841
Hpy188III	TCNNGA	4 cut(s)	19, 230, 259, 803
Hpy8I	GTNNAC	2 cut(s)	179, 447
HpyAV	CCTTC	1 cut(s)	222
HpyCH4III	ACNGT	3 cut(s)	716, 834, 887
HpyCH4IV	ACGT	1 cut(s)	59
HpyF10VI	GCNNNNNNNGC	4 cut(s)	282, 291, 303, 312
HpyF3I	CTNAG	3 cut(s)	150, 374, 540
HpySE526I	ACGT	1 cut(s)	59
Hsp92II	CATG	5 cut(s)	22, 189, 425, 631, 710
Ksp22I	TGATCA	3 cut(s)	703, 784, 805
Kzo9I	GATC	4 cut(s)	466, 703, 784, 805
LguI	GCTCTTC	1 cut(s)	351
LmnI	GCTCC	2 cut(s)	312, 503
LpnPI	CCDG	9 cut(s)	159, 162, 266, 295, 322, 348, 455, 492, 760
Lsp1109I	GCAGC	6 cut(s)	281, 313, 412, 874, 931, 934
MaeI	CTAG	4 cut(s)	29, 669, 854, 964
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	710
MalI	GATC	4 cut(s)	468, 705, 786, 807
MboI	GATC	4 cut(s)	466, 703, 784, 805
MboII	GAAGA	9 cut(s)	44, 67, 238, 368, 525, 538, 541, 837, 946
MfeI	CAATTG	1 cut(s)	126
MhlI	GDGCHC	1 cut(s)	308
MluCI	AATT	9 cut(s)	6, 126, 192, 201, 218, 288, 351, 493, 695
MlyI	GAGTC	2 cut(s)	477, 938
MmeI	TCCRAC	1 cut(s)	767
MnlI	CCTC	8 cut(s)	125, 503, 516, 544, 664, 811, 886, 950
MroXI	GAANNNNTTC	1 cut(s)	59
MspA1I	CMGCKG	1 cut(s)	276
MspI	CCGG	2 cut(s)	253, 747
MspR9I	CCNGG	3 cut(s)	253, 254, 310
MunI	CAATTG	1 cut(s)	126
MvaI	CCWGG	1 cut(s)	310
MwoI	GCNNNNNNNGC	4 cut(s)	282, 291, 303, 312
NciI	CCSGG	2 cut(s)	253, 254
NcoI	CCATGG	1 cut(s)	185
NdeII	GATC	4 cut(s)	466, 703, 784, 805
NlaIII	CATG	5 cut(s)	22, 189, 425, 631, 710
NlaIV	GGNNCC	3 cut(s)	169, 271, 307
NspI	RCATGY	1 cut(s)	631
PagI	TCATGA	1 cut(s)	18
PciI	ACATGT	1 cut(s)	627
PciSI	GCTCTTC	1 cut(s)	351
PdmI	GAANNNNTTC	1 cut(s)	59
PfeI	GAWTC	4 cut(s)	74, 108, 559, 842
PflFI	GACNNNGTC	1 cut(s)	574
PkrI	GCNGC	7 cut(s)	296, 328, 427, 861, 864, 921, 924
PleI	GAGTC	2 cut(s)	477, 938
PpsI	GAGTC	2 cut(s)	477, 938
PscI	ACATGT	1 cut(s)	627
PsiI	TTATAA	1 cut(s)	498
Psp6I	CCWGG	1 cut(s)	308
PspGI	CCWGG	1 cut(s)	308
PspN4I	GGNNCC	3 cut(s)	169, 271, 307
PstNI	CAGNNNCTG	1 cut(s)	685
PsyI	GACNNNGTC	1 cut(s)	574
RsaI	GTAC	2 cut(s)	446, 664
RsaNI	GTAC	2 cut(s)	445, 663
SapI	GCTCTTC	1 cut(s)	351
SatI	GCNGC	7 cut(s)	295, 327, 426, 860, 863, 920, 923
Sau3AI	GATC	4 cut(s)	466, 703, 784, 805
ScaI	AGTACT	1 cut(s)	664
SchI	GAGTC	2 cut(s)	477, 938
ScrFI	CCNGG	3 cut(s)	253, 254, 310
SduI	GDGCHC	1 cut(s)	308
SmaI	CCCGGG	1 cut(s)	254
SpeI	ACTAGT	1 cut(s)	853
Sse9I	AATT	9 cut(s)	6, 126, 192, 201, 218, 288, 351, 493, 695
SsiI	CCGC	2 cut(s)	274, 860
SspMI	CTAG	4 cut(s)	29, 669, 854, 964
StyD4I	CCNGG	3 cut(s)	251, 252, 308
StyI	CCWWGG	1 cut(s)	185
TaaI	ACNGT	3 cut(s)	716, 834, 887
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	1 cut(s)	942
TasI	AATT	9 cut(s)	6, 126, 192, 201, 218, 288, 351, 493, 695
TatI	WGTACW	2 cut(s)	444, 662
TauI	GCSGC	1 cut(s)	862
TfiI	GAWTC	4 cut(s)	74, 108, 559, 842
TscAI	CASTG	2 cut(s)	76, 352
TseI	GCWGC	6 cut(s)	294, 326, 425, 862, 919, 922
TspDTI	ATGAA	1 cut(s)	7
TspGWI	ACGGA	1 cut(s)	335
TspMI	CCCGGG	1 cut(s)	252
TspRI	CASTG	2 cut(s)	76, 352
Tth111I	GACNNNGTC	1 cut(s)	574
XapI	RAATTY	3 cut(s)	192, 201, 218
XceI	RCATGY	1 cut(s)	631
XcmI	CCANNNNNNNNNTGG	1 cut(s)	192
XmaI	CCCGGG	1 cut(s)	252
XmnI	GAANNNNTTC	1 cut(s)	59
XspI	CTAG	4 cut(s)	29, 669, 854, 964
ZrmI	AGTACT	1 cut(s)	664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.