Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001057

Physical Location & Seq

Genomic Coordinates Reverse (-)

38314501 .. 38316678

Gene Structure 2178 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG307300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGAGAACCTGTTGGGTCTGTTGAGAATTCATATCCAAAGAGGAGTGAACCTTGCCGTCAGAGACATGAGAAGCAGCGACCCTTATCTCATTGTCAGAATGGGCAAGCAGAAGCTAAAGACTCGTGTAGTGAAGAAGAGCGTGAATCCAGAGTGGAATGAACAATTGACTCTTTCAATTGCTGATCCAAGTCTTCCGATCCTGGTCTCTGTGTATGACAAGGATACATTTAGTTTTGATGACAAAATGGGGGATGCAGAGTTTGAGATTGGTCCATTCATTAAAGCCTTGAAGATGGGTTTCCAAGGCCTTGAAGATGGAGCCATAATTTCTAAAGTGCAGGCAAACAAGCAAAATTGTCTAGCTGAAGAGAGCTGCATTATTTACTCCGAAGGCAAACTTGTACAGAACATGGTTCTCAGACTCAGAAATGTGGAGTGCGGGGAAGTGGAACTCCAATTGCAGTGGATTGATGTACCTAGTTCTAGGGGTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0008047 GO:0008150 GO:0008289 GO:0009611 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0023051 GO:0023056 GO:0030234 GO:0030695 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0043900 GO:0043902 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0080134 GO:0098772 GO:1900424 GO:1900426 GO:1901000 GO:1901002 GO:1901419 GO:1901421 GO:1902477 GO:1902479 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00260 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00220 map00250 map00260 map00630 map00710 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Protein Analysis

165

Amino Acids

18.62

Weight (kDa)

5.91

Isoelectric Point (pI)

49.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	6 - 92	5e-22	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70810 AT5G37740 AT5G37740
fragaria_vesca	FvH4_1g27320 FvH4_1g28670 FvH4_1g28680 FvH4_1g28690 FvH4_2g18820
malus_domestica	MD09G1278700.v1.1 MD09G1278800.v1.1 MD09G1278900.v1.1 MD09G1279000.v1.1 MD17G1260900.v1.1
prunus_persica	Prupe.3G162700_v2.0.a1 Prupe.3G162800_v2.0.a1 Prupe.3G162900_v2.0.a1 Prupe.3G162900_v2.0.a1
pyrus_communis	pycom09g17860 pycom09g17870 pycom09g17880 pycom09g17890 pycom17g26160
rosa_chinensis	RchiOBHm_Chr3g0492961 RchiOBHm_Chr3g0492971 RchiOBHm_Chr3g0492991
rosa_laevigata	RLG00000022734 RLG00000022736 RLG00000022737 RLG00000022739 RLG00000022740 RLG00000022741
rosa_multiflora	Rmu_co8406109.1_g000001 Rmu_sc0000395.1_g000015 Rmu_sc0000395.1_g000023 Rmu_sc0000395.1_g000029 Rmu_sc0008956.1_g000004 Rmu_sc0016690.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391990 Rroxscaffold_6G00392000 Rroxscaffold_6G00392010
rosa_rugosa	Rorug03G0256700 Rorug03G0257800 Rorug03G0258000 Rorug03G0258400 Rorug03G0258500 Rorug03G0258500
rosa_samantha	Rh3AG306200 Rh3AG307300 Rh3AG307500 Rh3BG342700 Rh3BG342800 Rh3BG342900 Rh3CG340000 Rh3CG340200 Rh3DG342000 Rh3DG342200 Rh3DG342400
rosa_wichuraiana	Rw3G027020 Rw3G027030 Rw3G027040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	441
AclWI	GGATC	2 cut(s)	179, 193
AcsI	RAATTY	1 cut(s)	27
AcuI	CTGAAG	1 cut(s)	387
AfaI	GTAC	2 cut(s)	405, 477
AgsI	TTSAA	3 cut(s)	177, 292, 314
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	3 cut(s)	115, 365, 375
AluI	AGCT	3 cut(s)	115, 365, 375
Alw26I	GTCTC	2 cut(s)	57, 211
AlwI	GGATC	2 cut(s)	179, 193
AoxI	GGCC	1 cut(s)	307
ApeKI	GCWGC	2 cut(s)	75, 375
ApoI	RAATTY	1 cut(s)	27
AspS9I	GGNCC	1 cut(s)	272
AvaII	GGWCC	1 cut(s)	272
BauI	CACGAG	1 cut(s)	123
BbsI	GAAGAC	1 cut(s)	185
BbvI	GCAGC	2 cut(s)	87, 362
BccI	CCATC	2 cut(s)	289, 311
BceAI	ACGGC	1 cut(s)	41
BciT130I	CCWGG	1 cut(s)	203
BciVI	GTATCC	1 cut(s)	217
BcoDI	GTCTC	2 cut(s)	57, 211
BfaI	CTAG	3 cut(s)	362, 480, 486
BfmI	CTRYAG	1 cut(s)	494
BfuI	GTATCC	1 cut(s)	217
BisI	GCNGC	2 cut(s)	76, 376
BlsI	GCNGC	2 cut(s)	77, 377
Bme1390I	CCNGG	1 cut(s)	203
Bme18I	GGWCC	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	272
BmiI	GGNNCC	1 cut(s)	322
BmrFI	CCNGG	1 cut(s)	203
BmsI	GCATC	1 cut(s)	244
BpiI	GAAGAC	1 cut(s)	185
BsaI	GGTCTC	1 cut(s)	211
BsaJI	CCNNGG	1 cut(s)	304
BsaXI	ACNNNNNCTCC	1 cut(s)	26
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	1 cut(s)	304
BseGI	GGATG	1 cut(s)	259
BseMII	CTCAG	2 cut(s)	433, 439
BseRI	GAGGAG	1 cut(s)	57
BseXI	GCAGC	2 cut(s)	87, 362
BsgI	GTGCAG	1 cut(s)	359
BshFI	GGCC	1 cut(s)	309
BsmAI	GTCTC	2 cut(s)	57, 211
BsnI	GGCC	1 cut(s)	309
Bso31I	GGTCTC	1 cut(s)	211
Bsp1407I	TGTACA	1 cut(s)	403
Bsp143I	GATC	2 cut(s)	184, 198
BspACI	CCGC	1 cut(s)	441
BspANI	GGCC	1 cut(s)	309
BspCNI	CTCAG	2 cut(s)	432, 438
BspLI	GGNNCC	1 cut(s)	322
BspPI	GGATC	2 cut(s)	179, 193
BspQI	GCTCTTC	1 cut(s)	131
BspTNI	GGTCTC	1 cut(s)	211
BsrGI	TGTACA	1 cut(s)	403
BssECI	CCNNGG	1 cut(s)	304
BssMI	GATC	2 cut(s)	184, 198
BssSI	CACGAG	1 cut(s)	123
BssT1I	CCWWGG	1 cut(s)	304
Bst2BI	CACGAG	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	203
Bst6I	CTCTTC	2 cut(s)	131, 363
BstAUI	TGTACA	1 cut(s)	403
BstC8I	GCNNGC	2 cut(s)	107, 342
BstDEI	CTNAG	2 cut(s)	419, 425
BstF5I	GGATG	1 cut(s)	259
BstKTI	GATC	2 cut(s)	187, 201
BstMAI	GTCTC	2 cut(s)	57, 211
BstMBI	GATC	2 cut(s)	184, 198
BstNI	CCWGG	1 cut(s)	203
BstSCI	CCNGG	1 cut(s)	201
BstSFI	CTRYAG	1 cut(s)	494
BstV1I	GCAGC	2 cut(s)	87, 362
BstV2I	GAAGAC	1 cut(s)	185
BsuI	GTATCC	1 cut(s)	217
BsuRI	GGCC	1 cut(s)	309
BtsCI	GGATG	1 cut(s)	259
BtsI	GCAGTG	1 cut(s)	470
BtsIMutI	CAGTG	1 cut(s)	470
Cac8I	GCNNGC	2 cut(s)	107, 342
Cfr13I	GGNCC	1 cut(s)	272
Csp6I	GTAC	2 cut(s)	404, 476
CspCI	CAANNNNNGTGG	2 cut(s)	446, 481
CviAII	CATG	2 cut(s)	67, 412
CviJI	RGCY	6 cut(s)	115, 287, 309, 323, 365, 375
CviKI_1	RGCY	6 cut(s)	115, 287, 309, 323, 365, 375
CviQI	GTAC	2 cut(s)	404, 476
DdeI	CTNAG	2 cut(s)	419, 425
DpnI	GATC	2 cut(s)	186, 200
DpnII	GATC	2 cut(s)	184, 198
Eam1104I	CTCTTC	2 cut(s)	131, 363
EarI	CTCTTC	2 cut(s)	131, 363
Eco130I	CCWWGG	1 cut(s)	304
Eco147I	AGGCCT	1 cut(s)	309
Eco31I	GGTCTC	1 cut(s)	211
Eco47I	GGWCC	1 cut(s)	272
Eco57I	CTGAAG	1 cut(s)	387
EcoRI	GAATTC	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	201
EcoT14I	CCWWGG	1 cut(s)	304
ErhI	CCWWGG	1 cut(s)	304
FaeI	CATG	2 cut(s)	70, 415
FaiI	YATR	6 cut(s)	33, 68, 216, 326, 413, 496
FalI	AAGNNNNNCTT	2 cut(s)	384, 416
FatI	CATG	2 cut(s)	66, 411
FauI	CCCGC	1 cut(s)	434
Fnu4HI	GCNGC	2 cut(s)	76, 376
FokI	GGATG	1 cut(s)	266
Fsp4HI	GCNGC	2 cut(s)	76, 376
FspBI	CTAG	3 cut(s)	362, 480, 486
GluI	GCNGC	2 cut(s)	76, 376
HaeIII	GGCC	1 cut(s)	309
Hin1II	CATG	2 cut(s)	70, 415
HinfI	GANTC	4 cut(s)	121, 145, 169, 423
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	6 cut(s)	62, 98, 198, 391, 422, 428
Hpy188III	TCNNGA	1 cut(s)	149
Hpy8I	GTNNAC	1 cut(s)	49
HpyAV	CCTTC	1 cut(s)	386
HpyCH4V	TGCA	4 cut(s)	257, 340, 378, 463
HpyF3I	CTNAG	2 cut(s)	419, 425
Hsp92II	CATG	2 cut(s)	70, 415
Kzo9I	GATC	2 cut(s)	184, 198
LguI	GCTCTTC	1 cut(s)	131
LmnI	GCTCC	1 cut(s)	320
LpnPI	CCDG	5 cut(s)	23, 162, 188, 215, 326
Lsp1109I	GCAGC	2 cut(s)	87, 362
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	3 cut(s)	362, 480, 486
MalI	GATC	2 cut(s)	186, 200
MboI	GATC	2 cut(s)	184, 198
MboII	GAAGA	6 cut(s)	145, 148, 185, 304, 326, 380
MfeI	CAATTG	3 cut(s)	164, 177, 458
MluCI	AATT	6 cut(s)	27, 164, 177, 327, 355, 458
MlyI	GAGTC	3 cut(s)	115, 163, 417
MnlI	CCTC	1 cut(s)	35
MseI	TTAA	1 cut(s)	282
MspR9I	CCNGG	1 cut(s)	203
MunI	CAATTG	3 cut(s)	164, 177, 458
MvaI	CCWGG	1 cut(s)	203
NdeII	GATC	2 cut(s)	184, 198
NlaIII	CATG	2 cut(s)	70, 415
NlaIV	GGNNCC	1 cut(s)	322
PceI	AGGCCT	1 cut(s)	309
PciSI	GCTCTTC	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	145
PkrI	GCNGC	2 cut(s)	77, 377
PleI	GAGTC	3 cut(s)	115, 163, 417
PpsI	GAGTC	3 cut(s)	115, 163, 417
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	1 cut(s)	322
PspPI	GGNCC	1 cut(s)	272
RsaI	GTAC	2 cut(s)	405, 477
RsaNI	GTAC	2 cut(s)	404, 476
SapI	GCTCTTC	1 cut(s)	131
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	2 cut(s)	76, 376
Sau3AI	GATC	2 cut(s)	184, 198
Sau96I	GGNCC	1 cut(s)	272
SchI	GAGTC	3 cut(s)	115, 163, 417
ScrFI	CCNGG	1 cut(s)	203
SetI	ASST	6 cut(s)	12, 54, 117, 367, 377, 481
SfaNI	GCATC	1 cut(s)	244
SfcI	CTRYAG	1 cut(s)	494
SinI	GGWCC	1 cut(s)	272
Sse9I	AATT	6 cut(s)	27, 164, 177, 327, 355, 458
SseBI	AGGCCT	1 cut(s)	309
SsiI	CCGC	1 cut(s)	441
SspMI	CTAG	3 cut(s)	362, 480, 486
StuI	AGGCCT	1 cut(s)	309
StyD4I	CCNGG	1 cut(s)	201
StyI	CCWWGG	1 cut(s)	304
TasI	AATT	6 cut(s)	27, 164, 177, 327, 355, 458
TatI	WGTACW	1 cut(s)	403
TfiI	GAWTC	1 cut(s)	145
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	1 cut(s)	470
TseI	GCWGC	2 cut(s)	75, 375
TspDTI	ATGAA	3 cut(s)	20, 174, 268
TspRI	CASTG	1 cut(s)	470
VpaK11BI	GGWCC	1 cut(s)	272
XapI	RAATTY	1 cut(s)	27
XspI	CTAG	3 cut(s)	362, 480, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.