Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001057

Physical Location & Seq

Genomic Coordinates Reverse (-)

19014727 .. 19016106

Gene Structure 1380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g27320.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGAGAACATGTTGGGTCTGTTGAGAATTCACATCCAAAGAGGAGTGAACCTCGCCGTCCGAGACATGAGAAGCAGTGACCCTTATCTTATTGTCAAAATGGGCAAGCAGAAGCTAAAGACTCGTGTGGTGAAGAAGAGCCTGAATCCTGAGTGGAATGAGCAACTGACTCTTTCTATTGTTGATCCAGATCTTCCAATCCTGGTCTCTGTGTATGACAAGGATACATTTAGTTTTGATGACAAAATGGGGGATGCACAGTTTGAGATCGGTCCATTCTTCAAAGCCATGAAGACGGGTTTCCAAGGCCTCCAAGATCAAGATGGAGCCATAATCTCTAAAGTGCAGGTAAACAAGCAAAACTGTCTAGCCGAAGAGAGCTGCATTATCTACTCCAAAGGCAAACTGGTACAAAACATGGTTCTCAGACTCAGAAATGTCGAATGTGGGGAAGTGGAACTCCAATTGCAGTGGATAGATATTCCTAGTTCCAAGGGTCGACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0008047 GO:0008150 GO:0008289 GO:0009611 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0023051 GO:0023056 GO:0030234 GO:0030695 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0043900 GO:0043902 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0080134 GO:0098772 GO:1900424 GO:1900426 GO:1901000 GO:1901002 GO:1901419 GO:1901421 GO:1902477 GO:1902479 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00260 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00220 map00250 map00260 map00630 map00710 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Protein Analysis

169

Amino Acids

19.1

Weight (kDa)

8.4

Isoelectric Point (pI)

45.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	6 - 93	1.6e-22	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70810 AT5G37740 AT5G37740
fragaria_vesca	FvH4_1g27320 FvH4_1g28670 FvH4_1g28680 FvH4_1g28690 FvH4_2g18820
malus_domestica	MD09G1278700.v1.1 MD09G1278800.v1.1 MD09G1278900.v1.1 MD09G1279000.v1.1 MD17G1260900.v1.1
prunus_persica	Prupe.3G162700_v2.0.a1 Prupe.3G162800_v2.0.a1 Prupe.3G162900_v2.0.a1 Prupe.3G162900_v2.0.a1
pyrus_communis	pycom09g17860 pycom09g17870 pycom09g17880 pycom09g17890 pycom17g26160
rosa_chinensis	RchiOBHm_Chr3g0492961 RchiOBHm_Chr3g0492971 RchiOBHm_Chr3g0492991
rosa_laevigata	RLG00000022734 RLG00000022736 RLG00000022737 RLG00000022739 RLG00000022740 RLG00000022741
rosa_multiflora	Rmu_co8406109.1_g000001 Rmu_sc0000395.1_g000015 Rmu_sc0000395.1_g000023 Rmu_sc0000395.1_g000029 Rmu_sc0008956.1_g000004 Rmu_sc0016690.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391990 Rroxscaffold_6G00392000 Rroxscaffold_6G00392010
rosa_rugosa	Rorug03G0256700 Rorug03G0257800 Rorug03G0258000 Rorug03G0258400 Rorug03G0258500 Rorug03G0258500
rosa_samantha	Rh3AG306200 Rh3AG307300 Rh3AG307500 Rh3BG342700 Rh3BG342800 Rh3BG342900 Rh3CG340000 Rh3CG340200 Rh3DG342000 Rh3DG342200 Rh3DG342400
rosa_wichuraiana	Rw3G027020 Rw3G027030 Rw3G027040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	337
AccI	GTMKAC	1 cut(s)	499
AclWI	GGATC	1 cut(s)	179
AcsI	RAATTY	1 cut(s)	27
AfaI	GTAC	1 cut(s)	411
AflIII	ACRYGT	1 cut(s)	9
AgsI	TTSAA	1 cut(s)	283
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	2 cut(s)	115, 381
AluI	AGCT	2 cut(s)	115, 381
Alw26I	GTCTC	2 cut(s)	57, 211
AlwI	GGATC	1 cut(s)	179
AoxI	GGCC	1 cut(s)	307
ApeKI	GCWGC	1 cut(s)	381
ApoI	RAATTY	1 cut(s)	27
AspS9I	GGNCC	1 cut(s)	272
AsuHPI	GGTGA	1 cut(s)	142
AvaII	GGWCC	1 cut(s)	272
BauI	CACGAG	1 cut(s)	123
BbsI	GAAGAC	1 cut(s)	299
BbvI	GCAGC	1 cut(s)	368
BccI	CCATC	1 cut(s)	317
BceAI	ACGGC	1 cut(s)	41
BciT130I	CCWGG	1 cut(s)	203
BciVI	GTATCC	1 cut(s)	217
BcoDI	GTCTC	2 cut(s)	57, 211
BfaI	CTAG	2 cut(s)	368, 486
BfuAI	ACCTGC	1 cut(s)	337
BfuI	GTATCC	1 cut(s)	217
BglII	AGATCT	1 cut(s)	190
BisI	GCNGC	1 cut(s)	382
BlsI	GCNGC	1 cut(s)	383
Bme1390I	CCNGG	1 cut(s)	203
Bme18I	GGWCC	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	272
BmiI	GGNNCC	1 cut(s)	328
BmrFI	CCNGG	1 cut(s)	203
BmsI	GCATC	1 cut(s)	244
BpiI	GAAGAC	1 cut(s)	299
BplI	GAGNNNNNCTC	2 cut(s)	36, 68
BsaBI	GATNNNNATC	1 cut(s)	189
BsaI	GGTCTC	1 cut(s)	211
BsaJI	CCNNGG	2 cut(s)	304, 492
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	411
Bse8I	GATNNNNATC	1 cut(s)	189
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	2 cut(s)	304, 492
BseGI	GGATG	2 cut(s)	33, 259
BseJI	GATNNNNATC	1 cut(s)	189
BseMII	CTCAG	3 cut(s)	141, 439, 445
BseNI	ACTGG	1 cut(s)	411
BseRI	GAGGAG	1 cut(s)	57
BseXI	GCAGC	1 cut(s)	368
BsgI	GTGCAG	1 cut(s)	365
BshFI	GGCC	1 cut(s)	309
BsmAI	GTCTC	2 cut(s)	57, 211
BsnI	GGCC	1 cut(s)	309
Bso31I	GGTCTC	1 cut(s)	211
Bsp143I	GATC	4 cut(s)	184, 190, 267, 316
BspANI	GGCC	1 cut(s)	309
BspCNI	CTCAG	3 cut(s)	142, 438, 444
BspLI	GGNNCC	1 cut(s)	328
BspMI	ACCTGC	1 cut(s)	337
BspPI	GGATC	1 cut(s)	179
BspQI	GCTCTTC	1 cut(s)	131
BspTNI	GGTCTC	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	411
BssECI	CCNNGG	2 cut(s)	304, 492
BssMI	GATC	4 cut(s)	184, 190, 267, 316
BssSI	CACGAG	1 cut(s)	123
BssT1I	CCWWGG	2 cut(s)	304, 492
Bst2BI	CACGAG	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	203
Bst4CI	ACNGT	2 cut(s)	261, 365
Bst6I	CTCTTC	2 cut(s)	131, 369
BstC8I	GCNNGC	1 cut(s)	107
BstDEI	CTNAG	3 cut(s)	150, 425, 431
BstF5I	GGATG	2 cut(s)	33, 259
BstKTI	GATC	4 cut(s)	187, 193, 270, 319
BstMAI	GTCTC	2 cut(s)	57, 211
BstMBI	GATC	4 cut(s)	184, 190, 267, 316
BstNI	CCWGG	1 cut(s)	203
BstNSI	RCATGY	1 cut(s)	13
BstSCI	CCNGG	1 cut(s)	201
BstV1I	GCAGC	1 cut(s)	368
BstV2I	GAAGAC	1 cut(s)	299
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
BsuI	GTATCC	1 cut(s)	217
BsuRI	GGCC	1 cut(s)	309
BtsCI	GGATG	2 cut(s)	33, 259
BtsI	GCAGTG	2 cut(s)	82, 476
BtsIMutI	CAGTG	2 cut(s)	82, 476
BveI	ACCTGC	1 cut(s)	337
Cac8I	GCNNGC	1 cut(s)	107
Cfr13I	GGNCC	1 cut(s)	272
Csp6I	GTAC	1 cut(s)	410
CspCI	CAANNNNNGTGG	2 cut(s)	452, 487
CviAII	CATG	4 cut(s)	10, 67, 289, 418
CviJI	RGCY	7 cut(s)	115, 141, 287, 309, 329, 371, 381
CviKI_1	RGCY	7 cut(s)	115, 141, 287, 309, 329, 371, 381
CviQI	GTAC	1 cut(s)	410
DdeI	CTNAG	3 cut(s)	150, 425, 431
DpnI	GATC	4 cut(s)	186, 192, 269, 318
DpnII	GATC	4 cut(s)	184, 190, 267, 316
Eam1104I	CTCTTC	2 cut(s)	131, 369
EarI	CTCTTC	2 cut(s)	131, 369
Eco130I	CCWWGG	2 cut(s)	304, 492
Eco147I	AGGCCT	1 cut(s)	309
Eco31I	GGTCTC	1 cut(s)	211
Eco47I	GGWCC	1 cut(s)	272
EcoRI	GAATTC	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	201
EcoT14I	CCWWGG	2 cut(s)	304, 492
ErhI	CCWWGG	2 cut(s)	304, 492
FaeI	CATG	4 cut(s)	13, 70, 292, 421
FaiI	YATR	7 cut(s)	11, 68, 216, 290, 332, 419, 505
FatI	CATG	4 cut(s)	9, 66, 288, 417
FblI	GTMKAC	1 cut(s)	499
Fnu4HI	GCNGC	1 cut(s)	382
FokI	GGATG	2 cut(s)	20, 266
Fsp4HI	GCNGC	1 cut(s)	382
FspBI	CTAG	2 cut(s)	368, 486
GluI	GCNGC	1 cut(s)	382
HaeIII	GGCC	1 cut(s)	309
Hin1II	CATG	4 cut(s)	13, 70, 292, 421
HincII	GTYRAC	1 cut(s)	500
HindII	GTYRAC	1 cut(s)	500
HinfI	GANTC	4 cut(s)	121, 145, 169, 429
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	3 cut(s)	49, 352, 500
Hpy188I	TCNGA	3 cut(s)	62, 428, 434
Hpy188III	TCNNGA	3 cut(s)	149, 188, 320
Hpy8I	GTNNAC	3 cut(s)	49, 352, 500
HpyCH4III	ACNGT	2 cut(s)	261, 365
HpyCH4V	TGCA	4 cut(s)	257, 346, 384, 469
HpyF3I	CTNAG	3 cut(s)	150, 425, 431
Hsp92II	CATG	4 cut(s)	13, 70, 292, 421
Kzo9I	GATC	4 cut(s)	184, 190, 267, 316
LguI	GCTCTTC	1 cut(s)	131
LmnI	GCTCC	1 cut(s)	326
LpnPI	CCDG	7 cut(s)	155, 162, 188, 201, 215, 332, 392
Lsp1109I	GCAGC	1 cut(s)	368
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	2 cut(s)	368, 486
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	4 cut(s)	186, 192, 269, 318
MboI	GATC	4 cut(s)	184, 190, 267, 316
MboII	GAAGA	6 cut(s)	145, 148, 185, 271, 304, 386
MfeI	CAATTG	1 cut(s)	464
MflI	RGATCY	1 cut(s)	190
MluCI	AATT	2 cut(s)	27, 464
MlyI	GAGTC	3 cut(s)	115, 163, 423
MnlI	CCTC	3 cut(s)	35, 62, 320
MspR9I	CCNGG	1 cut(s)	203
MunI	CAATTG	1 cut(s)	464
MvaI	CCWGG	1 cut(s)	203
NdeII	GATC	4 cut(s)	184, 190, 267, 316
NlaIII	CATG	4 cut(s)	13, 70, 292, 421
NlaIV	GGNNCC	1 cut(s)	328
NmuCI	GTSAC	1 cut(s)	77
NspI	RCATGY	1 cut(s)	13
PceI	AGGCCT	1 cut(s)	309
PciI	ACATGT	1 cut(s)	9
PciSI	GCTCTTC	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	145
PkrI	GCNGC	1 cut(s)	383
PleI	GAGTC	3 cut(s)	115, 163, 423
PpsI	GAGTC	3 cut(s)	115, 163, 423
PscI	ACATGT	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	1 cut(s)	328
PspPI	GGNCC	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	190
RsaI	GTAC	1 cut(s)	411
RsaNI	GTAC	1 cut(s)	410
SalI	GTCGAC	1 cut(s)	498
SapI	GCTCTTC	1 cut(s)	131
SatI	GCNGC	1 cut(s)	382
Sau3AI	GATC	4 cut(s)	184, 190, 267, 316
Sau96I	GGNCC	1 cut(s)	272
SchI	GAGTC	3 cut(s)	115, 163, 423
ScrFI	CCNGG	1 cut(s)	203
SetI	ASST	4 cut(s)	54, 117, 351, 383
SfaNI	GCATC	1 cut(s)	244
SinI	GGWCC	1 cut(s)	272
Sse9I	AATT	2 cut(s)	27, 464
SseBI	AGGCCT	1 cut(s)	309
SspMI	CTAG	2 cut(s)	368, 486
StuI	AGGCCT	1 cut(s)	309
StyD4I	CCNGG	1 cut(s)	201
StyI	CCWWGG	2 cut(s)	304, 492
TaaI	ACNGT	2 cut(s)	261, 365
TaqI	TCGA	2 cut(s)	441, 499
TaqII	GACCGA	1 cut(s)	260
TasI	AATT	2 cut(s)	27, 464
TfiI	GAWTC	1 cut(s)	145
TscAI	CASTG	2 cut(s)	82, 476
TseFI	GTSAC	1 cut(s)	77
TseI	GCWGC	1 cut(s)	381
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	1 cut(s)	305
TspRI	CASTG	2 cut(s)	82, 476
VpaK11BI	GGWCC	1 cut(s)	272
XapI	RAATTY	1 cut(s)	27
XceI	RCATGY	1 cut(s)	13
XcmI	CCANNNNNNNNNTGG	2 cut(s)	320, 403
XmiI	GTMKAC	1 cut(s)	499
XspI	CTAG	2 cut(s)	368, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.