Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001057

Physical Location & Seq

Genomic Coordinates Reverse (-)

20986952 .. 20988447

Gene Structure 1496 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g28690.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGAGAACCTGTTGGGTCTTTTACGGATTCACATTCAAAGAGGAGTCGATCTGGCCGTAAGAGACATGACCAGCAGTGACCCTTACATCATCGTCAAAATGGGCAAGCAGAAGTTGAAAACTCGCGTTGTAAAGCGTAATGTGAACCCTGAGTGGAACGAAAAATTGACTCTAACCGTTTCAGACCCAAATATTCCAGTCAAGCTCTTTGTGTATGACAAAGATACTTTCACTTTTGATGACAAAATGGGAGATGCAGAGTTTGAGATTGCTACATTTGTTAAAGTATTGCAGATGCGCTTGGAAGGTCTCCCAGAGGGAACCATAATTGCTAGAGTTCAACCAACTAGGCAAAACTGCCTTGCAGAAGAGAGCTGTATTATCTGGTCCAACGGCAAAGTTGTGCAAAACATGGTTCTTAGACTCAGAAATGTCGAGCGTGGTGAAGTAGAACTCCAATTGCAGTGGATTCATGTTCCTAAGGGTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0008047 GO:0008150 GO:0008289 GO:0009611 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0023051 GO:0023056 GO:0030234 GO:0030695 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0043900 GO:0043902 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0080134 GO:0098772 GO:1900424 GO:1900426 GO:1901000 GO:1901002 GO:1901419 GO:1901421 GO:1902477 GO:1902479 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

164

Amino Acids

18.76

Weight (kDa)

8.56

Isoelectric Point (pI)

43.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	6 - 93	9.1e-22	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70810 AT5G37740 AT5G37740
fragaria_vesca	FvH4_1g27320 FvH4_1g28670 FvH4_1g28680 FvH4_1g28690 FvH4_2g18820
malus_domestica	MD09G1278700.v1.1 MD09G1278800.v1.1 MD09G1278900.v1.1 MD09G1279000.v1.1 MD17G1260900.v1.1
prunus_persica	Prupe.3G162700_v2.0.a1 Prupe.3G162800_v2.0.a1 Prupe.3G162900_v2.0.a1 Prupe.3G162900_v2.0.a1
pyrus_communis	pycom09g17860 pycom09g17870 pycom09g17880 pycom09g17890 pycom17g26160
rosa_chinensis	RchiOBHm_Chr3g0492961 RchiOBHm_Chr3g0492971 RchiOBHm_Chr3g0492991
rosa_laevigata	RLG00000022734 RLG00000022736 RLG00000022737 RLG00000022739 RLG00000022740 RLG00000022741
rosa_multiflora	Rmu_co8406109.1_g000001 Rmu_sc0000395.1_g000015 Rmu_sc0000395.1_g000023 Rmu_sc0000395.1_g000029 Rmu_sc0008956.1_g000004 Rmu_sc0016690.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391990 Rroxscaffold_6G00392000 Rroxscaffold_6G00392010
rosa_rugosa	Rorug03G0256700 Rorug03G0257800 Rorug03G0258000 Rorug03G0258400 Rorug03G0258500 Rorug03G0258500
rosa_samantha	Rh3AG306200 Rh3AG307300 Rh3AG307500 Rh3BG342700 Rh3BG342800 Rh3BG342900 Rh3CG340000 Rh3CG340200 Rh3DG342000 Rh3DG342200 Rh3DG342400
rosa_wichuraiana	Rw3G027020 Rw3G027030 Rw3G027040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	126
AcoI	YGGCCR	1 cut(s)	54
AgsI	TTSAA	3 cut(s)	38, 118, 341
AluBI	AGCT	2 cut(s)	205, 375
AluI	AGCT	2 cut(s)	205, 375
Alw26I	GTCTC	2 cut(s)	57, 314
AoxI	GGCC	1 cut(s)	54
AspLEI	GCGC	1 cut(s)	300
AspS9I	GGNCC	1 cut(s)	387
AsuHPI	GGTGA	1 cut(s)	455
AvaII	GGWCC	1 cut(s)	387
AxyI	CCTNAGG	1 cut(s)	480
BceAI	ACGGC	2 cut(s)	41, 409
BcoDI	GTCTC	2 cut(s)	57, 314
BfaI	CTAG	2 cut(s)	333, 348
Bme18I	GGWCC	1 cut(s)	387
BmgT120I	GGNCC	1 cut(s)	387
BmiI	GGNNCC	1 cut(s)	322
BmsI	GCATC	2 cut(s)	244, 285
BsaI	GGTCTC	1 cut(s)	314
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	197
Bse21I	CCTNAGG	1 cut(s)	480
BseMII	CTCAG	2 cut(s)	141, 439
BseNI	ACTGG	1 cut(s)	197
BseRI	GAGGAG	1 cut(s)	57
Bsh1236I	CGCG	1 cut(s)	126
BshFI	GGCC	1 cut(s)	56
BsmAI	GTCTC	2 cut(s)	57, 314
BsnI	GGCC	1 cut(s)	56
Bso31I	GGTCTC	1 cut(s)	314
Bsp143I	GATC	1 cut(s)	49
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	2 cut(s)	142, 438
BspFNI	CGCG	1 cut(s)	126
BspLI	GGNNCC	1 cut(s)	322
BspTNI	GGTCTC	1 cut(s)	314
BsrI	ACTGG	1 cut(s)	197
BssMI	GATC	1 cut(s)	49
Bst4CI	ACNGT	1 cut(s)	178
Bst6I	CTCTTC	1 cut(s)	363
BstC8I	GCNNGC	1 cut(s)	107
BstDEI	CTNAG	4 cut(s)	150, 419, 425, 480
BstFNI	CGCG	1 cut(s)	126
BstHHI	GCGC	1 cut(s)	300
BstKTI	GATC	1 cut(s)	52
BstMAI	GTCTC	2 cut(s)	57, 314
BstMBI	GATC	1 cut(s)	49
BstUI	CGCG	1 cut(s)	126
Bsu36I	CCTNAGG	1 cut(s)	480
BsuRI	GGCC	1 cut(s)	56
BtsI	GCAGTG	2 cut(s)	82, 470
BtsIMutI	CAGTG	2 cut(s)	82, 470
Cac8I	GCNNGC	1 cut(s)	107
CfoI	GCGC	1 cut(s)	300
Cfr13I	GGNCC	1 cut(s)	387
CspCI	CAANNNNNGTGG	2 cut(s)	446, 481
CviAII	CATG	3 cut(s)	67, 412, 473
CviJI	RGCY	3 cut(s)	56, 205, 375
CviKI_1	RGCY	3 cut(s)	56, 205, 375
DdeI	CTNAG	4 cut(s)	150, 419, 425, 480
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
EaeI	YGGCCR	1 cut(s)	54
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
Eco31I	GGTCTC	1 cut(s)	314
Eco47I	GGWCC	1 cut(s)	387
Eco81I	CCTNAGG	1 cut(s)	480
FaeI	CATG	3 cut(s)	70, 415, 476
FaiI	YATR	5 cut(s)	68, 216, 326, 413, 474
FatI	CATG	3 cut(s)	66, 411, 472
FspBI	CTAG	2 cut(s)	333, 348
GlaI	GCGC	1 cut(s)	299
HaeIII	GGCC	1 cut(s)	56
HhaI	GCGC	1 cut(s)	300
Hin1II	CATG	3 cut(s)	70, 415, 476
Hin6I	GCGC	1 cut(s)	298
HinP1I	GCGC	1 cut(s)	298
HinfI	GANTC	5 cut(s)	28, 45, 169, 423, 469
HphI	GGTGA	1 cut(s)	455
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	2 cut(s)	184, 428
Hpy8I	GTNNAC	1 cut(s)	145
HpyAV	CCTTC	1 cut(s)	299
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4V	TGCA	5 cut(s)	257, 292, 365, 406, 463
HpyF3I	CTNAG	4 cut(s)	150, 419, 425, 480
Hsp92II	CATG	3 cut(s)	70, 415, 476
HspAI	GCGC	1 cut(s)	298
Kzo9I	GATC	1 cut(s)	49
LpnPI	CCDG	7 cut(s)	23, 38, 85, 162, 210, 327, 370
LweI	GCATC	2 cut(s)	244, 285
MaeI	CTAG	2 cut(s)	333, 348
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MboII	GAAGA	1 cut(s)	380
MfeI	CAATTG	1 cut(s)	458
MluCI	AATT	3 cut(s)	164, 327, 458
MlyI	GAGTC	3 cut(s)	54, 163, 417
MmeI	TCCRAC	1 cut(s)	414
MnlI	CCTC	2 cut(s)	35, 310
MseI	TTAA	1 cut(s)	282
MunI	CAATTG	1 cut(s)	458
MvnI	CGCG	1 cut(s)	126
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	3 cut(s)	70, 415, 476
NlaIV	GGNNCC	1 cut(s)	322
NmuCI	GTSAC	1 cut(s)	77
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PfeI	GAWTC	2 cut(s)	28, 469
PleI	GAGTC	3 cut(s)	53, 163, 417
PpsI	GAGTC	3 cut(s)	53, 163, 417
PspN4I	GGNNCC	1 cut(s)	322
PspPI	GGNCC	1 cut(s)	387
SaqAI	TTAA	1 cut(s)	282
Sau3AI	GATC	1 cut(s)	49
Sau96I	GGNCC	1 cut(s)	387
SchI	GAGTC	3 cut(s)	54, 163, 417
SetI	ASST	4 cut(s)	12, 207, 310, 377
SfaNI	GCATC	2 cut(s)	244, 285
SinI	GGWCC	1 cut(s)	387
Sse9I	AATT	3 cut(s)	164, 327, 458
SspI	AATATT	1 cut(s)	193
SspMI	CTAG	2 cut(s)	333, 348
TaaI	ACNGT	1 cut(s)	178
TaqI	TCGA	2 cut(s)	48, 435
TasI	AATT	3 cut(s)	164, 327, 458
TfiI	GAWTC	2 cut(s)	28, 469
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	2 cut(s)	82, 470
TseFI	GTSAC	1 cut(s)	77
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	1 cut(s)	461
TspGWI	ACGGA	1 cut(s)	40
TspRI	CASTG	2 cut(s)	82, 470
VpaK11BI	GGWCC	1 cut(s)	387
XspI	CTAG	2 cut(s)	333, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.