Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001057

Physical Location & Seq

Genomic Coordinates Reverse (-)

38038346 .. 38044191

Gene Structure 5846 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG306200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGAGAACATGTTGGGTCTGTTGAGAATTCATATCCAAAGAGGAGTGAACCTTGCCATCAGAGACATGAGAAGCAGCGACCCTTATCTCATTGTCAGAATGGGCAAGCAGAAGCTAAAGACTCGTGTAGTGAAGAAGAGCGTGAATCCTGAGTGGAATGAACAATTGACTCTTTCAATTGCTGATCCAAGTCTTCCAATCCTGGTCTCTGTGTATGACAAGGATACATTTAGTTTTGATGACAAAATGGGGGATGCAGAGTTTGAGTTTGGTCCATTCATTAAAGCCTTGAAGATGGGTTTCCATGTATTGTCATCAACATATGGGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0008047 GO:0008150 GO:0008289 GO:0009611 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0023051 GO:0023056 GO:0030234 GO:0030695 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0043900 GO:0043902 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0080134 GO:0098772 GO:1900424 GO:1900426 GO:1901000 GO:1901002 GO:1901419 GO:1901421 GO:1902477 GO:1902479 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00260 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00220 map00250 map00260 map00630 map00710 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Protein Analysis

110

Amino Acids

12.57

Weight (kDa)

8.96

Isoelectric Point (pI)

35.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	6 - 92	2e-22	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70810 AT5G37740 AT5G37740
fragaria_vesca	FvH4_1g27320 FvH4_1g28670 FvH4_1g28680 FvH4_1g28690 FvH4_2g18820
malus_domestica	MD09G1278700.v1.1 MD09G1278800.v1.1 MD09G1278900.v1.1 MD09G1279000.v1.1 MD17G1260900.v1.1
prunus_persica	Prupe.3G162700_v2.0.a1 Prupe.3G162800_v2.0.a1 Prupe.3G162900_v2.0.a1 Prupe.3G162900_v2.0.a1
pyrus_communis	pycom09g17860 pycom09g17870 pycom09g17880 pycom09g17890 pycom17g26160
rosa_chinensis	RchiOBHm_Chr3g0492961 RchiOBHm_Chr3g0492971 RchiOBHm_Chr3g0492991
rosa_laevigata	RLG00000022734 RLG00000022736 RLG00000022737 RLG00000022739 RLG00000022740 RLG00000022741
rosa_multiflora	Rmu_co8406109.1_g000001 Rmu_sc0000395.1_g000015 Rmu_sc0000395.1_g000023 Rmu_sc0000395.1_g000029 Rmu_sc0008956.1_g000004 Rmu_sc0016690.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391990 Rroxscaffold_6G00392000 Rroxscaffold_6G00392010
rosa_rugosa	Rorug03G0256700 Rorug03G0257800 Rorug03G0258000 Rorug03G0258400 Rorug03G0258500 Rorug03G0258500
rosa_samantha	Rh3AG306200 Rh3AG307300 Rh3AG307500 Rh3BG342700 Rh3BG342800 Rh3BG342900 Rh3CG340000 Rh3CG340200 Rh3DG342000 Rh3DG342200 Rh3DG342400
rosa_wichuraiana	Rw3G027020 Rw3G027030 Rw3G027040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	179
AcsI	RAATTY	1 cut(s)	27
AflIII	ACRYGT	1 cut(s)	9
AgsI	TTSAA	2 cut(s)	177, 292
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	1 cut(s)	115
AluI	AGCT	1 cut(s)	115
Alw26I	GTCTC	2 cut(s)	57, 211
AlwI	GGATC	1 cut(s)	179
ApeKI	GCWGC	1 cut(s)	75
ApoI	RAATTY	1 cut(s)	27
AspS9I	GGNCC	1 cut(s)	272
AvaII	GGWCC	1 cut(s)	272
BauI	CACGAG	1 cut(s)	123
BbsI	GAAGAC	1 cut(s)	185
BbvI	GCAGC	1 cut(s)	87
BccI	CCATC	2 cut(s)	65, 289
BciT130I	CCWGG	1 cut(s)	203
BciVI	GTATCC	1 cut(s)	217
BcoDI	GTCTC	2 cut(s)	57, 211
BfuI	GTATCC	1 cut(s)	217
BisI	GCNGC	1 cut(s)	76
BlsI	GCNGC	1 cut(s)	77
Bme1390I	CCNGG	1 cut(s)	203
Bme18I	GGWCC	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	272
BmrFI	CCNGG	1 cut(s)	203
BmsI	GCATC	1 cut(s)	244
BpiI	GAAGAC	1 cut(s)	185
BsaI	GGTCTC	1 cut(s)	211
BsaXI	ACNNNNNCTCC	1 cut(s)	26
BseBI	CCWGG	1 cut(s)	203
BseGI	GGATG	2 cut(s)	259, 333
BseMII	CTCAG	1 cut(s)	141
BseRI	GAGGAG	1 cut(s)	57
BseXI	GCAGC	1 cut(s)	87
BsmAI	GTCTC	2 cut(s)	57, 211
Bso31I	GGTCTC	1 cut(s)	211
Bsp143I	GATC	1 cut(s)	184
BspCNI	CTCAG	1 cut(s)	142
BspPI	GGATC	1 cut(s)	179
BspQI	GCTCTTC	1 cut(s)	131
BspTNI	GGTCTC	1 cut(s)	211
BssMI	GATC	1 cut(s)	184
BssSI	CACGAG	1 cut(s)	123
Bst2BI	CACGAG	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	203
Bst6I	CTCTTC	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	107
BstDEI	CTNAG	1 cut(s)	150
BstF5I	GGATG	2 cut(s)	259, 333
BstKTI	GATC	1 cut(s)	187
BstMAI	GTCTC	2 cut(s)	57, 211
BstMBI	GATC	1 cut(s)	184
BstNI	CCWGG	1 cut(s)	203
BstNSI	RCATGY	1 cut(s)	13
BstSCI	CCNGG	1 cut(s)	201
BstV1I	GCAGC	1 cut(s)	87
BstV2I	GAAGAC	1 cut(s)	185
BsuI	GTATCC	1 cut(s)	217
BtsCI	GGATG	2 cut(s)	259, 333
Cac8I	GCNNGC	1 cut(s)	107
Cfr13I	GGNCC	1 cut(s)	272
CviAII	CATG	3 cut(s)	10, 67, 305
CviJI	RGCY	2 cut(s)	115, 287
CviKI_1	RGCY	2 cut(s)	115, 287
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
Eco31I	GGTCTC	1 cut(s)	211
Eco47I	GGWCC	1 cut(s)	272
EcoRI	GAATTC	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	201
FaeI	CATG	3 cut(s)	13, 70, 308
FaiI	YATR	7 cut(s)	11, 33, 68, 216, 306, 322, 324
FatI	CATG	3 cut(s)	9, 66, 304
FauNDI	CATATG	1 cut(s)	322
Fnu4HI	GCNGC	1 cut(s)	76
FokI	GGATG	1 cut(s)	266
Fsp4HI	GCNGC	1 cut(s)	76
GluI	GCNGC	1 cut(s)	76
Hin1II	CATG	3 cut(s)	13, 70, 308
HinfI	GANTC	3 cut(s)	121, 145, 169
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	2 cut(s)	62, 98
Hpy188III	TCNNGA	1 cut(s)	149
Hpy8I	GTNNAC	1 cut(s)	49
HpyCH4V	TGCA	1 cut(s)	257
HpyF3I	CTNAG	1 cut(s)	150
Hsp92II	CATG	3 cut(s)	13, 70, 308
Kzo9I	GATC	1 cut(s)	184
LguI	GCTCTTC	1 cut(s)	131
LpnPI	CCDG	3 cut(s)	162, 188, 215
Lsp1109I	GCAGC	1 cut(s)	87
LweI	GCATC	1 cut(s)	244
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MboII	GAAGA	4 cut(s)	145, 148, 185, 304
MfeI	CAATTG	2 cut(s)	164, 177
MluCI	AATT	3 cut(s)	27, 164, 177
MlyI	GAGTC	2 cut(s)	115, 163
MnlI	CCTC	1 cut(s)	35
MseI	TTAA	1 cut(s)	282
MspR9I	CCNGG	1 cut(s)	203
MunI	CAATTG	2 cut(s)	164, 177
MvaI	CCWGG	1 cut(s)	203
NdeI	CATATG	1 cut(s)	322
NdeII	GATC	1 cut(s)	184
NlaIII	CATG	3 cut(s)	13, 70, 308
NspI	RCATGY	1 cut(s)	13
PciI	ACATGT	1 cut(s)	9
PciSI	GCTCTTC	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	145
PkrI	GCNGC	1 cut(s)	77
PleI	GAGTC	2 cut(s)	115, 163
PpsI	GAGTC	2 cut(s)	115, 163
PscI	ACATGT	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
PspPI	GGNCC	1 cut(s)	272
SapI	GCTCTTC	1 cut(s)	131
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	1 cut(s)	76
Sau3AI	GATC	1 cut(s)	184
Sau96I	GGNCC	1 cut(s)	272
SchI	GAGTC	2 cut(s)	115, 163
ScrFI	CCNGG	1 cut(s)	203
SetI	ASST	2 cut(s)	54, 117
SfaNI	GCATC	1 cut(s)	244
SinI	GGWCC	1 cut(s)	272
Sse9I	AATT	3 cut(s)	27, 164, 177
StyD4I	CCNGG	1 cut(s)	201
TasI	AATT	3 cut(s)	27, 164, 177
TfiI	GAWTC	1 cut(s)	145
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TseI	GCWGC	1 cut(s)	75
TspDTI	ATGAA	3 cut(s)	20, 174, 268
VpaK11BI	GGWCC	1 cut(s)	272
XapI	RAATTY	1 cut(s)	27
XceI	RCATGY	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.