Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0001057

Physical Location & Seq

Genomic Coordinates Forward (+)

18407978 .. 18410247

Gene Structure 2270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g17880.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGAGAACGTGATGGGTCTGCTGAGAATTCACATCCAAAAAGGAGTGAACCTTGCCGTTCGAGACATGAGAAGCAGTGATCCTTACGTAGTTGTCAACATGGGCAAGCAGAAACTCAAGACTCGGGTGGTGAAGAAGAATGTGAATCCGGAGTGGAACGAAAAAGTGACTCTTTCAGTTGCAGACGCAATTTTTCCAATCAGGCTTTCTGTGTATGACAAAGATACATTTAGTTTCGATGACAAAATGGGGGATGCAGAGTTTGAGATTGGTACATTTATTAAAGTCTTGAGGATGGGATTGGAAGGCCTCCCAGATGGAACCATAATTACAAAAGTACAACCAAGTAGAAAAAACTGCCTTGCTGAAGAGAGCTACATTGTTTGGTCCAAAGGCAAAGTTGTCCAAAACATGGTCCTCAGACTGAGGAATGTGGAGTGCGGGGAAGTGGAACTGCAGTTGCAGTGGATTAATGTTCCTAGTTCTAGAGGTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0008047 GO:0008150 GO:0008289 GO:0009611 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0023051 GO:0023056 GO:0030234 GO:0030695 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0043900 GO:0043902 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0080134 GO:0098772 GO:1900424 GO:1900426 GO:1901000 GO:1901002 GO:1901419 GO:1901421 GO:1902477 GO:1902479 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

166

Amino Acids

18.74

Weight (kDa)

9.1

Isoelectric Point (pI)

40.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70810 AT5G37740 AT5G37740
fragaria_vesca	FvH4_1g27320 FvH4_1g28670 FvH4_1g28680 FvH4_1g28690 FvH4_2g18820
malus_domestica	MD09G1278700.v1.1 MD09G1278800.v1.1 MD09G1278900.v1.1 MD09G1279000.v1.1 MD17G1260900.v1.1
prunus_persica	Prupe.3G162700_v2.0.a1 Prupe.3G162800_v2.0.a1 Prupe.3G162900_v2.0.a1 Prupe.3G162900_v2.0.a1
pyrus_communis	pycom09g17860 pycom09g17870 pycom09g17880 pycom09g17890 pycom17g26160
rosa_chinensis	RchiOBHm_Chr3g0492961 RchiOBHm_Chr3g0492971 RchiOBHm_Chr3g0492991
rosa_laevigata	RLG00000022734 RLG00000022736 RLG00000022737 RLG00000022739 RLG00000022740 RLG00000022741
rosa_multiflora	Rmu_co8406109.1_g000001 Rmu_sc0000395.1_g000015 Rmu_sc0000395.1_g000023 Rmu_sc0000395.1_g000029 Rmu_sc0008956.1_g000004 Rmu_sc0016690.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391990 Rroxscaffold_6G00392000 Rroxscaffold_6G00392010
rosa_rugosa	Rorug03G0256700 Rorug03G0257800 Rorug03G0258000 Rorug03G0258400 Rorug03G0258500 Rorug03G0258500
rosa_samantha	Rh3AG306200 Rh3AG307300 Rh3AG307500 Rh3BG342700 Rh3BG342800 Rh3BG342900 Rh3CG340000 Rh3CG340200 Rh3DG342000 Rh3DG342200 Rh3DG342400
rosa_wichuraiana	Rw3G027020 Rw3G027030 Rw3G027040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	412
AccIII	TCCGGA	1 cut(s)	148
AciI	CCGC	1 cut(s)	441
AclWI	GGATC	1 cut(s)	74
AcsI	RAATTY	1 cut(s)	27
AcuI	CTGAAG	1 cut(s)	387
AfaI	GTAC	2 cut(s)	274, 339
AfiI	CCNNNNNNNGG	1 cut(s)	412
AjuI	GAANNNNNNNTTGG	2 cut(s)	190, 222
AluBI	AGCT	1 cut(s)	375
AluI	AGCT	1 cut(s)	375
Alw26I	GTCTC	1 cut(s)	57
AlwI	GGATC	1 cut(s)	74
Ama87I	CYCGRG	1 cut(s)	123
Aor13HI	TCCGGA	1 cut(s)	148
AoxI	GGCC	1 cut(s)	307
ApoI	RAATTY	1 cut(s)	27
AseI	ATTAAT	1 cut(s)	471
AspS9I	GGNCC	2 cut(s)	387, 415
AsuHPI	GGTGA	1 cut(s)	142
AvaI	CYCGRG	1 cut(s)	123
AvaII	GGWCC	2 cut(s)	387, 415
BccI	CCATC	3 cut(s)	7, 289, 311
BceAI	ACGGC	1 cut(s)	41
BcoDI	GTCTC	1 cut(s)	57
BfaI	CTAG	2 cut(s)	480, 486
BfmI	CTRYAG	2 cut(s)	455, 494
Bme18I	GGWCC	2 cut(s)	387, 415
BmeT110I	CYCGRG	1 cut(s)	123
BmgT120I	GGNCC	2 cut(s)	387, 415
BmiI	GGNNCC	1 cut(s)	322
BmsI	GCATC	1 cut(s)	244
BpuEI	CTTGAG	2 cut(s)	101, 310
BsaAI	YACGTR	1 cut(s)	88
BsaWI	WCCGGW	1 cut(s)	148
Bsc4I	CCNNNNNNNGG	1 cut(s)	412
BseAI	TCCGGA	1 cut(s)	148
BseGI	GGATG	3 cut(s)	33, 259, 300
BseLI	CCNNNNNNNGG	1 cut(s)	412
BseMII	CTCAG	3 cut(s)	14, 416, 433
BshFI	GGCC	1 cut(s)	309
BsiHKCI	CYCGRG	1 cut(s)	123
BsiSI	CCGG	1 cut(s)	149
BslI	CCNNNNNNNGG	1 cut(s)	412
BsmAI	GTCTC	1 cut(s)	57
BsnI	GGCC	1 cut(s)	309
BsoBI	CYCGRG	1 cut(s)	123
Bsp13I	TCCGGA	1 cut(s)	148
Bsp143I	GATC	1 cut(s)	79
BspACI	CCGC	1 cut(s)	441
BspANI	GGCC	1 cut(s)	309
BspCNI	CTCAG	3 cut(s)	15, 417, 432
BspEI	TCCGGA	1 cut(s)	148
BspLI	GGNNCC	1 cut(s)	322
BspMAI	CTGCAG	1 cut(s)	459
BspPI	GGATC	1 cut(s)	74
BssMI	GATC	1 cut(s)	79
Bst6I	CTCTTC	1 cut(s)	363
BstBAI	YACGTR	1 cut(s)	88
BstC8I	GCNNGC	1 cut(s)	107
BstDEI	CTNAG	3 cut(s)	23, 419, 425
BstF5I	GGATG	3 cut(s)	33, 259, 300
BstKTI	GATC	1 cut(s)	82
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	1 cut(s)	79
BstSFI	CTRYAG	2 cut(s)	455, 494
BstSNI	TACGTA	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	309
BtsCI	GGATG	3 cut(s)	33, 259, 300
BtsI	GCAGTG	2 cut(s)	82, 470
BtsIMutI	CAGTG	2 cut(s)	82, 470
Cac8I	GCNNGC	1 cut(s)	107
Cfr13I	GGNCC	2 cut(s)	387, 415
CseI	GACGC	1 cut(s)	194
Csp6I	GTAC	2 cut(s)	273, 338
CviAII	CATG	3 cut(s)	67, 100, 412
CviJI	RGCY	3 cut(s)	205, 309, 375
CviKI_1	RGCY	3 cut(s)	205, 309, 375
CviQI	GTAC	2 cut(s)	273, 338
DdeI	CTNAG	3 cut(s)	23, 419, 425
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
Eco105I	TACGTA	1 cut(s)	88
Eco147I	AGGCCT	1 cut(s)	309
Eco47I	GGWCC	2 cut(s)	387, 415
Eco57I	CTGAAG	1 cut(s)	387
Eco88I	CYCGRG	1 cut(s)	123
EcoRI	GAATTC	1 cut(s)	27
FaeI	CATG	3 cut(s)	70, 103, 415
FaiI	YATR	5 cut(s)	68, 101, 216, 326, 413
FalI	AAGNNNNNCTT	2 cut(s)	156, 188
FatI	CATG	3 cut(s)	66, 99, 411
FauI	CCCGC	1 cut(s)	434
FokI	GGATG	3 cut(s)	20, 266, 307
FspBI	CTAG	2 cut(s)	480, 486
HaeIII	GGCC	1 cut(s)	309
HapII	CCGG	1 cut(s)	149
HgaI	GACGC	1 cut(s)	194
Hin1II	CATG	3 cut(s)	70, 103, 415
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HinfI	GANTC	3 cut(s)	121, 145, 169
HpaII	CCGG	1 cut(s)	149
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	2 cut(s)	49, 97
Hpy188I	TCNGA	1 cut(s)	422
Hpy188III	TCNNGA	5 cut(s)	62, 118, 149, 289, 486
Hpy8I	GTNNAC	2 cut(s)	49, 97
HpyAV	CCTTC	1 cut(s)	299
HpyCH4IV	ACGT	2 cut(s)	9, 87
HpyCH4V	TGCA	4 cut(s)	182, 257, 457, 463
HpyF3I	CTNAG	3 cut(s)	23, 419, 425
HpySE526I	ACGT	2 cut(s)	9, 87
Hsp92II	CATG	3 cut(s)	70, 103, 415
Kpn2I	TCCGGA	1 cut(s)	148
Kzo9I	GATC	1 cut(s)	79
LpnPI	CCDG	3 cut(s)	162, 187, 327
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	2 cut(s)	480, 486
MaeII	ACGT	2 cut(s)	9, 87
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	1 cut(s)	81
MboI	GATC	1 cut(s)	79
MboII	GAAGA	3 cut(s)	145, 148, 380
MluCI	AATT	3 cut(s)	27, 189, 327
MlyI	GAGTC	2 cut(s)	115, 163
MnlI	CCTC	5 cut(s)	285, 320, 420, 428, 482
MroI	TCCGGA	1 cut(s)	148
MseI	TTAA	2 cut(s)	282, 471
MspI	CCGG	1 cut(s)	149
NdeII	GATC	1 cut(s)	79
NlaIII	CATG	3 cut(s)	70, 103, 415
NlaIV	GGNNCC	1 cut(s)	322
NmuCI	GTSAC	1 cut(s)	166
PceI	AGGCCT	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	145
PflMI	CCANNNNNTGG	1 cut(s)	412
PleI	GAGTC	2 cut(s)	115, 163
PpsI	GAGTC	2 cut(s)	115, 163
Ppu21I	YACGTR	1 cut(s)	88
PshBI	ATTAAT	1 cut(s)	471
PspN4I	GGNNCC	1 cut(s)	322
PspPI	GGNCC	2 cut(s)	387, 415
PsrI	GAACNNNNNNTAC	2 cut(s)	313, 345
PstI	CTGCAG	1 cut(s)	459
RsaI	GTAC	2 cut(s)	274, 339
RsaNI	GTAC	2 cut(s)	273, 338
SaqAI	TTAA	2 cut(s)	282, 471
Sau3AI	GATC	1 cut(s)	79
Sau96I	GGNCC	2 cut(s)	387, 415
SchI	GAGTC	2 cut(s)	115, 163
SetI	ASST	5 cut(s)	12, 54, 90, 377, 493
SfaNI	GCATC	1 cut(s)	244
SfcI	CTRYAG	2 cut(s)	455, 494
SinI	GGWCC	2 cut(s)	387, 415
SmlI	CTYRAG	2 cut(s)	116, 289
SmoI	CTYRAG	2 cut(s)	116, 289
SnaBI	TACGTA	1 cut(s)	88
Sse9I	AATT	3 cut(s)	27, 189, 327
SseBI	AGGCCT	1 cut(s)	309
SsiI	CCGC	1 cut(s)	441
SspMI	CTAG	2 cut(s)	480, 486
StuI	AGGCCT	1 cut(s)	309
TaiI	ACGT	2 cut(s)	12, 90
TaqI	TCGA	2 cut(s)	61, 237
TasI	AATT	3 cut(s)	27, 189, 327
TatI	WGTACW	1 cut(s)	337
TfiI	GAWTC	1 cut(s)	145
Tru1I	TTAA	2 cut(s)	282, 471
Tru9I	TTAA	2 cut(s)	282, 471
TscAI	CASTG	2 cut(s)	82, 470
TseFI	GTSAC	1 cut(s)	166
Tsp45I	GTSAC	1 cut(s)	166
TspRI	CASTG	2 cut(s)	82, 470
Van91I	CCANNNNNTGG	1 cut(s)	412
VpaK11BI	GGWCC	2 cut(s)	387, 415
VspI	ATTAAT	1 cut(s)	471
XapI	RAATTY	1 cut(s)	27
XbaI	TCTAGA	1 cut(s)	485
XspI	CTAG	2 cut(s)	480, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.