Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0001057

Physical Location & Seq

Genomic Coordinates Forward (+)

18426857 .. 18428049

Gene Structure 1193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g17890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGAGCATCTGTTGGGTCTTCTTAGAGTTCGAGTGGTGAGAGGGACGAACCTTGCTGTTCGAGATATCCGAAGCAGTGATCCTTATGTCGTCGTCAAAATGGGCAAGCAGAAGTTAAAGACTCGTGTAGTGAAGAAGACTGTCAATCCGGAGTGGAACGAAGACTTAACTCTTTCGGTTGCAGATCCAAGCCTTCCTATCAAACTTTTTGTGTATGACAAAGACACGTTTAGTCTTGATGACAAGATGGGGGATGCTGAGTTTGAGATTGGTCCTTTTGTTCAAGCTTTACGTGTGGGTTTGCAAGGCGTACCAAGTGGAACCATAATTTCAAGATTCCAACCAAGCCGGCAAAACTGTCTAGCTGAAGAGAGCTGCATCGTCTGTACTGATGGTCAAGTTGTCCAGAATATGTGTATCAGGCTGAGAAATGTGGAGAGTGGCGAACTGGAGCTCCAATTACAGTGGATTGATGTTCCTGGCTCTAGGGGTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0005096 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0008047 GO:0008150 GO:0009611 GO:0009628 GO:0009651 GO:0030234 GO:0030695 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043085 GO:0043087 GO:0043547 GO:0043900 GO:0043902 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0047484 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050790 GO:0050896 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0080134 GO:0098772 GO:1900424 GO:1900426 GO:1901000 GO:1901002 GO:1902477 GO:1902479

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

166

Amino Acids

18.47

Weight (kDa)

6.59

Isoelectric Point (pI)

46.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	6 - 93	1.5e-24	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70810 AT5G37740 AT5G37740
fragaria_vesca	FvH4_1g27320 FvH4_1g28670 FvH4_1g28680 FvH4_1g28690 FvH4_2g18820
malus_domestica	MD09G1278700.v1.1 MD09G1278800.v1.1 MD09G1278900.v1.1 MD09G1279000.v1.1 MD17G1260900.v1.1
prunus_persica	Prupe.3G162700_v2.0.a1 Prupe.3G162800_v2.0.a1 Prupe.3G162900_v2.0.a1 Prupe.3G162900_v2.0.a1
pyrus_communis	pycom09g17860 pycom09g17870 pycom09g17880 pycom09g17890 pycom17g26160
rosa_chinensis	RchiOBHm_Chr3g0492961 RchiOBHm_Chr3g0492971 RchiOBHm_Chr3g0492991
rosa_laevigata	RLG00000022734 RLG00000022736 RLG00000022737 RLG00000022739 RLG00000022740 RLG00000022741
rosa_multiflora	Rmu_co8406109.1_g000001 Rmu_sc0000395.1_g000015 Rmu_sc0000395.1_g000023 Rmu_sc0000395.1_g000029 Rmu_sc0008956.1_g000004 Rmu_sc0016690.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391990 Rroxscaffold_6G00392000 Rroxscaffold_6G00392010
rosa_rugosa	Rorug03G0256700 Rorug03G0257800 Rorug03G0258000 Rorug03G0258400 Rorug03G0258500 Rorug03G0258500
rosa_samantha	Rh3AG306200 Rh3AG307300 Rh3AG307500 Rh3BG342700 Rh3BG342800 Rh3BG342900 Rh3CG340000 Rh3CG340200 Rh3DG342000 Rh3DG342200 Rh3DG342400
rosa_wichuraiana	Rw3G027020 Rw3G027030 Rw3G027040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	148
AclWI	GGATC	2 cut(s)	74, 179
AcuI	CTGAAG	1 cut(s)	387
AfaI	GTAC	2 cut(s)	312, 388
AflIII	ACRYGT	2 cut(s)	225, 292
AgsI	TTSAA	2 cut(s)	284, 333
AjnI	CCWGG	1 cut(s)	478
AloI	GAACNNNNNNTCC	2 cut(s)	438, 470
AluBI	AGCT	4 cut(s)	287, 365, 375, 454
AluI	AGCT	4 cut(s)	287, 365, 375, 454
Alw21I	GWGCWC	1 cut(s)	456
AlwI	GGATC	2 cut(s)	74, 179
Aor13HI	TCCGGA	1 cut(s)	148
ApeKI	GCWGC	1 cut(s)	375
AspS9I	GGNCC	1 cut(s)	272
AsuHPI	GGTGA	1 cut(s)	49
AvaII	GGWCC	1 cut(s)	272
BanII	GRGCYC	1 cut(s)	456
BauI	CACGAG	1 cut(s)	123
BbsI	GAAGAC	3 cut(s)	11, 143, 168
Bbv12I	GWGCWC	1 cut(s)	456
BbvI	GCAGC	1 cut(s)	362
BccI	CCATC	2 cut(s)	241, 386
BciT130I	CCWGG	1 cut(s)	480
BfaI	CTAG	2 cut(s)	362, 486
BisI	GCNGC	1 cut(s)	376
BlsI	GCNGC	1 cut(s)	377
Bme1390I	CCNGG	1 cut(s)	480
Bme18I	GGWCC	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	272
BmiI	GGNNCC	1 cut(s)	322
BmrFI	CCNGG	1 cut(s)	480
BmsI	GCATC	3 cut(s)	16, 244, 387
BpiI	GAAGAC	3 cut(s)	11, 143, 168
BpmI	CTGGAG	1 cut(s)	470
BsaAI	YACGTR	1 cut(s)	293
BsaWI	WCCGGW	1 cut(s)	148
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 438, 468
Bse118I	RCCGGY	1 cut(s)	348
Bse1I	ACTGG	1 cut(s)	453
BseAI	TCCGGA	1 cut(s)	148
BseBI	CCWGG	1 cut(s)	480
BseGI	GGATG	1 cut(s)	259
BseMII	CTCAG	2 cut(s)	249, 416
BseNI	ACTGG	1 cut(s)	453
BseXI	GCAGC	1 cut(s)	362
BsiHKAI	GWGCWC	1 cut(s)	456
BsiSI	CCGG	2 cut(s)	149, 349
BslFI	GGGAC	1 cut(s)	58
BsmFI	GGGAC	1 cut(s)	58
Bsp1286I	GDGCHC	1 cut(s)	456
Bsp13I	TCCGGA	1 cut(s)	148
Bsp143I	GATC	2 cut(s)	79, 184
BspCNI	CTCAG	2 cut(s)	250, 417
BspEI	TCCGGA	1 cut(s)	148
BspLI	GGNNCC	1 cut(s)	322
BspPI	GGATC	2 cut(s)	74, 179
BsrFI	RCCGGY	1 cut(s)	348
BsrI	ACTGG	1 cut(s)	453
BssAI	RCCGGY	1 cut(s)	348
BssMI	GATC	2 cut(s)	79, 184
BssSI	CACGAG	1 cut(s)	123
Bst2BI	CACGAG	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	480
Bst4CI	ACNGT	3 cut(s)	142, 359, 465
Bst6I	CTCTTC	1 cut(s)	363
BstBAI	YACGTR	1 cut(s)	293
BstC8I	GCNNGC	2 cut(s)	107, 350
BstDEI	CTNAG	3 cut(s)	23, 258, 425
BstF5I	GGATG	1 cut(s)	259
BstKTI	GATC	2 cut(s)	82, 187
BstMBI	GATC	2 cut(s)	79, 184
BstNI	CCWGG	1 cut(s)	480
BstSCI	CCNGG	1 cut(s)	478
BstV1I	GCAGC	1 cut(s)	362
BstV2I	GAAGAC	3 cut(s)	11, 143, 168
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BtsCI	GGATG	1 cut(s)	259
BtsI	GCAGTG	1 cut(s)	82
BtsIMutI	CAGTG	2 cut(s)	82, 470
Cac8I	GCNNGC	2 cut(s)	107, 350
Cfr10I	RCCGGY	1 cut(s)	348
Cfr13I	GGNCC	1 cut(s)	272
Csp6I	GTAC	2 cut(s)	311, 387
CspCI	CAANNNNNGTGG	2 cut(s)	446, 481
CviJI	RGCY	8 cut(s)	192, 287, 348, 365, 375, 424, 454, 483
CviKI_1	RGCY	8 cut(s)	192, 287, 348, 365, 375, 424, 454, 483
CviQI	GTAC	2 cut(s)	311, 387
DdeI	CTNAG	3 cut(s)	23, 258, 425
DpnI	GATC	2 cut(s)	81, 186
DpnII	GATC	2 cut(s)	79, 184
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
Ecl136II	GAGCTC	1 cut(s)	454
Eco24I	GRGCYC	1 cut(s)	456
Eco32I	GATATC	1 cut(s)	67
Eco47I	GGWCC	1 cut(s)	272
Eco53kI	GAGCTC	1 cut(s)	454
Eco57I	CTGAAG	1 cut(s)	387
EcoICRI	GAGCTC	1 cut(s)	454
EcoRII	CCWGG	1 cut(s)	478
EcoRV	GATATC	1 cut(s)	67
EcoT38I	GRGCYC	1 cut(s)	456
FaiI	YATR	4 cut(s)	87, 216, 326, 413
FaqI	GGGAC	1 cut(s)	58
Fnu4HI	GCNGC	1 cut(s)	376
FokI	GGATG	1 cut(s)	266
FriOI	GRGCYC	1 cut(s)	456
Fsp4HI	GCNGC	1 cut(s)	376
FspBI	CTAG	2 cut(s)	362, 486
GluI	GCNGC	1 cut(s)	376
GsuI	CTGGAG	1 cut(s)	470
HapII	CCGG	2 cut(s)	149, 349
HindIII	AAGCTT	1 cut(s)	285
HinfI	GANTC	2 cut(s)	121, 336
HpaII	CCGG	2 cut(s)	149, 349
HphI	GGTGA	1 cut(s)	49
Hpy188I	TCNGA	1 cut(s)	71
Hpy188III	TCNNGA	5 cut(s)	62, 149, 236, 333, 406
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	1 cut(s)	203
HpyCH4III	ACNGT	3 cut(s)	142, 359, 465
HpyCH4IV	ACGT	2 cut(s)	227, 292
HpyCH4V	TGCA	3 cut(s)	182, 304, 378
HpyF3I	CTNAG	3 cut(s)	23, 258, 425
HpySE526I	ACGT	2 cut(s)	227, 292
Kpn2I	TCCGGA	1 cut(s)	148
KroI	GCCGGC	1 cut(s)	348
KroNI	GCCGGC	1 cut(s)	350
Kzo9I	GATC	2 cut(s)	79, 184
LmnI	GCTCC	3 cut(s)	4, 451, 459
LpnPI	CCDG	7 cut(s)	162, 362, 406, 419, 434, 465, 492
Lsp1109I	GCAGC	1 cut(s)	362
LweI	GCATC	3 cut(s)	16, 244, 387
MaeI	CTAG	2 cut(s)	362, 486
MaeII	ACGT	2 cut(s)	227, 292
MalI	GATC	2 cut(s)	81, 186
MboI	GATC	2 cut(s)	79, 184
MboII	GAAGA	5 cut(s)	11, 145, 148, 173, 380
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	1 cut(s)	456
MluCI	AATT	2 cut(s)	327, 458
MlyI	GAGTC	1 cut(s)	115
MmeI	TCCRAC	1 cut(s)	364
MnlI	CCTC	1 cut(s)	35
MroI	TCCGGA	1 cut(s)	148
MroNI	GCCGGC	1 cut(s)	348
MseI	TTAA	2 cut(s)	116, 167
MspI	CCGG	2 cut(s)	149, 349
MspR9I	CCNGG	1 cut(s)	480
MvaI	CCWGG	1 cut(s)	480
NaeI	GCCGGC	1 cut(s)	350
NdeII	GATC	2 cut(s)	79, 184
NgoMIV	GCCGGC	1 cut(s)	348
NlaIV	GGNNCC	1 cut(s)	322
PcsI	WCGNNNNNNNCGW	1 cut(s)	67
PdiI	GCCGGC	1 cut(s)	350
PfeI	GAWTC	1 cut(s)	336
PkrI	GCNGC	1 cut(s)	377
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
Ppu21I	YACGTR	1 cut(s)	293
Psp124BI	GAGCTC	1 cut(s)	456
Psp6I	CCWGG	1 cut(s)	478
PspGI	CCWGG	1 cut(s)	478
PspN4I	GGNNCC	1 cut(s)	322
PspPI	GGNCC	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	184
RsaI	GTAC	2 cut(s)	312, 388
RsaNI	GTAC	2 cut(s)	311, 387
SacI	GAGCTC	1 cut(s)	456
SaqAI	TTAA	2 cut(s)	116, 167
SatI	GCNGC	1 cut(s)	376
Sau3AI	GATC	2 cut(s)	79, 184
Sau96I	GGNCC	1 cut(s)	272
SchI	GAGTC	1 cut(s)	115
ScrFI	CCNGG	1 cut(s)	480
SduI	GDGCHC	1 cut(s)	456
SetI	ASST	7 cut(s)	54, 230, 289, 295, 367, 377, 456
SfaNI	GCATC	3 cut(s)	16, 244, 387
SinI	GGWCC	1 cut(s)	272
Sse9I	AATT	2 cut(s)	327, 458
SspMI	CTAG	2 cut(s)	362, 486
SstI	GAGCTC	1 cut(s)	456
StyD4I	CCNGG	1 cut(s)	478
TaaI	ACNGT	3 cut(s)	142, 359, 465
TaiI	ACGT	2 cut(s)	230, 295
TaqI	TCGA	2 cut(s)	31, 61
TasI	AATT	2 cut(s)	327, 458
TatI	WGTACW	1 cut(s)	386
TfiI	GAWTC	1 cut(s)	336
Tru1I	TTAA	2 cut(s)	116, 167
Tru9I	TTAA	2 cut(s)	116, 167
TscAI	CASTG	2 cut(s)	82, 470
TseI	GCWGC	1 cut(s)	375
TspRI	CASTG	2 cut(s)	82, 470
VpaK11BI	GGWCC	1 cut(s)	272
XspI	CTAG	2 cut(s)	362, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.