RLG00000022734

ADP-ribosylation factor GTPase-activating protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
10953970 .. 10954914
945 bp
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UTR
Exon/CDS
Intron
RLM00000022734

Sequence Viewer

Length: 498 bp
ATGGAGAATCTGGTGGGTCTTTTGCGGATTCACATTCAAAGAGGAGTGAATCTTGCCGTAAGAGACATGAGAAGTAGTGACCCTTACCTCGTTATCAAAATGGGCAAGCAGAAGTTGAAAACTCGCGTTGTGAAGCGGAATGTGAACCCTGAGTGGGACGAAAAATTGACTCTTACTGTTTCAGACCCAAATATTCCGGTTAAGCTCTTTGTATATGACAAAGATACTTTCACTTTTGATGACAAGATGGGTGATGCAGAGTTTGAGATTGCTACATTCGTTAAAGTAGTGCAGATGGGCTTGGAAGGTCTCCCAGACGGAACCATAATAGCGAAAGTTCAACCAACTAGGCAAAATTGCCTTGCCGAAGAGAGCCGCATTATTTGGTCCAACGGCAAAGTTGTGCAAAACATGGTTCTCAGACTCAGAAATGTCGAGTGTGGTGAAGTGGAACTCCAATTGCAGTGGATTCATGTCCCTCGTTCTATGGGTCACTGA

Protein Analysis

166

Amino Acids

18.92

Weight (kDa)

8.56

Isoelectric Point (pI)

46.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 6 - 93 4.2e-21 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 126
AciI CCGC 3 cut(s) 25, 136, 376
AfiI CCNNNNNNNGG 1 cut(s) 154
AgsI TTSAA 3 cut(s) 38, 118, 341
AluBI AGCT 1 cut(s) 205
AluI AGCT 1 cut(s) 205
Alw26I GTCTC 2 cut(s) 57, 314
AspS9I GGNCC 1 cut(s) 387
AsuHPI GGTGA 2 cut(s) 263, 455
AvaII GGWCC 1 cut(s) 387
BccI CCATC 2 cut(s) 241, 289
BceAI ACGGC 2 cut(s) 41, 409
BcoDI GTCTC 2 cut(s) 57, 314
BfaI CTAG 1 cut(s) 348
BisI GCNGC 1 cut(s) 376
BlsI GCNGC 1 cut(s) 377
Bme18I GGWCC 1 cut(s) 387
BmgT120I GGNCC 1 cut(s) 387
BmiI GGNNCC 1 cut(s) 322
BmsI GCATC 1 cut(s) 244
BsaI GGTCTC 1 cut(s) 314
BsaWI WCCGGW 1 cut(s) 196
Bsc4I CCNNNNNNNGG 1 cut(s) 154
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMII CTCAG 3 cut(s) 141, 433, 439
BseRI GAGGAG 1 cut(s) 57
BsgI GTGCAG 1 cut(s) 311
Bsh1236I CGCG 1 cut(s) 126
BsiSI CCGG 1 cut(s) 197
BslFI GGGAC 2 cut(s) 170, 461
BslI CCNNNNNNNGG 1 cut(s) 154
BsmAI GTCTC 2 cut(s) 57, 314
BsmFI GGGAC 2 cut(s) 170, 461
Bso31I GGTCTC 1 cut(s) 314
BspACI CCGC 3 cut(s) 25, 136, 376
BspCNI CTCAG 3 cut(s) 142, 432, 438
BspFNI CGCG 1 cut(s) 126
BspLI GGNNCC 1 cut(s) 322
BspTNI GGTCTC 1 cut(s) 314
Bst4CI ACNGT 1 cut(s) 178
Bst6I CTCTTC 1 cut(s) 363
BstC8I GCNNGC 1 cut(s) 107
BstDEI CTNAG 3 cut(s) 150, 419, 425
BstFNI CGCG 1 cut(s) 126
BstMAI GTCTC 2 cut(s) 57, 314
BstUI CGCG 1 cut(s) 126
BtsI GCAGTG 1 cut(s) 470
BtsIMutI CAGTG 2 cut(s) 470, 493
Cac8I GCNNGC 1 cut(s) 107
Cfr13I GGNCC 1 cut(s) 387
CspCI CAANNNNNGTGG 2 cut(s) 446, 481
CviAII CATG 3 cut(s) 67, 412, 473
CviJI RGCY 3 cut(s) 205, 300, 375
CviKI_1 RGCY 3 cut(s) 205, 300, 375
DdeI CTNAG 3 cut(s) 150, 419, 425
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
Eco31I GGTCTC 1 cut(s) 314
Eco47I GGWCC 1 cut(s) 387
FaeI CATG 3 cut(s) 70, 415, 476
FaiI YATR 7 cut(s) 68, 214, 216, 326, 413, 474, 488
FaqI GGGAC 2 cut(s) 170, 461
FatI CATG 3 cut(s) 66, 411, 472
Fnu4HI GCNGC 1 cut(s) 376
Fsp4HI GCNGC 1 cut(s) 376
FspBI CTAG 1 cut(s) 348
GluI GCNGC 1 cut(s) 376
HapII CCGG 1 cut(s) 197
Hin1II CATG 3 cut(s) 70, 415, 476
HinfI GANTC 6 cut(s) 7, 28, 49, 169, 423, 469
HpaII CCGG 1 cut(s) 197
HphI GGTGA 2 cut(s) 263, 455
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 3 cut(s) 184, 422, 428
Hpy8I GTNNAC 1 cut(s) 145
HpyAV CCTTC 1 cut(s) 299
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4V TGCA 4 cut(s) 257, 292, 406, 463
HpyF3I CTNAG 3 cut(s) 150, 419, 425
Hsp92II CATG 3 cut(s) 70, 415, 476
LpnPI CCDG 3 cut(s) 162, 210, 327
LweI GCATC 1 cut(s) 244
MaeI CTAG 1 cut(s) 348
MaeIII GTNAC 2 cut(s) 77, 491
MboII GAAGA 1 cut(s) 380
MfeI CAATTG 1 cut(s) 458
MluCI AATT 3 cut(s) 164, 355, 458
MlyI GAGTC 2 cut(s) 163, 417
MmeI TCCRAC 1 cut(s) 414
MnlI CCTC 3 cut(s) 35, 98, 489
MseI TTAA 2 cut(s) 201, 282
MspI CCGG 1 cut(s) 197
MunI CAATTG 1 cut(s) 458
MvnI CGCG 1 cut(s) 126
NlaIII CATG 3 cut(s) 70, 415, 476
NlaIV GGNNCC 1 cut(s) 322
NmuCI GTSAC 2 cut(s) 77, 491
PfeI GAWTC 4 cut(s) 7, 28, 49, 469
PkrI GCNGC 1 cut(s) 377
PleI GAGTC 2 cut(s) 163, 417
PpsI GAGTC 2 cut(s) 163, 417
PspN4I GGNNCC 1 cut(s) 322
PspPI GGNCC 1 cut(s) 387
SaqAI TTAA 2 cut(s) 201, 282
SatI GCNGC 1 cut(s) 376
Sau96I GGNCC 1 cut(s) 387
SchI GAGTC 2 cut(s) 163, 417
SetI ASST 3 cut(s) 90, 207, 310
SfaNI GCATC 1 cut(s) 244
SinI GGWCC 1 cut(s) 387
Sse9I AATT 3 cut(s) 164, 355, 458
SsiI CCGC 3 cut(s) 25, 136, 376
SspI AATATT 1 cut(s) 193
SspMI CTAG 1 cut(s) 348
TaaI ACNGT 1 cut(s) 178
TaqI TCGA 1 cut(s) 435
TasI AATT 3 cut(s) 164, 355, 458
TauI GCSGC 1 cut(s) 378
TfiI GAWTC 4 cut(s) 7, 28, 49, 469
Tru1I TTAA 2 cut(s) 201, 282
Tru9I TTAA 2 cut(s) 201, 282
TscAI CASTG 1 cut(s) 470
TseFI GTSAC 2 cut(s) 77, 491
Tsp45I GTSAC 2 cut(s) 77, 491
TspDTI ATGAA 1 cut(s) 461
TspGWI ACGGA 1 cut(s) 333
TspRI CASTG 1 cut(s) 470
VpaK11BI GGWCC 1 cut(s) 387
XspI CTAG 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.