Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001057

Physical Location & Seq

Genomic Coordinates Forward (+)

18175122 .. 18177011

Gene Structure 1890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G162800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGAGAACTTGATGGGTCTTCTGAGAATTCACATCCAAAGAGGAGTGAACCTTGCTGTTAGAGACATGAGAAGCAGTGACCCTTATGCTGTTATCAAAATGGGCAAGCAGAAGGTGAAAACCAGGGTGGTGAAGAAGAATGTGAATCCTGAGTGGAATGAAGATTTGACACTCTCAGTTGCAGACCCAAATCTCCCAATCAGGCTTTGTGTGTATGACAGAGACACCTTTAGTTTTGATGATAAGATGGGGGATGCAGAGTTTGAGGTTGCGACATTTATTAAGGTCTTGAAGATGCGCTTGGAAGGCCTCCCAGATGGGACAATAATCACAAAAGTGCAACCAAATAGGCAAAACTGCCTTGCTGAAGAGAGCTACATTGTCTGGTCCAAAGGCAAACTTGTCCAAAACATGGTCCTCAGACTGAGAAATGTGGAGTGTGGGGAAGTTGAACTTCAATTGAAGTGGATTGATGTTCCTACTTCTAAGGGTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0008047 GO:0008150 GO:0008289 GO:0009611 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0023051 GO:0023056 GO:0030234 GO:0030695 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0043900 GO:0043902 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0080134 GO:0098772 GO:1900424 GO:1900426 GO:1901000 GO:1901002 GO:1901419 GO:1901421 GO:1902477 GO:1902479 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

166

Amino Acids

18.9

Weight (kDa)

8.76

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70810 AT5G37740 AT5G37740
fragaria_vesca	FvH4_1g27320 FvH4_1g28670 FvH4_1g28680 FvH4_1g28690 FvH4_2g18820
malus_domestica	MD09G1278700.v1.1 MD09G1278800.v1.1 MD09G1278900.v1.1 MD09G1279000.v1.1 MD17G1260900.v1.1
prunus_persica	Prupe.3G162700_v2.0.a1 Prupe.3G162800_v2.0.a1 Prupe.3G162900_v2.0.a1 Prupe.3G162900_v2.0.a1
pyrus_communis	pycom09g17860 pycom09g17870 pycom09g17880 pycom09g17890 pycom17g26160
rosa_chinensis	RchiOBHm_Chr3g0492961 RchiOBHm_Chr3g0492971 RchiOBHm_Chr3g0492991
rosa_laevigata	RLG00000022734 RLG00000022736 RLG00000022737 RLG00000022739 RLG00000022740 RLG00000022741
rosa_multiflora	Rmu_co8406109.1_g000001 Rmu_sc0000395.1_g000015 Rmu_sc0000395.1_g000023 Rmu_sc0000395.1_g000029 Rmu_sc0008956.1_g000004 Rmu_sc0016690.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391990 Rroxscaffold_6G00392000 Rroxscaffold_6G00392010
rosa_rugosa	Rorug03G0256700 Rorug03G0257800 Rorug03G0258000 Rorug03G0258400 Rorug03G0258500 Rorug03G0258500
rosa_samantha	Rh3AG306200 Rh3AG307300 Rh3AG307500 Rh3BG342700 Rh3BG342800 Rh3BG342900 Rh3CG340000 Rh3CG340200 Rh3DG342000 Rh3DG342200 Rh3DG342400
rosa_wichuraiana	Rw3G027020 Rw3G027030 Rw3G027040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	412
AcsI	RAATTY	1 cut(s)	27
AcuI	CTGAAG	1 cut(s)	387
AfiI	CCNNNNNNNGG	1 cut(s)	412
AgsI	TTSAA	4 cut(s)	292, 452, 458, 463
AjnI	CCWGG	1 cut(s)	122
AjuI	GAANNNNNNNTTGG	2 cut(s)	284, 316
AleI	CACNNNNGTG	1 cut(s)	335
AluBI	AGCT	1 cut(s)	375
AluI	AGCT	1 cut(s)	375
Alw26I	GTCTC	2 cut(s)	57, 216
AoxI	GGCC	1 cut(s)	307
ApoI	RAATTY	1 cut(s)	27
AspLEI	GCGC	1 cut(s)	300
AspS9I	GGNCC	2 cut(s)	387, 415
AsuHPI	GGTGA	2 cut(s)	127, 142
AvaII	GGWCC	2 cut(s)	387, 415
BbsI	GAAGAC	1 cut(s)	11
BccI	CCATC	3 cut(s)	7, 241, 311
BciT130I	CCWGG	1 cut(s)	124
BcoDI	GTCTC	2 cut(s)	57, 216
BfaI	CTAG	1 cut(s)	496
Bme1390I	CCNGG	1 cut(s)	124
Bme18I	GGWCC	2 cut(s)	387, 415
BmgT120I	GGNCC	2 cut(s)	387, 415
BmrFI	CCNGG	1 cut(s)	124
BmsI	GCATC	2 cut(s)	244, 285
BpiI	GAAGAC	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	1 cut(s)	412
BseBI	CCWGG	1 cut(s)	124
BseDI	CCNNGG	1 cut(s)	123
BseGI	GGATG	2 cut(s)	33, 259
BseLI	CCNNNNNNNGG	1 cut(s)	412
BseMII	CTCAG	5 cut(s)	14, 141, 189, 416, 433
BseRI	GAGGAG	1 cut(s)	57
BshFI	GGCC	1 cut(s)	309
BslFI	GGGAC	1 cut(s)	334
BslI	CCNNNNNNNGG	1 cut(s)	412
BsmAI	GTCTC	2 cut(s)	57, 216
BsmFI	GGGAC	1 cut(s)	334
BsnI	GGCC	1 cut(s)	309
BspANI	GGCC	1 cut(s)	309
BspCNI	CTCAG	5 cut(s)	15, 142, 188, 417, 432
BssECI	CCNNGG	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	124
Bst6I	CTCTTC	1 cut(s)	363
BstC8I	GCNNGC	1 cut(s)	107
BstDEI	CTNAG	6 cut(s)	23, 150, 175, 419, 425, 486
BstF5I	GGATG	2 cut(s)	33, 259
BstHHI	GCGC	1 cut(s)	300
BstMAI	GTCTC	2 cut(s)	57, 216
BstMWI	GCNNNNNNNGC	1 cut(s)	306
BstNI	CCWGG	1 cut(s)	124
BstSCI	CCNGG	1 cut(s)	122
BstV2I	GAAGAC	1 cut(s)	11
BsuRI	GGCC	1 cut(s)	309
BtsCI	GGATG	2 cut(s)	33, 259
BtsI	GCAGTG	1 cut(s)	82
BtsIMutI	CAGTG	1 cut(s)	82
Cac8I	GCNNGC	1 cut(s)	107
CfoI	GCGC	1 cut(s)	300
Cfr13I	GGNCC	2 cut(s)	387, 415
CspCI	CAANNNNNGTGG	2 cut(s)	446, 481
CviAII	CATG	2 cut(s)	67, 412
CviJI	RGCY	3 cut(s)	205, 309, 375
CviKI_1	RGCY	3 cut(s)	205, 309, 375
DdeI	CTNAG	6 cut(s)	23, 150, 175, 419, 425, 486
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
Eco147I	AGGCCT	1 cut(s)	309
Eco47I	GGWCC	2 cut(s)	387, 415
Eco57I	CTGAAG	1 cut(s)	387
EcoRI	GAATTC	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	122
FaeI	CATG	2 cut(s)	70, 415
FaiI	YATR	4 cut(s)	68, 87, 216, 413
FalI	AAGNNNNNCTT	6 cut(s)	284, 316, 384, 416, 438, 470
FaqI	GGGAC	1 cut(s)	334
FatI	CATG	2 cut(s)	66, 411
FokI	GGATG	2 cut(s)	20, 266
FspBI	CTAG	1 cut(s)	496
GlaI	GCGC	1 cut(s)	299
HaeIII	GGCC	1 cut(s)	309
HhaI	GCGC	1 cut(s)	300
Hin1II	CATG	2 cut(s)	70, 415
Hin6I	GCGC	1 cut(s)	298
HinP1I	GCGC	1 cut(s)	298
HinfI	GANTC	1 cut(s)	145
HphI	GGTGA	2 cut(s)	127, 142
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	2 cut(s)	24, 422
Hpy188III	TCNNGA	2 cut(s)	149, 289
Hpy8I	GTNNAC	1 cut(s)	49
HpyAV	CCTTC	2 cut(s)	106, 299
HpyCH4V	TGCA	3 cut(s)	182, 257, 340
HpyF10VI	GCNNNNNNNGC	1 cut(s)	306
HpyF3I	CTNAG	6 cut(s)	23, 150, 175, 419, 425, 486
Hsp92II	CATG	2 cut(s)	70, 415
HspAI	GCGC	1 cut(s)	298
LpnPI	CCDG	6 cut(s)	109, 136, 162, 187, 327, 370
LweI	GCATC	2 cut(s)	244, 285
MaeI	CTAG	1 cut(s)	496
MaeIII	GTNAC	1 cut(s)	77
MboII	GAAGA	6 cut(s)	11, 145, 148, 173, 304, 380
MfeI	CAATTG	1 cut(s)	458
MluCI	AATT	2 cut(s)	27, 458
MnlI	CCTC	4 cut(s)	35, 259, 320, 428
MseI	TTAA	1 cut(s)	282
MslI	CAYNNNNRTG	1 cut(s)	335
MspR9I	CCNGG	1 cut(s)	124
MunI	CAATTG	1 cut(s)	458
MvaI	CCWGG	1 cut(s)	124
MwoI	GCNNNNNNNGC	1 cut(s)	306
NlaIII	CATG	2 cut(s)	70, 415
NmuCI	GTSAC	1 cut(s)	77
OliI	CACNNNNGTG	1 cut(s)	335
PceI	AGGCCT	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	145
PflMI	CCANNNNNTGG	1 cut(s)	412
Psp6I	CCWGG	1 cut(s)	122
PspGI	CCWGG	1 cut(s)	122
PspPI	GGNCC	2 cut(s)	387, 415
RseI	CAYNNNNRTG	1 cut(s)	335
SaqAI	TTAA	1 cut(s)	282
Sau96I	GGNCC	2 cut(s)	387, 415
ScrFI	CCNGG	1 cut(s)	124
SetI	ASST	6 cut(s)	54, 117, 230, 270, 288, 377
SfaNI	GCATC	2 cut(s)	244, 285
SinI	GGWCC	2 cut(s)	387, 415
SmiMI	CAYNNNNRTG	1 cut(s)	335
Sse9I	AATT	2 cut(s)	27, 458
SseBI	AGGCCT	1 cut(s)	309
SspMI	CTAG	1 cut(s)	496
StuI	AGGCCT	1 cut(s)	309
StyD4I	CCNGG	1 cut(s)	122
TasI	AATT	2 cut(s)	27, 458
TfiI	GAWTC	1 cut(s)	145
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	1 cut(s)	82
TseFI	GTSAC	1 cut(s)	77
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	1 cut(s)	174
TspRI	CASTG	1 cut(s)	82
Van91I	CCANNNNNTGG	1 cut(s)	412
VpaK11BI	GGWCC	2 cut(s)	387, 415
XapI	RAATTY	1 cut(s)	27
XspI	CTAG	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.