GTPase activator activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 22 - 205 | 1.6e-51 | TIR domain |
| TIR_2 | PF13676 | 25 - 136 | 3.8e-15 | TIR domain |
| NB-ARC | PF00931 | 219 - 377 | 6.6e-25 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 446 - 516 | 1.7e-13 | Disease resistance protein Roq1-like, winged-helix domain |
| C-JID | PF20160 | 1003 - 1132 | 7.4e-08 | C-JID domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 513, 2279 |
| AatII | GACGTC | 1 cut(s) | 75 |
| Acc65I | GGTACC | 1 cut(s) | 2312 |
| AccB1I | GGYRCC | 1 cut(s) | 2312 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2174, 3229 |
| AccBSI | CCGCTC | 1 cut(s) | 2936 |
| AccII | CGCG | 4 cut(s) | 132, 3314, 3316, 3323 |
| AccIII | TCCGGA | 2 cut(s) | 205, 3076 |
| AclWI | GGATC | 8 cut(s) | 356, 369, 1277, 1935, 2449, 2751, 3087, 3131 |
| AcoI | YGGCCR | 4 cut(s) | 480, 1158, 2931, 3123 |
| AcuI | CTGAAG | 2 cut(s) | 615, 2351 |
| AcyI | GRCGYC | 2 cut(s) | 72, 402 |
| AdeI | CACNNNGTG | 1 cut(s) | 282 |
| AfaI | GTAC | 6 cut(s) | 731, 802, 1512, 2314, 3196, 3383 |
| AfeI | AGCGCT | 1 cut(s) | 220 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 136, 720, 1142, 1888, 2174, 3229, 3471, 3476 |
| AflII | CTTAAG | 1 cut(s) | 2372 |
| AflIII | ACRYGT | 3 cut(s) | 550, 1030, 3321 |
| AjnI | CCWGG | 6 cut(s) | 2308, 2420, 3007, 3184, 3273, 3469 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 1241, 1273, 2241, 2273, 2828, 2860 |
| Alw21I | GWGCWC | 5 cut(s) | 14, 213, 876, 1038, 1104 |
| Alw26I | GTCTC | 5 cut(s) | 1949, 2300, 2340, 2393, 2628 |
| AlwI | GGATC | 8 cut(s) | 356, 369, 1277, 1935, 2449, 2751, 3087, 3131 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 593, 2507 |
| Ama87I | CYCGRG | 2 cut(s) | 1136, 2126 |
| Aor13HI | TCCGGA | 2 cut(s) | 205, 3076 |
| Aor51HI | AGCGCT | 1 cut(s) | 220 |
| AoxI | GGCC | 9 cut(s) | 480, 1075, 1158, 1756, 1835, 2260, 2931, 3123, 3462 |
| ApeKI | GCWGC | 5 cut(s) | 390, 1569, 2148, 3070, 3288 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 161, 1533, 2911 |
| Asp718I | GGTACC | 1 cut(s) | 2312 |
| AspLEI | GCGC | 3 cut(s) | 221, 1324, 3316 |
| AspS9I | GGNCC | 6 cut(s) | 1075, 1757, 1835, 2026, 2217, 3479 |
| AsuC2I | CCSGG | 1 cut(s) | 1560 |
| AsuHPI | GGTGA | 5 cut(s) | 42, 104, 249, 1004, 2824 |
| AsuNHI | GCTAGC | 1 cut(s) | 1069 |
| AvaI | CYCGRG | 2 cut(s) | 1136, 2126 |
| AvaII | GGWCC | 3 cut(s) | 2026, 2217, 3479 |
| AxyI | CCTNAGG | 1 cut(s) | 654 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 792, 825 |
| BalI | TGGCCA | 3 cut(s) | 482, 1160, 3125 |
| BamHI | GGATCC | 1 cut(s) | 361 |
| BanI | GGYRCC | 1 cut(s) | 2312 |
| BanII | GRGCYC | 4 cut(s) | 213, 1104, 1560, 3373 |
| BauI | CACGAG | 3 cut(s) | 1548, 3261, 3283 |
| BbsI | GAAGAC | 5 cut(s) | 67, 102, 1903, 2197, 2657 |
| Bbv12I | GWGCWC | 5 cut(s) | 14, 213, 876, 1038, 1104 |
| BbvI | GCAGC | 5 cut(s) | 402, 1581, 2135, 3057, 3275 |
| BceAI | ACGGC | 1 cut(s) | 2605 |
| BciT130I | CCWGG | 6 cut(s) | 2310, 2422, 3009, 3186, 3275, 3471 |
| BciVI | GTATCC | 2 cut(s) | 1815, 3271 |
| BclI | TGATCA | 1 cut(s) | 433 |
| BcnI | CCSGG | 1 cut(s) | 1560 |
| BcoDI | GTCTC | 5 cut(s) | 1949, 2300, 2340, 2393, 2628 |
| BfmI | CTRYAG | 1 cut(s) | 804 |
| BfoI | RGCGCY | 1 cut(s) | 222 |
| BfrI | CTTAAG | 1 cut(s) | 2372 |
| BfuI | GTATCC | 2 cut(s) | 1815, 3271 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2422 |
| BglII | AGATCT | 1 cut(s) | 1234 |
| BisI | GCNGC | 8 cut(s) | 391, 1570, 1573, 2149, 2414, 2934, 3071, 3289 |
| BlpI | GCTNAGC | 1 cut(s) | 411 |
| BlsI | GCNGC | 8 cut(s) | 392, 1571, 1574, 2150, 2415, 2935, 3072, 3290 |
| Bme1390I | CCNGG | 7 cut(s) | 1560, 2310, 2422, 3009, 3186, 3275, 3471 |
| Bme18I | GGWCC | 3 cut(s) | 2026, 2217, 3479 |
| BmeT110I | CYCGRG | 2 cut(s) | 1136, 2126 |
| BmgT120I | GGNCC | 6 cut(s) | 1075, 1757, 1835, 2026, 2217, 3479 |
| BmiI | GGNNCC | 6 cut(s) | 363, 1557, 1759, 2218, 2314, 3220 |
| BmrFI | CCNGG | 7 cut(s) | 1560, 2310, 2422, 3009, 3186, 3275, 3471 |
| BmsI | GCATC | 9 cut(s) | 490, 1309, 1488, 1698, 1851, 2219, 2351, 2708, 2952 |
| BmtI | GCTAGC | 1 cut(s) | 1073 |
| BpiI | GAAGAC | 5 cut(s) | 67, 102, 1903, 2197, 2657 |
| BpmI | CTGGAG | 3 cut(s) | 158, 1877, 2282 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2921, 2937 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 411 |
| BpuEI | CTTGAG | 7 cut(s) | 100, 235, 1118, 1436, 2006, 3170, 3518 |
| BpuMI | CCSGG | 1 cut(s) | 1560 |
| BsaBI | GATNNNNATC | 2 cut(s) | 942, 979 |
| BsaHI | GRCGYC | 2 cut(s) | 72, 402 |
| BsaI | GGTCTC | 1 cut(s) | 1949 |
| BsaJI | CCNNGG | 6 cut(s) | 315, 1137, 1183, 2531, 3185, 3470 |
| BsaWI | WCCGGW | 3 cut(s) | 205, 2740, 3076 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 8, 38, 2730, 2760 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 136, 720, 1142, 1888, 2174, 3229, 3471, 3476 |
| Bse1I | ACTGG | 2 cut(s) | 141, 1860 |
| Bse21I | CCTNAGG | 1 cut(s) | 654 |
| Bse3DI | GCAATG | 2 cut(s) | 581, 2037 |
| Bse8I | GATNNNNATC | 2 cut(s) | 942, 979 |
| BseAI | TCCGGA | 2 cut(s) | 205, 3076 |
| BseBI | CCWGG | 6 cut(s) | 2310, 2422, 3009, 3186, 3275, 3471 |
| BseDI | CCNNGG | 6 cut(s) | 315, 1137, 1183, 2531, 3185, 3470 |
| BseJI | GATNNNNATC | 2 cut(s) | 942, 979 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 136, 720, 1142, 1888, 2174, 3229, 3471, 3476 |
| BseMI | GCAATG | 2 cut(s) | 581, 2037 |
| BseMII | CTCAG | 2 cut(s) | 645, 2951 |
| BseNI | ACTGG | 2 cut(s) | 141, 1860 |
| BseRI | GAGGAG | 2 cut(s) | 1568, 3473 |
| BseXI | GCAGC | 5 cut(s) | 402, 1581, 2135, 3057, 3275 |
| BseYI | CCCAGC | 1 cut(s) | 105 |
| BsgI | GTGCAG | 1 cut(s) | 1466 |
| Bsh1236I | CGCG | 4 cut(s) | 132, 3314, 3316, 3323 |
| BshFI | GGCC | 9 cut(s) | 482, 1077, 1160, 1758, 1837, 2262, 2933, 3125, 3464 |
| BshNI | GGYRCC | 1 cut(s) | 2312 |
| BsiHKAI | GWGCWC | 5 cut(s) | 14, 213, 876, 1038, 1104 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1136, 2126 |
| BsiSI | CCGG | 5 cut(s) | 206, 1560, 1882, 2741, 3077 |
| BslFI | GGGAC | 1 cut(s) | 2230 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 136, 720, 1142, 1888, 2174, 3229, 3471, 3476 |
| BsmAI | GTCTC | 5 cut(s) | 1949, 2300, 2340, 2393, 2628 |
| BsmBI | CGTCTC | 1 cut(s) | 2628 |
| BsmFI | GGGAC | 1 cut(s) | 2230 |
| BsmI | GAATGC | 2 cut(s) | 1361, 1700 |
| BsnI | GGCC | 9 cut(s) | 482, 1077, 1160, 1758, 1837, 2262, 2933, 3125, 3464 |
| Bso31I | GGTCTC | 1 cut(s) | 1949 |
| BsoBI | CYCGRG | 2 cut(s) | 1136, 2126 |
| Bsp1286I | GDGCHC | 7 cut(s) | 14, 213, 876, 1038, 1104, 1560, 3373 |
| Bsp13I | TCCGGA | 2 cut(s) | 205, 3076 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 411 |
| Bsp19I | CCATGG | 1 cut(s) | 315 |
| BspANI | GGCC | 9 cut(s) | 482, 1077, 1160, 1758, 1837, 2262, 2933, 3125, 3464 |
| BspCNI | CTCAG | 2 cut(s) | 646, 2950 |
| BspEI | TCCGGA | 2 cut(s) | 205, 3076 |
| BspFNI | CGCG | 4 cut(s) | 132, 3314, 3316, 3323 |
| BspHI | TCATGA | 2 cut(s) | 1608, 3354 |
| BspLI | GGNNCC | 6 cut(s) | 363, 1557, 1759, 2218, 2314, 3220 |
| BspOI | GCTAGC | 1 cut(s) | 1073 |
| BspPI | GGATC | 8 cut(s) | 356, 369, 1277, 1935, 2449, 2751, 3087, 3131 |
| BspT107I | GGYRCC | 1 cut(s) | 2312 |
| BspTI | CTTAAG | 1 cut(s) | 2372 |
| BspTNI | GGTCTC | 1 cut(s) | 1949 |
| BsrBI | CCGCTC | 1 cut(s) | 2936 |
| BsrDI | GCAATG | 2 cut(s) | 581, 2037 |
| BsrI | ACTGG | 2 cut(s) | 141, 1860 |
| BssECI | CCNNGG | 6 cut(s) | 315, 1137, 1183, 2531, 3185, 3470 |
| BssNI | GRCGYC | 2 cut(s) | 72, 402 |
| BssSI | CACGAG | 3 cut(s) | 1548, 3261, 3283 |
| BssT1I | CCWWGG | 3 cut(s) | 315, 1183, 2531 |
| Bst2BI | CACGAG | 3 cut(s) | 1548, 3261, 3283 |
| Bst2UI | CCWGG | 6 cut(s) | 2310, 2422, 3009, 3186, 3275, 3471 |
| Bst4CI | ACNGT | 7 cut(s) | 1088, 1647, 2015, 2064, 2544, 2863, 3064 |
| Bst6I | CTCTTC | 3 cut(s) | 1662, 1824, 3353 |
| BstACI | GRCGYC | 2 cut(s) | 72, 402 |
| BstAFI | CTTAAG | 1 cut(s) | 2372 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2682 |
| BstC8I | GCNNGC | 8 cut(s) | 150, 1071, 1075, 1116, 1158, 1525, 2418, 2618 |
| BstDEI | CTNAG | 7 cut(s) | 411, 654, 783, 1931, 2691, 2921, 2937 |
| BstDSI | CCRYGG | 1 cut(s) | 315 |
| BstFNI | CGCG | 4 cut(s) | 132, 3314, 3316, 3323 |
| BstH2I | RGCGCY | 1 cut(s) | 222 |
| BstHHI | GCGC | 3 cut(s) | 221, 1324, 3316 |
| BstMAI | GTCTC | 5 cut(s) | 1949, 2300, 2340, 2393, 2628 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 2422, 2478, 2682, 3320 |
| BstNI | CCWGG | 6 cut(s) | 2310, 2422, 3009, 3186, 3275, 3471 |
| BstNSI | RCATGY | 2 cut(s) | 1118, 1527 |
| BstSCI | CCNGG | 7 cut(s) | 1558, 2308, 2420, 3007, 3184, 3273, 3469 |
| BstSFI | CTRYAG | 1 cut(s) | 804 |
| BstUI | CGCG | 4 cut(s) | 132, 3314, 3316, 3323 |
| BstV1I | GCAGC | 5 cut(s) | 402, 1581, 2135, 3057, 3275 |
| BstV2I | GAAGAC | 5 cut(s) | 67, 102, 1903, 2197, 2657 |
| BstX2I | RGATCY | 5 cut(s) | 361, 1234, 1927, 2743, 3136 |
| BstYI | RGATCY | 5 cut(s) | 361, 1234, 1927, 2743, 3136 |
| Bsu36I | CCTNAGG | 1 cut(s) | 654 |
| BsuI | GTATCC | 2 cut(s) | 1815, 3271 |
| BsuRI | GGCC | 9 cut(s) | 482, 1077, 1160, 1758, 1837, 2262, 2933, 3125, 3464 |
| BtgI | CCRYGG | 1 cut(s) | 315 |
| BtgZI | GCGATG | 2 cut(s) | 2985, 3165 |
| BtsI | GCAGTG | 1 cut(s) | 2049 |
| BtsIMutI | CAGTG | 2 cut(s) | 436, 2049 |
| Cac8I | GCNNGC | 8 cut(s) | 150, 1071, 1075, 1116, 1158, 1525, 2418, 2618 |
| CaiI | CAGNNNCTG | 2 cut(s) | 593, 2507 |
| CciI | TCATGA | 2 cut(s) | 1608, 3354 |
| CfoI | GCGC | 3 cut(s) | 221, 1324, 3316 |
| Cfr13I | GGNCC | 6 cut(s) | 1075, 1757, 1835, 2026, 2217, 3479 |
| CseI | GACGC | 5 cut(s) | 410, 557, 1250, 2627, 3320 |
| Csp6I | GTAC | 6 cut(s) | 730, 801, 1511, 2313, 3195, 3382 |
| CviQI | GTAC | 6 cut(s) | 730, 801, 1511, 2313, 3195, 3382 |
| DdeI | CTNAG | 7 cut(s) | 411, 654, 783, 1931, 2691, 2921, 2937 |
| DraI | TTTAAA | 4 cut(s) | 2326, 2488, 3166, 3526 |
| DraIII | CACNNNGTG | 1 cut(s) | 282 |
| EaeI | YGGCCR | 4 cut(s) | 480, 1158, 2931, 3123 |
| Eam1104I | CTCTTC | 3 cut(s) | 1662, 1824, 3353 |
| EarI | CTCTTC | 3 cut(s) | 1662, 1824, 3353 |
| Ecl136II | GAGCTC | 2 cut(s) | 211, 1102 |
| Eco130I | CCWWGG | 3 cut(s) | 315, 1183, 2531 |
| Eco24I | GRGCYC | 4 cut(s) | 213, 1104, 1560, 3373 |
| Eco31I | GGTCTC | 1 cut(s) | 1949 |
| Eco47I | GGWCC | 3 cut(s) | 2026, 2217, 3479 |
| Eco47III | AGCGCT | 1 cut(s) | 220 |
| Eco53kI | GAGCTC | 2 cut(s) | 211, 1102 |
| Eco57I | CTGAAG | 2 cut(s) | 615, 2351 |
| Eco81I | CCTNAGG | 1 cut(s) | 654 |
| Eco88I | CYCGRG | 2 cut(s) | 1136, 2126 |
| EcoICRI | GAGCTC | 2 cut(s) | 211, 1102 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1757 |
| EcoRI | GAATTC | 2 cut(s) | 336, 1275 |
| EcoRII | CCWGG | 6 cut(s) | 2308, 2420, 3007, 3184, 3273, 3469 |
| EcoT14I | CCWWGG | 3 cut(s) | 315, 1183, 2531 |
| EcoT22I | ATGCAT | 1 cut(s) | 1503 |
| EcoT38I | GRGCYC | 4 cut(s) | 213, 1104, 1560, 3373 |
| ErhI | CCWWGG | 3 cut(s) | 315, 1183, 2531 |
| Esp3I | CGTCTC | 1 cut(s) | 2628 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 870, 902 |
| FaqI | GGGAC | 1 cut(s) | 2230 |
| FauI | CCCGC | 2 cut(s) | 110, 1066 |
| FauNDI | CATATG | 1 cut(s) | 3213 |
| FbaI | TGATCA | 1 cut(s) | 433 |
| Fnu4HI | GCNGC | 8 cut(s) | 391, 1570, 1573, 2149, 2414, 2934, 3071, 3289 |
| FriOI | GRGCYC | 4 cut(s) | 213, 1104, 1560, 3373 |
| Fsp4HI | GCNGC | 8 cut(s) | 391, 1570, 1573, 2149, 2414, 2934, 3071, 3289 |
| GlaI | GCGC | 3 cut(s) | 220, 1323, 3315 |
| GluI | GCNGC | 8 cut(s) | 391, 1570, 1573, 2149, 2414, 2934, 3071, 3289 |
| GsaI | CCCAGC | 1 cut(s) | 109 |
| GsuI | CTGGAG | 3 cut(s) | 158, 1877, 2282 |
| HaeII | RGCGCY | 1 cut(s) | 222 |
| HaeIII | GGCC | 9 cut(s) | 482, 1077, 1160, 1758, 1837, 2262, 2933, 3125, 3464 |
| HapII | CCGG | 5 cut(s) | 206, 1560, 1882, 2741, 3077 |
| HgaI | GACGC | 5 cut(s) | 410, 557, 1250, 2627, 3320 |
| HhaI | GCGC | 3 cut(s) | 221, 1324, 3316 |
| Hin1I | GRCGYC | 2 cut(s) | 72, 402 |
| Hin6I | GCGC | 3 cut(s) | 219, 1322, 3314 |
| HinP1I | GCGC | 3 cut(s) | 219, 1322, 3314 |
| HindIII | AAGCTT | 4 cut(s) | 465, 2054, 2369, 2693 |
| HpaII | CCGG | 5 cut(s) | 206, 1560, 1882, 2741, 3077 |
| HphI | GGTGA | 5 cut(s) | 42, 104, 249, 1004, 2824 |
| Hpy166II | GTNNAC | 3 cut(s) | 730, 1655, 2047 |
| Hpy8I | GTNNAC | 3 cut(s) | 730, 1655, 2047 |
| Hpy99I | CGWCG | 4 cut(s) | 74, 374, 2603, 3314 |
| HpyCH4III | ACNGT | 7 cut(s) | 1088, 1647, 2015, 2064, 2544, 2863, 3064 |
| HpyCH4IV | ACGT | 4 cut(s) | 72, 372, 550, 1030 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 2422, 2478, 2682, 3320 |
| HpyF3I | CTNAG | 7 cut(s) | 411, 654, 783, 1931, 2691, 2921, 2937 |
| HpySE526I | ACGT | 4 cut(s) | 72, 372, 550, 1030 |
| Hsp92I | GRCGYC | 2 cut(s) | 72, 402 |
| HspAI | GCGC | 3 cut(s) | 219, 1322, 3314 |
| Kpn2I | TCCGGA | 2 cut(s) | 205, 3076 |
| KpnI | GGTACC | 1 cut(s) | 2316 |
| Ksp22I | TGATCA | 1 cut(s) | 433 |
| LmnI | GCTCC | 5 cut(s) | 191, 208, 655, 1555, 3067 |
| Lsp1109I | GCAGC | 5 cut(s) | 402, 1581, 2135, 3057, 3275 |
| LweI | GCATC | 9 cut(s) | 490, 1309, 1488, 1698, 1851, 2219, 2351, 2708, 2952 |
| MaeII | ACGT | 4 cut(s) | 72, 372, 550, 1030 |
| MaeIII | GTNAC | 7 cut(s) | 950, 992, 1012, 1263, 2009, 3317, 3449 |
| MbiI | CCGCTC | 1 cut(s) | 2936 |
| MfeI | CAATTG | 4 cut(s) | 2244, 2866, 3489, 3495 |
| MflI | RGATCY | 5 cut(s) | 361, 1234, 1927, 2743, 3136 |
| MhlI | GDGCHC | 7 cut(s) | 14, 213, 876, 1038, 1104, 1560, 3373 |
| MlsI | TGGCCA | 3 cut(s) | 482, 1160, 3125 |
| MluI | ACGCGT | 1 cut(s) | 3321 |
| MluNI | TGGCCA | 3 cut(s) | 482, 1160, 3125 |
| MlyI | GAGTC | 6 cut(s) | 320, 1271, 2506, 3445, 3446, 3525 |
| MmeI | TCCRAC | 5 cut(s) | 41, 393, 589, 1310, 1359 |
| Mox20I | TGGCCA | 3 cut(s) | 482, 1160, 3125 |
| Mph1103I | ATGCAT | 1 cut(s) | 1503 |
| MroI | TCCGGA | 2 cut(s) | 205, 3076 |
| MroXI | GAANNNNTTC | 3 cut(s) | 161, 1533, 2911 |
| MscI | TGGCCA | 3 cut(s) | 482, 1160, 3125 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1488, 1587, 2042 |
| Msp20I | TGGCCA | 3 cut(s) | 482, 1160, 3125 |
| MspA1I | CMGCKG | 2 cut(s) | 105, 1826 |
| MspCI | CTTAAG | 1 cut(s) | 2372 |
| MspI | CCGG | 5 cut(s) | 206, 1560, 1882, 2741, 3077 |
| MspR9I | CCNGG | 7 cut(s) | 1560, 2310, 2422, 3009, 3186, 3275, 3471 |
| MunI | CAATTG | 4 cut(s) | 2244, 2866, 3489, 3495 |
| Mva1269I | GAATGC | 2 cut(s) | 1361, 1700 |
| MvaI | CCWGG | 6 cut(s) | 2310, 2422, 3009, 3186, 3275, 3471 |
| MvnI | CGCG | 4 cut(s) | 132, 3314, 3316, 3323 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 2422, 2478, 2682, 3320 |
| NciI | CCSGG | 1 cut(s) | 1560 |
| NcoI | CCATGG | 1 cut(s) | 315 |
| NdeI | CATATG | 1 cut(s) | 3213 |
| NheI | GCTAGC | 1 cut(s) | 1069 |
| NlaIV | GGNNCC | 6 cut(s) | 363, 1557, 1759, 2218, 2314, 3220 |
| NmeAIII | GCCGAG | 1 cut(s) | 3490 |
| NmuCI | GTSAC | 5 cut(s) | 950, 992, 1263, 2009, 3449 |
| NsiI | ATGCAT | 1 cut(s) | 1503 |
| NspI | RCATGY | 2 cut(s) | 1118, 1527 |
| PaeI | GCATGC | 2 cut(s) | 1118, 1527 |
| PaeR7I | CTCGAG | 1 cut(s) | 2126 |
| PagI | TCATGA | 2 cut(s) | 1608, 3354 |
| PctI | GAATGC | 2 cut(s) | 1361, 1700 |
| PdmI | GAANNNNTTC | 3 cut(s) | 161, 1533, 2911 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2174, 3229 |
| PfoI | TCCNGGA | 2 cut(s) | 3007, 3273 |
| PkrI | GCNGC | 8 cut(s) | 392, 1571, 1574, 2150, 2415, 2935, 3072, 3290 |
| PleI | GAGTC | 6 cut(s) | 319, 1270, 2505, 3444, 3446, 3525 |
| PpsI | GAGTC | 6 cut(s) | 319, 1270, 2505, 3444, 3446, 3525 |
| PsiI | TTATAA | 2 cut(s) | 513, 2279 |
| Psp124BI | GAGCTC | 2 cut(s) | 213, 1104 |
| Psp6I | CCWGG | 6 cut(s) | 2308, 2420, 3007, 3184, 3273, 3469 |
| PspFI | CCCAGC | 1 cut(s) | 105 |
| PspGI | CCWGG | 6 cut(s) | 2308, 2420, 3007, 3184, 3273, 3469 |
| PspN4I | GGNNCC | 6 cut(s) | 363, 1557, 1759, 2218, 2314, 3220 |
| PspPI | GGNCC | 6 cut(s) | 1075, 1757, 1835, 2026, 2217, 3479 |
| PstNI | CAGNNNCTG | 2 cut(s) | 593, 2507 |
| PsuI | RGATCY | 5 cut(s) | 361, 1234, 1927, 2743, 3136 |
| PvuII | CAGCTG | 1 cut(s) | 1826 |
| RsaI | GTAC | 6 cut(s) | 731, 802, 1512, 2314, 3196, 3383 |
| RsaNI | GTAC | 6 cut(s) | 730, 801, 1511, 2313, 3195, 3382 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1488, 1587, 2042 |
| SacI | GAGCTC | 2 cut(s) | 213, 1104 |
| SatI | GCNGC | 8 cut(s) | 391, 1570, 1573, 2149, 2414, 2934, 3071, 3289 |
| Sau96I | GGNCC | 6 cut(s) | 1075, 1757, 1835, 2026, 2217, 3479 |
| SchI | GAGTC | 6 cut(s) | 320, 1271, 2506, 3445, 3446, 3525 |
| ScrFI | CCNGG | 7 cut(s) | 1560, 2310, 2422, 3009, 3186, 3275, 3471 |
| SduI | GDGCHC | 7 cut(s) | 14, 213, 876, 1038, 1104, 1560, 3373 |
| SfaNI | GCATC | 9 cut(s) | 490, 1309, 1488, 1698, 1851, 2219, 2351, 2708, 2952 |
| SfcI | CTRYAG | 1 cut(s) | 804 |
| Sfr274I | CTCGAG | 1 cut(s) | 2126 |
| SinI | GGWCC | 3 cut(s) | 2026, 2217, 3479 |
| SlaI | CTCGAG | 1 cut(s) | 2126 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1488, 1587, 2042 |
| SmlI | CTYRAG | 9 cut(s) | 79, 214, 1097, 1451, 1985, 2126, 2372, 3149, 3533 |
| SmoI | CTYRAG | 9 cut(s) | 79, 214, 1097, 1451, 1985, 2126, 2372, 3149, 3533 |
| SphI | GCATGC | 2 cut(s) | 1118, 1527 |
| SspI | AATATT | 3 cut(s) | 1412, 2910, 3446 |
| SstI | GAGCTC | 2 cut(s) | 213, 1104 |
| StyD4I | CCNGG | 7 cut(s) | 1558, 2308, 2420, 3007, 3184, 3273, 3469 |
| StyI | CCWWGG | 3 cut(s) | 315, 1183, 2531 |
| TaaI | ACNGT | 7 cut(s) | 1088, 1647, 2015, 2064, 2544, 2863, 3064 |
| TaiI | ACGT | 4 cut(s) | 75, 375, 553, 1033 |
| TauI | GCSGC | 3 cut(s) | 1575, 2416, 2936 |
| TscAI | CASTG | 2 cut(s) | 436, 2049 |
| TseFI | GTSAC | 5 cut(s) | 950, 992, 1263, 2009, 3449 |
| TseI | GCWGC | 5 cut(s) | 390, 1569, 2148, 3070, 3288 |
| Tsp45I | GTSAC | 5 cut(s) | 950, 992, 1263, 2009, 3449 |
| TspGWI | ACGGA | 2 cut(s) | 1011, 2976 |
| TspRI | CASTG | 2 cut(s) | 436, 2049 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2174, 3229 |
| Vha464I | CTTAAG | 1 cut(s) | 2372 |
| VpaK11BI | GGWCC | 3 cut(s) | 2026, 2217, 3479 |
| XbaI | TCTAGA | 3 cut(s) | 1237, 2563, 2626 |
| XceI | RCATGY | 2 cut(s) | 1118, 1527 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 36, 283, 2306 |
| XhoI | CTCGAG | 1 cut(s) | 2126 |
| XmnI | GAANNNNTTC | 3 cut(s) | 161, 1533, 2911 |
| ZraI | GACGTC | 1 cut(s) | 73 |
| Zsp2I | ATGCAT | 1 cut(s) | 1503 |