Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001057

Physical Location & Seq

Genomic Coordinates Forward (+)

18178123 .. 18179936

Gene Structure 1814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G162900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGAGCACCTGTTGGGCCTTCTTAGAGTTCGAGTGCAGAAGGGGGTAAACCTTGCTATTAGAGATGTCACTGCCAGAACCAGCGATCCTTATGTTGTCATCAAAATGGGCAAGCAGAAGTTAAAGACTCGTGTAGTGAAGAATAGTACCAATCCCGAGTGGAATGAAGATTTAACACTTTCAATTGCAGATCCAACTCTTCCAGTTAACATTCATGTGTATGACAAAGACACATTTACTCTTGATGACAAAATGGGGGATGCTGAGTTCGAGATTGGTCCGTTTCTTGAAGCGTTACGGATGCGGGTGCAAGGCGTACCAAGCGGAACCGTACTTTCCAGAGTGCAACCGAGCAGGCAAAACTGCCTAGCTGAAGAGAGCTGCATCATCTATACTGATGGCCAAGTTGTCCAGAACATGTGTATCAGACTGAGAAATGTGGAGAGAGGGGAACTGGAACTCCAGTTACAGTGGATTGATATTCCTGGTTCTAGGGGTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0005096 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0008047 GO:0008150 GO:0009611 GO:0009628 GO:0009651 GO:0030234 GO:0030695 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043085 GO:0043087 GO:0043547 GO:0043900 GO:0043902 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0047484 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050790 GO:0050896 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0080134 GO:0098772 GO:1900424 GO:1900426 GO:1901000 GO:1901002 GO:1902477 GO:1902479

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

168

Amino Acids

18.87

Weight (kDa)

6.14

Isoelectric Point (pI)

39.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70810 AT5G37740 AT5G37740
fragaria_vesca	FvH4_1g27320 FvH4_1g28670 FvH4_1g28680 FvH4_1g28690 FvH4_2g18820
malus_domestica	MD09G1278700.v1.1 MD09G1278800.v1.1 MD09G1278900.v1.1 MD09G1279000.v1.1 MD17G1260900.v1.1
prunus_persica	Prupe.3G162700_v2.0.a1 Prupe.3G162800_v2.0.a1 Prupe.3G162900_v2.0.a1 Prupe.3G162900_v2.0.a1
pyrus_communis	pycom09g17860 pycom09g17870 pycom09g17880 pycom09g17890 pycom17g26160
rosa_chinensis	RchiOBHm_Chr3g0492961 RchiOBHm_Chr3g0492971 RchiOBHm_Chr3g0492991
rosa_laevigata	RLG00000022734 RLG00000022736 RLG00000022737 RLG00000022739 RLG00000022740 RLG00000022741
rosa_multiflora	Rmu_co8406109.1_g000001 Rmu_sc0000395.1_g000015 Rmu_sc0000395.1_g000023 Rmu_sc0000395.1_g000029 Rmu_sc0008956.1_g000004 Rmu_sc0016690.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391990 Rroxscaffold_6G00392000 Rroxscaffold_6G00392010
rosa_rugosa	Rorug03G0256700 Rorug03G0257800 Rorug03G0258000 Rorug03G0258400 Rorug03G0258500 Rorug03G0258500
rosa_samantha	Rh3AG306200 Rh3AG307300 Rh3AG307500 Rh3BG342700 Rh3BG342800 Rh3BG342900 Rh3CG340000 Rh3CG340200 Rh3DG342000 Rh3DG342200 Rh3DG342400
rosa_wichuraiana	Rw3G027020 Rw3G027030 Rw3G027040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	304, 324
AclWI	GGATC	2 cut(s)	80, 185
AcoI	YGGCCR	1 cut(s)	400
AcuI	CTGAAG	1 cut(s)	393
AfaI	GTAC	3 cut(s)	148, 318, 333
AflIII	ACRYGT	1 cut(s)	417
AgsI	TTSAA	2 cut(s)	183, 290
AjnI	CCWGG	1 cut(s)	484
AloI	GAACNNNNNNTCC	6 cut(s)	70, 102, 251, 283, 444, 476
AluBI	AGCT	2 cut(s)	371, 381
AluI	AGCT	2 cut(s)	371, 381
Alw21I	GWGCWC	1 cut(s)	9
AlwI	GGATC	2 cut(s)	80, 185
Ama87I	CYCGRG	1 cut(s)	155
AoxI	GGCC	2 cut(s)	16, 400
ApeKI	GCWGC	1 cut(s)	381
AspS9I	GGNCC	2 cut(s)	16, 278
AvaI	CYCGRG	1 cut(s)	155
AvaII	GGWCC	1 cut(s)	278
BaeI	ACNNNNGTAYC	2 cut(s)	406, 439
BalI	TGGCCA	1 cut(s)	402
BauI	CACGAG	1 cut(s)	129
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	1 cut(s)	368
BccI	CCATC	1 cut(s)	392
BciT130I	CCWGG	1 cut(s)	486
BfaI	CTAG	2 cut(s)	368, 492
BisI	GCNGC	1 cut(s)	382
BlsI	GCNGC	1 cut(s)	383
Bme1390I	CCNGG	1 cut(s)	486
Bme18I	GGWCC	1 cut(s)	278
BmeT110I	CYCGRG	1 cut(s)	155
BmgT120I	GGNCC	2 cut(s)	16, 278
BmiI	GGNNCC	1 cut(s)	328
BmrFI	CCNGG	1 cut(s)	486
BmsI	GCATC	3 cut(s)	250, 291, 393
BpmI	CTGGAG	1 cut(s)	446
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 444, 474
Bse1I	ACTGG	3 cut(s)	203, 459, 463
BseBI	CCWGG	1 cut(s)	486
BseGI	GGATG	2 cut(s)	265, 306
BseMII	CTCAG	2 cut(s)	255, 422
BseNI	ACTGG	3 cut(s)	203, 459, 463
BseXI	GCAGC	1 cut(s)	368
BsgI	GTGCAG	1 cut(s)	56
BshFI	GGCC	2 cut(s)	18, 402
BsiHKAI	GWGCWC	1 cut(s)	9
BsiHKCI	CYCGRG	1 cut(s)	155
BsnI	GGCC	2 cut(s)	18, 402
BsoBI	CYCGRG	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	2 cut(s)	85, 190
BspACI	CCGC	2 cut(s)	304, 324
BspANI	GGCC	2 cut(s)	18, 402
BspCNI	CTCAG	2 cut(s)	256, 423
BspLI	GGNNCC	1 cut(s)	328
BspPI	GGATC	2 cut(s)	80, 185
BsrI	ACTGG	3 cut(s)	203, 459, 463
BssMI	GATC	2 cut(s)	85, 190
BssSI	CACGAG	1 cut(s)	129
Bst2BI	CACGAG	1 cut(s)	129
Bst2UI	CCWGG	1 cut(s)	486
Bst4CI	ACNGT	2 cut(s)	331, 471
Bst6I	CTCTTC	2 cut(s)	204, 369
BstC8I	GCNNGC	2 cut(s)	113, 356
BstDEI	CTNAG	3 cut(s)	23, 264, 431
BstF5I	GGATG	2 cut(s)	265, 306
BstKTI	GATC	2 cut(s)	88, 193
BstMBI	GATC	2 cut(s)	85, 190
BstMWI	GCNNNNNNNGC	1 cut(s)	321
BstNI	CCWGG	1 cut(s)	486
BstNSI	RCATGY	1 cut(s)	421
BstSCI	CCNGG	1 cut(s)	484
BstV1I	GCAGC	1 cut(s)	368
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
BsuRI	GGCC	2 cut(s)	18, 402
BtsCI	GGATG	2 cut(s)	265, 306
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	2 cut(s)	69, 476
Cac8I	GCNNGC	2 cut(s)	113, 356
Cfr13I	GGNCC	2 cut(s)	16, 278
Csp6I	GTAC	3 cut(s)	147, 317, 332
CviAII	CATG	2 cut(s)	215, 418
CviJI	RGCY	4 cut(s)	18, 371, 381, 402
CviKI_1	RGCY	4 cut(s)	18, 371, 381, 402
CviQI	GTAC	3 cut(s)	147, 317, 332
DdeI	CTNAG	3 cut(s)	23, 264, 431
DpnI	GATC	2 cut(s)	87, 192
DpnII	GATC	2 cut(s)	85, 190
EaeI	YGGCCR	1 cut(s)	400
Eam1104I	CTCTTC	2 cut(s)	204, 369
EarI	CTCTTC	2 cut(s)	204, 369
Eco47I	GGWCC	1 cut(s)	278
Eco57I	CTGAAG	1 cut(s)	393
Eco88I	CYCGRG	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	484
FaeI	CATG	2 cut(s)	218, 421
FaiI	YATR	5 cut(s)	93, 216, 222, 393, 419
FatI	CATG	2 cut(s)	214, 417
FauI	CCCGC	1 cut(s)	297
Fnu4HI	GCNGC	1 cut(s)	382
FokI	GGATG	2 cut(s)	272, 313
Fsp4HI	GCNGC	1 cut(s)	382
FspBI	CTAG	2 cut(s)	368, 492
GluI	GCNGC	1 cut(s)	382
GsuI	CTGGAG	1 cut(s)	446
HaeIII	GGCC	2 cut(s)	18, 402
Hin1II	CATG	2 cut(s)	218, 421
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HinfI	GANTC	1 cut(s)	127
HpaI	GTTAAC	1 cut(s)	208
Hpy166II	GTNNAC	2 cut(s)	49, 208
Hpy188I	TCNGA	1 cut(s)	428
Hpy188III	TCNNGA	6 cut(s)	155, 242, 271, 287, 339, 412
Hpy8I	GTNNAC	2 cut(s)	49, 208
HpyAV	CCTTC	2 cut(s)	29, 34
HpyCH4III	ACNGT	2 cut(s)	331, 471
HpyCH4V	TGCA	5 cut(s)	37, 188, 310, 346, 384
HpyF10VI	GCNNNNNNNGC	1 cut(s)	321
HpyF3I	CTNAG	3 cut(s)	23, 264, 431
Hsp92II	CATG	2 cut(s)	218, 421
KspAI	GTTAAC	1 cut(s)	208
Kzo9I	GATC	2 cut(s)	85, 190
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	1 cut(s)	368
LweI	GCATC	3 cut(s)	250, 291, 393
MaeI	CTAG	2 cut(s)	368, 492
MaeIII	GTNAC	3 cut(s)	67, 294, 465
MalI	GATC	2 cut(s)	87, 192
MboI	GATC	2 cut(s)	85, 190
MboII	GAAGA	4 cut(s)	151, 179, 191, 386
MfeI	CAATTG	1 cut(s)	183
MflI	RGATCY	1 cut(s)	190
MhlI	GDGCHC	1 cut(s)	9
MlsI	TGGCCA	1 cut(s)	402
MluCI	AATT	1 cut(s)	183
MluNI	TGGCCA	1 cut(s)	402
MlyI	GAGTC	1 cut(s)	121
MmeI	TCCRAC	1 cut(s)	218
MnlI	CCTC	1 cut(s)	440
Mox20I	TGGCCA	1 cut(s)	402
MscI	TGGCCA	1 cut(s)	402
MseI	TTAA	3 cut(s)	122, 173, 207
MslI	CAYNNNNRTG	3 cut(s)	104, 215, 219
Msp20I	TGGCCA	1 cut(s)	402
MspR9I	CCNGG	1 cut(s)	486
MunI	CAATTG	1 cut(s)	183
MvaI	CCWGG	1 cut(s)	486
MwoI	GCNNNNNNNGC	1 cut(s)	321
NdeII	GATC	2 cut(s)	85, 190
NlaIII	CATG	2 cut(s)	218, 421
NlaIV	GGNNCC	1 cut(s)	328
NmuCI	GTSAC	1 cut(s)	67
NspI	RCATGY	1 cut(s)	421
PciI	ACATGT	1 cut(s)	417
PkrI	GCNGC	1 cut(s)	383
PleI	GAGTC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	121
PscI	ACATGT	1 cut(s)	417
Psp6I	CCWGG	1 cut(s)	484
PspGI	CCWGG	1 cut(s)	484
PspN4I	GGNNCC	1 cut(s)	328
PspPI	GGNCC	2 cut(s)	16, 278
PsrI	GAACNNNNNNTAC	2 cut(s)	450, 482
PsuI	RGATCY	1 cut(s)	190
RsaI	GTAC	3 cut(s)	148, 318, 333
RsaNI	GTAC	3 cut(s)	147, 317, 332
RseI	CAYNNNNRTG	3 cut(s)	104, 215, 219
SaqAI	TTAA	3 cut(s)	122, 173, 207
SatI	GCNGC	1 cut(s)	382
Sau3AI	GATC	2 cut(s)	85, 190
Sau96I	GGNCC	2 cut(s)	16, 278
SchI	GAGTC	1 cut(s)	121
ScrFI	CCNGG	1 cut(s)	486
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	4 cut(s)	12, 54, 373, 383
SfaNI	GCATC	3 cut(s)	250, 291, 393
SinI	GGWCC	1 cut(s)	278
SmiMI	CAYNNNNRTG	3 cut(s)	104, 215, 219
Sse9I	AATT	1 cut(s)	183
SsiI	CCGC	2 cut(s)	304, 324
SspMI	CTAG	2 cut(s)	368, 492
StyD4I	CCNGG	1 cut(s)	484
TaaI	ACNGT	2 cut(s)	331, 471
TaqI	TCGA	2 cut(s)	31, 270
TasI	AATT	1 cut(s)	183
Tru1I	TTAA	3 cut(s)	122, 173, 207
Tru9I	TTAA	3 cut(s)	122, 173, 207
TscAI	CASTG	2 cut(s)	76, 476
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	1 cut(s)	381
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	2 cut(s)	180, 203
TspGWI	ACGGA	2 cut(s)	270, 313
TspRI	CASTG	2 cut(s)	76, 476
VpaK11BI	GGWCC	1 cut(s)	278
XceI	RCATGY	1 cut(s)	421
XspI	CTAG	2 cut(s)	368, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.