FvH4_1g28680

GTPase activator activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0001057
Physical Location & Seq
Reverse (-)
20975174 .. 20977063
1890 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g28680.t1

Sequence Viewer

Length: 498 bp
ATGGAGCATCTGTTGGGACTTCTTAGAATTCGTGTCCAGAGAGGAAGAAACCTTGCTGTTAGAGATGTCAGAAGCAGTGATCCTTATGTTGTTGTCAACATGGGCAAGCAGAAATTGAAGACTCGTGTAGTGAAGAAGAGCGTCAATCCCGAGTGGAACGAAGATTTAACTCTTTCAATTTCCGATTCAAGTCATCCAATCCATATTGCTGTGTATGACAAAGACACATTTACTCAGGATGACAAGATGGGGGATGCTGAAATTGAAATCGGTCCATTTCTAGAAGCCATACGGATGCGCTTGGATGGGGTTGCAAATGGAATGGTAGCTTCAAGAGTAGAACCAAGCAAAGAAAACTGCCTAGCTGAACAGAGCTGCATCATCTATAGTGATGGCAATATTATCCAGAACATGACTGTCAGACTCAGAAATGTGGAGAGTGGAGAAGTAGAACTCCAGTTACAATGGATAAATATTCCAGGCTCTCGTGGTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002376 GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004812 GO:0004818 GO:0004827 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006417 GO:0006418 GO:0006424 GO:0006433 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0008047 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009059 GO:0009611 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010243 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0010876 GO:0015711 GO:0015718 GO:0015849 GO:0015908 GO:0015909 GO:0016020 GO:0016043 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0017148 GO:0019222 GO:0019538 GO:0019752 GO:0019899 GO:0022607 GO:0030234 GO:0030695 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0032268 GO:0032269 GO:0032868 GO:0032869 GO:0032870 GO:0032991 GO:0033036 GO:0034097 GO:0034248 GO:0034249 GO:0034341 GO:0034641 GO:0034645 GO:0034660 GO:0035613 GO:0042221 GO:0042802 GO:0042803 GO:0043038 GO:0043039 GO:0043043 GO:0043085 GO:0043087 GO:0043167 GO:0043169 GO:0043170 GO:0043434 GO:0043436 GO:0043547 GO:0043603 GO:0043604 GO:0043900 GO:0043902 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044539 GO:0045087 GO:0045088 GO:0045089 GO:0046483 GO:0046872 GO:0046914 GO:0046942 GO:0046983 GO:0047484 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051020 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051246 GO:0051248 GO:0051336 GO:0051345 GO:0051716 GO:0060255 GO:0060589 GO:0065003 GO:0065007 GO:0065009 GO:0070887 GO:0071310 GO:0071345 GO:0071346 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0097452 GO:0098772 GO:0140098 GO:0140101 GO:1900424 GO:1900426 GO:1901000 GO:1901002 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902477 GO:1902479 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
ko00220 ko00250 ko00260 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00220 map00250 map00260 map00630 map00710 map01100 map01110 map01120 map01130 map01200 map01210 map01230
Pfam Domains
Protein Families
C2

Protein Analysis

166

Amino Acids

18.59

Weight (kDa)

5.94

Isoelectric Point (pI)

51.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 6 - 92 1e-25 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 74
AcsI RAATTY 1 cut(s) 27
AgsI TTSAA 5 cut(s) 118, 177, 189, 266, 333
AjnI CCWGG 1 cut(s) 478
AluBI AGCT 3 cut(s) 329, 365, 375
AluI AGCT 3 cut(s) 329, 365, 375
AlwI GGATC 1 cut(s) 74
Ama87I CYCGRG 1 cut(s) 149
ApeKI GCWGC 1 cut(s) 375
ApoI RAATTY 1 cut(s) 27
AspLEI GCGC 1 cut(s) 300
AspS9I GGNCC 1 cut(s) 272
AvaI CYCGRG 1 cut(s) 149
AvaII GGWCC 1 cut(s) 272
BauI CACGAG 2 cut(s) 123, 486
BbsI GAAGAC 1 cut(s) 125
BbvI GCAGC 1 cut(s) 362
BccI CCATC 3 cut(s) 241, 299, 386
BciT130I CCWGG 1 cut(s) 480
BfaI CTAG 2 cut(s) 281, 362
BfmI CTRYAG 1 cut(s) 385
BisI GCNGC 1 cut(s) 376
BlsI GCNGC 1 cut(s) 377
Bme1390I CCNGG 1 cut(s) 480
Bme18I GGWCC 1 cut(s) 272
BmeT110I CYCGRG 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 272
BmrFI CCNGG 1 cut(s) 480
BmsI GCATC 4 cut(s) 16, 244, 285, 387
BpiI GAAGAC 1 cut(s) 125
BpmI CTGGAG 1 cut(s) 440
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bse1I ACTGG 1 cut(s) 457
BseBI CCWGG 1 cut(s) 480
BseGI GGATG 5 cut(s) 193, 244, 259, 300, 310
BseMII CTCAG 2 cut(s) 248, 439
BseNI ACTGG 1 cut(s) 457
BseXI GCAGC 1 cut(s) 362
BsiHKCI CYCGRG 1 cut(s) 149
BslFI GGGAC 1 cut(s) 30
BsmFI GGGAC 1 cut(s) 30
BsoBI CYCGRG 1 cut(s) 149
Bsp143I GATC 1 cut(s) 79
BspCNI CTCAG 2 cut(s) 247, 438
BspPI GGATC 1 cut(s) 74
BspQI GCTCTTC 1 cut(s) 131
BsrI ACTGG 1 cut(s) 457
BssMI GATC 1 cut(s) 79
BssSI CACGAG 2 cut(s) 123, 486
Bst2BI CACGAG 2 cut(s) 123, 486
Bst2UI CCWGG 1 cut(s) 480
Bst4CI ACNGT 1 cut(s) 418
Bst6I CTCTTC 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 107
BstDEI CTNAG 3 cut(s) 23, 234, 425
BstF5I GGATG 5 cut(s) 193, 244, 259, 300, 310
BstHHI GCGC 1 cut(s) 300
BstKTI GATC 1 cut(s) 82
BstMBI GATC 1 cut(s) 79
BstNI CCWGG 1 cut(s) 480
BstSCI CCNGG 1 cut(s) 478
BstSFI CTRYAG 1 cut(s) 385
BstV1I GCAGC 1 cut(s) 362
BstV2I GAAGAC 1 cut(s) 125
BtsCI GGATG 5 cut(s) 193, 244, 259, 300, 310
BtsI GCAGTG 1 cut(s) 82
BtsIMutI CAGTG 1 cut(s) 82
Cac8I GCNNGC 1 cut(s) 107
CfoI GCGC 1 cut(s) 300
Cfr13I GGNCC 1 cut(s) 272
CseI GACGC 1 cut(s) 130
CviAII CATG 2 cut(s) 100, 412
CviJI RGCY 5 cut(s) 287, 329, 365, 375, 483
CviKI_1 RGCY 5 cut(s) 287, 329, 365, 375, 483
DdeI CTNAG 3 cut(s) 23, 234, 425
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Eco47I GGWCC 1 cut(s) 272
Eco88I CYCGRG 1 cut(s) 149
EcoRI GAATTC 1 cut(s) 27
EcoRII CCWGG 1 cut(s) 478
FaeI CATG 2 cut(s) 103, 415
FaiI YATR 7 cut(s) 87, 101, 204, 216, 290, 387, 413
FaqI GGGAC 1 cut(s) 30
FatI CATG 2 cut(s) 99, 411
Fnu4HI GCNGC 1 cut(s) 376
FokI GGATG 5 cut(s) 180, 251, 266, 307, 317
Fsp4HI GCNGC 1 cut(s) 376
FspBI CTAG 2 cut(s) 281, 362
GlaI GCGC 1 cut(s) 299
GluI GCNGC 1 cut(s) 376
GsuI CTGGAG 1 cut(s) 440
HgaI GACGC 1 cut(s) 130
HhaI GCGC 1 cut(s) 300
Hin1II CATG 2 cut(s) 103, 415
Hin6I GCGC 1 cut(s) 298
HinP1I GCGC 1 cut(s) 298
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HinfI GANTC 3 cut(s) 121, 185, 423
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 4 cut(s) 71, 184, 422, 428
Hpy188III TCNNGA 6 cut(s) 37, 149, 236, 281, 333, 406
Hpy8I GTNNAC 1 cut(s) 97
HpyCH4III ACNGT 1 cut(s) 418
HpyCH4V TGCA 2 cut(s) 314, 378
HpyF3I CTNAG 3 cut(s) 23, 234, 425
Hsp92II CATG 2 cut(s) 103, 415
HspAI GCGC 1 cut(s) 298
Kzo9I GATC 1 cut(s) 79
LguI GCTCTTC 1 cut(s) 131
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 6 cut(s) 50, 221, 419, 465, 470, 492
Lsp1109I GCAGC 1 cut(s) 362
LweI GCATC 4 cut(s) 16, 244, 285, 387
MaeI CTAG 2 cut(s) 281, 362
MaeIII GTNAC 1 cut(s) 459
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MboII GAAGA 5 cut(s) 57, 130, 145, 148, 173
MluCI AATT 4 cut(s) 27, 113, 177, 261
MlyI GAGTC 2 cut(s) 115, 417
MnlI CCTC 1 cut(s) 35
MseI TTAA 1 cut(s) 167
MslI CAYNNNNRTG 1 cut(s) 293
MspR9I CCNGG 1 cut(s) 480
MvaI CCWGG 1 cut(s) 480
NdeII GATC 1 cut(s) 79
NlaIII CATG 2 cut(s) 103, 415
PciSI GCTCTTC 1 cut(s) 131
PfeI GAWTC 1 cut(s) 185
PkrI GCNGC 1 cut(s) 377
PleI GAGTC 2 cut(s) 115, 417
PpsI GAGTC 2 cut(s) 115, 417
Psp6I CCWGG 1 cut(s) 478
PspGI CCWGG 1 cut(s) 478
PspPI GGNCC 1 cut(s) 272
PsrI GAACNNNNNNTAC 2 cut(s) 444, 476
RseI CAYNNNNRTG 1 cut(s) 293
SapI GCTCTTC 1 cut(s) 131
SaqAI TTAA 1 cut(s) 167
SatI GCNGC 1 cut(s) 376
Sau3AI GATC 1 cut(s) 79
Sau96I GGNCC 1 cut(s) 272
SchI GAGTC 2 cut(s) 115, 417
ScrFI CCNGG 1 cut(s) 480
SetI ASST 4 cut(s) 54, 331, 367, 377
SfaNI GCATC 4 cut(s) 16, 244, 285, 387
SfcI CTRYAG 1 cut(s) 385
SinI GGWCC 1 cut(s) 272
SmiMI CAYNNNNRTG 1 cut(s) 293
Sse9I AATT 4 cut(s) 27, 113, 177, 261
SspI AATATT 2 cut(s) 400, 475
SspMI CTAG 2 cut(s) 281, 362
StyD4I CCNGG 1 cut(s) 478
TaaI ACNGT 1 cut(s) 418
TaqII GACCGA 1 cut(s) 260
TasI AATT 4 cut(s) 27, 113, 177, 261
TfiI GAWTC 1 cut(s) 185
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TscAI CASTG 1 cut(s) 82
TseI GCWGC 1 cut(s) 375
TspGWI ACGGA 1 cut(s) 307
TspRI CASTG 1 cut(s) 82
VpaK11BI GGWCC 1 cut(s) 272
XapI RAATTY 1 cut(s) 27
XbaI TCTAGA 1 cut(s) 280
XspI CTAG 2 cut(s) 281, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.