Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000395.1

Orthogroup ID

OG0001057

Physical Location & Seq

Genomic Coordinates Forward (+)

124830 .. 125890

Gene Structure 1061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000395.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atgttgggtctgttgagaattcatatccaaagaggagtgaaccttgccgtcagagacatgagaagcagcgacccttatctcattgtcagaatgggcaagcagaagctaaagactcgtgtagtgaagaagagcgtgaatcctgagtggaatgaacaattgactctttcaattgctgatccaaatcttccaatcctggtctctgtgtatgacaaggatacatttagttttgatgacaaaatgggggatgcagagtttgagattggtccattcattaaagccttgaagatgggtttccaaggccttgaagatggagccataatttctaaagtgcagatcaacaagcaaaactgtctagctgaagagagctgcattatttactccgaaggcaaacttgtacagaacatggttctcagactcagaaatgtggagtgcggggaagtggaactccaattgcagtggattgatgtacctagttctaggggtctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0008047 GO:0008150 GO:0008289 GO:0009611 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0023051 GO:0023056 GO:0030234 GO:0030695 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0043900 GO:0043902 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0080134 GO:0098772 GO:1900424 GO:1900426 GO:1901000 GO:1901002 GO:1901419 GO:1901421 GO:1902477 GO:1902479 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00260 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00220 map00250 map00260 map00630 map00710 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Protein Analysis

162

Amino Acids

18.34

Weight (kDa)

6.6

Isoelectric Point (pI)

49.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70810 AT5G37740 AT5G37740
fragaria_vesca	FvH4_1g27320 FvH4_1g28670 FvH4_1g28680 FvH4_1g28690 FvH4_2g18820
malus_domestica	MD09G1278700.v1.1 MD09G1278800.v1.1 MD09G1278900.v1.1 MD09G1279000.v1.1 MD17G1260900.v1.1
prunus_persica	Prupe.3G162700_v2.0.a1 Prupe.3G162800_v2.0.a1 Prupe.3G162900_v2.0.a1 Prupe.3G162900_v2.0.a1
pyrus_communis	pycom09g17860 pycom09g17870 pycom09g17880 pycom09g17890 pycom17g26160
rosa_chinensis	RchiOBHm_Chr3g0492961 RchiOBHm_Chr3g0492971 RchiOBHm_Chr3g0492991
rosa_laevigata	RLG00000022734 RLG00000022736 RLG00000022737 RLG00000022739 RLG00000022740 RLG00000022741
rosa_multiflora	Rmu_co8406109.1_g000001 Rmu_sc0000395.1_g000015 Rmu_sc0000395.1_g000023 Rmu_sc0000395.1_g000029 Rmu_sc0008956.1_g000004 Rmu_sc0016690.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391990 Rroxscaffold_6G00392000 Rroxscaffold_6G00392010
rosa_rugosa	Rorug03G0256700 Rorug03G0257800 Rorug03G0258000 Rorug03G0258400 Rorug03G0258500 Rorug03G0258500
rosa_samantha	Rh3AG306200 Rh3AG307300 Rh3AG307500 Rh3BG342700 Rh3BG342800 Rh3BG342900 Rh3CG340000 Rh3CG340200 Rh3DG342000 Rh3DG342200 Rh3DG342400
rosa_wichuraiana	Rw3G027020 Rw3G027030 Rw3G027040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	432
AclWI	GGATC	1 cut(s)	170
AcsI	RAATTY	1 cut(s)	18
AcuI	CTGAAG	1 cut(s)	378
AfaI	GTAC	2 cut(s)	396, 468
AgsI	TTSAA	3 cut(s)	168, 283, 305
AjnI	CCWGG	1 cut(s)	192
AluBI	AGCT	3 cut(s)	106, 356, 366
AluI	AGCT	3 cut(s)	106, 356, 366
Alw26I	GTCTC	2 cut(s)	48, 202
AlwI	GGATC	1 cut(s)	170
AoxI	GGCC	1 cut(s)	298
ApeKI	GCWGC	2 cut(s)	66, 366
ApoI	RAATTY	1 cut(s)	18
AspS9I	GGNCC	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	263
BauI	CACGAG	1 cut(s)	114
BbvI	GCAGC	2 cut(s)	78, 353
BccI	CCATC	2 cut(s)	280, 302
BceAI	ACGGC	1 cut(s)	32
BciT130I	CCWGG	1 cut(s)	194
BciVI	GTATCC	1 cut(s)	208
BcoDI	GTCTC	2 cut(s)	48, 202
BfaI	CTAG	3 cut(s)	353, 471, 477
BfuI	GTATCC	1 cut(s)	208
BisI	GCNGC	2 cut(s)	67, 367
BlsI	GCNGC	2 cut(s)	68, 368
Bme1390I	CCNGG	1 cut(s)	194
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	313
BmrFI	CCNGG	1 cut(s)	194
BmsI	GCATC	1 cut(s)	235
BsaBI	GATNNNNATC	1 cut(s)	180
BsaI	GGTCTC	1 cut(s)	202
BsaJI	CCNNGG	1 cut(s)	295
Bse8I	GATNNNNATC	1 cut(s)	180
BseBI	CCWGG	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	295
BseGI	GGATG	1 cut(s)	250
BseJI	GATNNNNATC	1 cut(s)	180
BseMII	CTCAG	3 cut(s)	132, 424, 430
BseRI	GAGGAG	1 cut(s)	48
BseXI	GCAGC	2 cut(s)	78, 353
BsgI	GTGCAG	1 cut(s)	350
BshFI	GGCC	1 cut(s)	300
BsmAI	GTCTC	2 cut(s)	48, 202
BsnI	GGCC	1 cut(s)	300
Bso31I	GGTCTC	1 cut(s)	202
Bsp1407I	TGTACA	1 cut(s)	394
Bsp143I	GATC	2 cut(s)	175, 333
BspACI	CCGC	1 cut(s)	432
BspANI	GGCC	1 cut(s)	300
BspCNI	CTCAG	3 cut(s)	133, 423, 429
BspLI	GGNNCC	1 cut(s)	313
BspPI	GGATC	1 cut(s)	170
BspQI	GCTCTTC	1 cut(s)	122
BspTNI	GGTCTC	1 cut(s)	202
BsrGI	TGTACA	1 cut(s)	394
BssECI	CCNNGG	1 cut(s)	295
BssMI	GATC	2 cut(s)	175, 333
BssSI	CACGAG	1 cut(s)	114
BssT1I	CCWWGG	1 cut(s)	295
Bst2BI	CACGAG	1 cut(s)	114
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	1 cut(s)	350
Bst6I	CTCTTC	2 cut(s)	122, 354
BstAUI	TGTACA	1 cut(s)	394
BstC8I	GCNNGC	1 cut(s)	98
BstDEI	CTNAG	3 cut(s)	141, 410, 416
BstF5I	GGATG	1 cut(s)	250
BstKTI	GATC	2 cut(s)	178, 336
BstMAI	GTCTC	2 cut(s)	48, 202
BstMBI	GATC	2 cut(s)	175, 333
BstNI	CCWGG	1 cut(s)	194
BstSCI	CCNGG	1 cut(s)	192
BstV1I	GCAGC	2 cut(s)	78, 353
BsuI	GTATCC	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	300
BtsCI	GGATG	1 cut(s)	250
BtsI	GCAGTG	1 cut(s)	461
BtsIMutI	CAGTG	1 cut(s)	461
Cac8I	GCNNGC	1 cut(s)	98
Cfr13I	GGNCC	1 cut(s)	263
Csp6I	GTAC	2 cut(s)	395, 467
CspCI	CAANNNNNGTGG	2 cut(s)	437, 472
CviAII	CATG	2 cut(s)	58, 403
CviJI	RGCY	6 cut(s)	106, 278, 300, 314, 356, 366
CviKI_1	RGCY	6 cut(s)	106, 278, 300, 314, 356, 366
CviQI	GTAC	2 cut(s)	395, 467
DdeI	CTNAG	3 cut(s)	141, 410, 416
DpnI	GATC	2 cut(s)	177, 335
DpnII	GATC	2 cut(s)	175, 333
Eam1104I	CTCTTC	2 cut(s)	122, 354
EarI	CTCTTC	2 cut(s)	122, 354
Eco130I	CCWWGG	1 cut(s)	295
Eco147I	AGGCCT	1 cut(s)	300
Eco31I	GGTCTC	1 cut(s)	202
Eco47I	GGWCC	1 cut(s)	263
Eco57I	CTGAAG	1 cut(s)	378
EcoRI	GAATTC	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	192
EcoT14I	CCWWGG	1 cut(s)	295
ErhI	CCWWGG	1 cut(s)	295
FaeI	CATG	2 cut(s)	61, 406
FaiI	YATR	6 cut(s)	24, 59, 207, 317, 404, 487
FalI	AAGNNNNNCTT	2 cut(s)	375, 407
FatI	CATG	2 cut(s)	57, 402
FauI	CCCGC	1 cut(s)	425
Fnu4HI	GCNGC	2 cut(s)	67, 367
FokI	GGATG	1 cut(s)	257
Fsp4HI	GCNGC	2 cut(s)	67, 367
FspBI	CTAG	3 cut(s)	353, 471, 477
GluI	GCNGC	2 cut(s)	67, 367
HaeIII	GGCC	1 cut(s)	300
Hin1II	CATG	2 cut(s)	61, 406
HinfI	GANTC	4 cut(s)	112, 136, 160, 414
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188I	TCNGA	5 cut(s)	53, 89, 382, 413, 419
Hpy188III	TCNNGA	1 cut(s)	140
Hpy8I	GTNNAC	1 cut(s)	40
HpyAV	CCTTC	1 cut(s)	377
HpyCH4III	ACNGT	1 cut(s)	350
HpyCH4V	TGCA	4 cut(s)	248, 331, 369, 454
HpyF3I	CTNAG	3 cut(s)	141, 410, 416
Hsp92II	CATG	2 cut(s)	61, 406
Kzo9I	GATC	2 cut(s)	175, 333
LguI	GCTCTTC	1 cut(s)	122
LmnI	GCTCC	1 cut(s)	311
LpnPI	CCDG	3 cut(s)	153, 179, 206
Lsp1109I	GCAGC	2 cut(s)	78, 353
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	3 cut(s)	353, 471, 477
MalI	GATC	2 cut(s)	177, 335
MboI	GATC	2 cut(s)	175, 333
MboII	GAAGA	6 cut(s)	136, 139, 176, 295, 317, 371
MfeI	CAATTG	3 cut(s)	155, 168, 449
MluCI	AATT	5 cut(s)	18, 155, 168, 318, 449
MlyI	GAGTC	3 cut(s)	106, 154, 408
MnlI	CCTC	1 cut(s)	26
MseI	TTAA	1 cut(s)	273
MspR9I	CCNGG	1 cut(s)	194
MunI	CAATTG	3 cut(s)	155, 168, 449
MvaI	CCWGG	1 cut(s)	194
NdeII	GATC	2 cut(s)	175, 333
NlaIII	CATG	2 cut(s)	61, 406
NlaIV	GGNNCC	1 cut(s)	313
PceI	AGGCCT	1 cut(s)	300
PciSI	GCTCTTC	1 cut(s)	122
PfeI	GAWTC	1 cut(s)	136
PkrI	GCNGC	2 cut(s)	68, 368
PleI	GAGTC	3 cut(s)	106, 154, 408
PpsI	GAGTC	3 cut(s)	106, 154, 408
Psp6I	CCWGG	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	192
PspN4I	GGNNCC	1 cut(s)	313
PspPI	GGNCC	1 cut(s)	263
RsaI	GTAC	2 cut(s)	396, 468
RsaNI	GTAC	2 cut(s)	395, 467
SapI	GCTCTTC	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	2 cut(s)	67, 367
Sau3AI	GATC	2 cut(s)	175, 333
Sau96I	GGNCC	1 cut(s)	263
SchI	GAGTC	3 cut(s)	106, 154, 408
ScrFI	CCNGG	1 cut(s)	194
SetI	ASST	5 cut(s)	45, 108, 358, 368, 472
SfaNI	GCATC	1 cut(s)	235
SinI	GGWCC	1 cut(s)	263
Sse9I	AATT	5 cut(s)	18, 155, 168, 318, 449
SseBI	AGGCCT	1 cut(s)	300
SsiI	CCGC	1 cut(s)	432
SspMI	CTAG	3 cut(s)	353, 471, 477
StuI	AGGCCT	1 cut(s)	300
StyD4I	CCNGG	1 cut(s)	192
StyI	CCWWGG	1 cut(s)	295
TaaI	ACNGT	1 cut(s)	350
TasI	AATT	5 cut(s)	18, 155, 168, 318, 449
TatI	WGTACW	1 cut(s)	394
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	1 cut(s)	461
TseI	GCWGC	2 cut(s)	66, 366
TspDTI	ATGAA	3 cut(s)	11, 165, 259
TspRI	CASTG	1 cut(s)	461
VpaK11BI	GGWCC	1 cut(s)	263
XapI	RAATTY	1 cut(s)	18
XspI	CTAG	3 cut(s)	353, 471, 477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.