Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001057

Physical Location & Seq

Genomic Coordinates Reverse (-)

20970095 .. 20972302

Gene Structure 2208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g28670.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGAGAACATGCTGGGTCTGTTGAGAATTCACATCCAAAGAGGAGTGAACCTCGCCGTCAGAGACATGAGAAGCAGTGACCCTTATGTTATTGTCAAAATGAGCAAGCAGAAGCTAAAGACTCGTGTGGTGAAGAAGAGCGTGAATCCTGAGTGGAATGAGCAACTGACTCTTTCAATTGTTGATCCAAGTCTTCCAATCCTGGTCTCTGTGTATGACAAGGATACATTTAGTTTTGACGACAAAATGGGGGATGCACAGTTTGAGATCGGTCCATTCATCAAAGCCATGAAGATGAATTTCCAAGACCTCCAAGATGGAGCCATAATTTCTAAAGTGCAGGCAAACAAGCAAAATTGTCTCGCCGAAGAGAGCTGCATTATCTACTCCAAAGGCAAACTGGTACAAAACATGGTTCTAAGACTCAAAAATGTCGAGTGTGGGGAAGTGGAACTCCAATTGCAGTGGATTGATATTCCTAGTTCAAAAGGTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0008047 GO:0008150 GO:0008289 GO:0009611 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0023051 GO:0023056 GO:0030234 GO:0030695 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0043900 GO:0043902 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0080134 GO:0098772 GO:1900424 GO:1900426 GO:1901000 GO:1901002 GO:1901419 GO:1901421 GO:1902477 GO:1902479 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00260 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00220 map00250 map00260 map00630 map00710 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Protein Analysis

166

Amino Acids

18.75

Weight (kDa)

8.39

Isoelectric Point (pI)

49.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	6 - 93	1.3e-22	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70810 AT5G37740 AT5G37740
fragaria_vesca	FvH4_1g27320 FvH4_1g28670 FvH4_1g28680 FvH4_1g28690 FvH4_2g18820
malus_domestica	MD09G1278700.v1.1 MD09G1278800.v1.1 MD09G1278900.v1.1 MD09G1279000.v1.1 MD17G1260900.v1.1
prunus_persica	Prupe.3G162700_v2.0.a1 Prupe.3G162800_v2.0.a1 Prupe.3G162900_v2.0.a1 Prupe.3G162900_v2.0.a1
pyrus_communis	pycom09g17860 pycom09g17870 pycom09g17880 pycom09g17890 pycom17g26160
rosa_chinensis	RchiOBHm_Chr3g0492961 RchiOBHm_Chr3g0492971 RchiOBHm_Chr3g0492991
rosa_laevigata	RLG00000022734 RLG00000022736 RLG00000022737 RLG00000022739 RLG00000022740 RLG00000022741
rosa_multiflora	Rmu_co8406109.1_g000001 Rmu_sc0000395.1_g000015 Rmu_sc0000395.1_g000023 Rmu_sc0000395.1_g000029 Rmu_sc0008956.1_g000004 Rmu_sc0016690.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391990 Rroxscaffold_6G00392000 Rroxscaffold_6G00392010
rosa_rugosa	Rorug03G0256700 Rorug03G0257800 Rorug03G0258000 Rorug03G0258400 Rorug03G0258500 Rorug03G0258500
rosa_samantha	Rh3AG306200 Rh3AG307300 Rh3AG307500 Rh3BG342700 Rh3BG342800 Rh3BG342900 Rh3CG340000 Rh3CG340200 Rh3DG342000 Rh3DG342200 Rh3DG342400
rosa_wichuraiana	Rw3G027020 Rw3G027030 Rw3G027040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	179
AcsI	RAATTY	2 cut(s)	27, 298
AfaI	GTAC	1 cut(s)	405
AgsI	TTSAA	2 cut(s)	177, 486
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	2 cut(s)	115, 375
AluI	AGCT	2 cut(s)	115, 375
Alw26I	GTCTC	3 cut(s)	57, 211, 365
AlwI	GGATC	1 cut(s)	179
ApeKI	GCWGC	1 cut(s)	375
ApoI	RAATTY	2 cut(s)	27, 298
AspS9I	GGNCC	1 cut(s)	272
AsuHPI	GGTGA	1 cut(s)	142
AvaII	GGWCC	1 cut(s)	272
BauI	CACGAG	1 cut(s)	123
BbsI	GAAGAC	1 cut(s)	185
BbvI	GCAGC	1 cut(s)	362
BccI	CCATC	1 cut(s)	311
BceAI	ACGGC	1 cut(s)	41
BciT130I	CCWGG	1 cut(s)	203
BciVI	GTATCC	1 cut(s)	217
BcoDI	GTCTC	3 cut(s)	57, 211, 365
BfaI	CTAG	1 cut(s)	480
BfmI	CTRYAG	1 cut(s)	494
BfuI	GTATCC	1 cut(s)	217
BisI	GCNGC	1 cut(s)	376
BlsI	GCNGC	1 cut(s)	377
Bme1390I	CCNGG	1 cut(s)	203
Bme18I	GGWCC	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	272
BmiI	GGNNCC	1 cut(s)	322
BmrFI	CCNGG	1 cut(s)	203
BmsI	GCATC	1 cut(s)	244
BpiI	GAAGAC	1 cut(s)	185
BplI	GAGNNNNNCTC	2 cut(s)	36, 68
BsaI	GGTCTC	1 cut(s)	211
Bse1I	ACTGG	1 cut(s)	405
BseBI	CCWGG	1 cut(s)	203
BseGI	GGATG	2 cut(s)	33, 259
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	405
BseRI	GAGGAG	1 cut(s)	57
BseXI	GCAGC	1 cut(s)	362
BseYI	CCCAGC	1 cut(s)	13
BsgI	GTGCAG	1 cut(s)	359
BsmAI	GTCTC	3 cut(s)	57, 211, 365
Bso31I	GGTCTC	1 cut(s)	211
Bsp143I	GATC	2 cut(s)	184, 267
BspCNI	CTCAG	1 cut(s)	142
BspLI	GGNNCC	1 cut(s)	322
BspPI	GGATC	1 cut(s)	179
BspQI	GCTCTTC	1 cut(s)	131
BspTNI	GGTCTC	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	405
BssMI	GATC	2 cut(s)	184, 267
BssSI	CACGAG	1 cut(s)	123
Bst2BI	CACGAG	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	203
Bst4CI	ACNGT	1 cut(s)	261
Bst6I	CTCTTC	2 cut(s)	131, 363
BstC8I	GCNNGC	2 cut(s)	107, 342
BstDEI	CTNAG	2 cut(s)	150, 419
BstF5I	GGATG	2 cut(s)	33, 259
BstKTI	GATC	2 cut(s)	187, 270
BstMAI	GTCTC	3 cut(s)	57, 211, 365
BstMBI	GATC	2 cut(s)	184, 267
BstNI	CCWGG	1 cut(s)	203
BstNSI	RCATGY	1 cut(s)	13
BstSCI	CCNGG	1 cut(s)	201
BstSFI	CTRYAG	1 cut(s)	494
BstV1I	GCAGC	1 cut(s)	362
BstV2I	GAAGAC	1 cut(s)	185
BsuI	GTATCC	1 cut(s)	217
BtsCI	GGATG	2 cut(s)	33, 259
BtsI	GCAGTG	2 cut(s)	82, 470
BtsIMutI	CAGTG	2 cut(s)	82, 470
Cac8I	GCNNGC	2 cut(s)	107, 342
Cfr13I	GGNCC	1 cut(s)	272
Csp6I	GTAC	1 cut(s)	404
CspCI	CAANNNNNGTGG	2 cut(s)	446, 481
CviAII	CATG	4 cut(s)	10, 67, 289, 412
CviJI	RGCY	4 cut(s)	115, 287, 323, 375
CviKI_1	RGCY	4 cut(s)	115, 287, 323, 375
CviQI	GTAC	1 cut(s)	404
DdeI	CTNAG	2 cut(s)	150, 419
DpnI	GATC	2 cut(s)	186, 269
DpnII	GATC	2 cut(s)	184, 267
Eam1104I	CTCTTC	2 cut(s)	131, 363
EarI	CTCTTC	2 cut(s)	131, 363
Eco31I	GGTCTC	1 cut(s)	211
Eco47I	GGWCC	1 cut(s)	272
EcoRI	GAATTC	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	201
FaeI	CATG	4 cut(s)	13, 70, 292, 415
FaiI	YATR	8 cut(s)	11, 68, 87, 216, 290, 326, 413, 496
FatI	CATG	4 cut(s)	9, 66, 288, 411
Fnu4HI	GCNGC	1 cut(s)	376
FokI	GGATG	2 cut(s)	20, 266
Fsp4HI	GCNGC	1 cut(s)	376
FspBI	CTAG	1 cut(s)	480
GluI	GCNGC	1 cut(s)	376
GsaI	CCCAGC	1 cut(s)	17
Hin1II	CATG	4 cut(s)	13, 70, 292, 415
HinfI	GANTC	4 cut(s)	121, 145, 169, 423
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	1 cut(s)	62
Hpy188III	TCNNGA	1 cut(s)	149
Hpy8I	GTNNAC	1 cut(s)	49
HpyCH4III	ACNGT	1 cut(s)	261
HpyCH4V	TGCA	4 cut(s)	257, 340, 378, 463
HpyF3I	CTNAG	2 cut(s)	150, 419
Hsp92II	CATG	4 cut(s)	13, 70, 292, 415
Kzo9I	GATC	2 cut(s)	184, 267
LguI	GCTCTTC	1 cut(s)	131
LmnI	GCTCC	1 cut(s)	320
LpnPI	CCDG	5 cut(s)	162, 188, 215, 326, 386
Lsp1109I	GCAGC	1 cut(s)	362
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	1 cut(s)	480
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	2 cut(s)	186, 269
MboI	GATC	2 cut(s)	184, 267
MboII	GAAGA	5 cut(s)	145, 148, 185, 304, 380
MfeI	CAATTG	2 cut(s)	177, 458
MluCI	AATT	6 cut(s)	27, 177, 298, 327, 355, 458
MlyI	GAGTC	3 cut(s)	115, 163, 417
MnlI	CCTC	3 cut(s)	35, 62, 320
MslI	CAYNNNNRTG	1 cut(s)	293
MspR9I	CCNGG	1 cut(s)	203
MunI	CAATTG	2 cut(s)	177, 458
MvaI	CCWGG	1 cut(s)	203
NdeII	GATC	2 cut(s)	184, 267
NlaIII	CATG	4 cut(s)	13, 70, 292, 415
NlaIV	GGNNCC	1 cut(s)	322
NmuCI	GTSAC	1 cut(s)	77
NspI	RCATGY	1 cut(s)	13
PciSI	GCTCTTC	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	145
PkrI	GCNGC	1 cut(s)	377
PleI	GAGTC	3 cut(s)	115, 163, 417
PpsI	GAGTC	3 cut(s)	115, 163, 417
Psp6I	CCWGG	1 cut(s)	201
PspFI	CCCAGC	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	1 cut(s)	322
PspPI	GGNCC	1 cut(s)	272
RsaI	GTAC	1 cut(s)	405
RsaNI	GTAC	1 cut(s)	404
RseI	CAYNNNNRTG	1 cut(s)	293
SapI	GCTCTTC	1 cut(s)	131
SatI	GCNGC	1 cut(s)	376
Sau3AI	GATC	2 cut(s)	184, 267
Sau96I	GGNCC	1 cut(s)	272
SchI	GAGTC	3 cut(s)	115, 163, 417
ScrFI	CCNGG	1 cut(s)	203
SetI	ASST	5 cut(s)	54, 117, 312, 377, 493
SfaNI	GCATC	1 cut(s)	244
SfcI	CTRYAG	1 cut(s)	494
SinI	GGWCC	1 cut(s)	272
SmiMI	CAYNNNNRTG	1 cut(s)	293
Sse9I	AATT	6 cut(s)	27, 177, 298, 327, 355, 458
SspMI	CTAG	1 cut(s)	480
StyD4I	CCNGG	1 cut(s)	201
TaaI	ACNGT	1 cut(s)	261
TaqI	TCGA	1 cut(s)	435
TaqII	GACCGA	1 cut(s)	260
TasI	AATT	6 cut(s)	27, 177, 298, 327, 355, 458
TfiI	GAWTC	1 cut(s)	145
TscAI	CASTG	2 cut(s)	82, 470
TseFI	GTSAC	1 cut(s)	77
TseI	GCWGC	1 cut(s)	375
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	3 cut(s)	268, 305, 311
TspRI	CASTG	2 cut(s)	82, 470
VpaK11BI	GGWCC	1 cut(s)	272
XapI	RAATTY	2 cut(s)	27, 298
XceI	RCATGY	1 cut(s)	13
XcmI	CCANNNNNNNNNTGG	1 cut(s)	397
XspI	CTAG	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.