Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001057

Physical Location & Seq

Genomic Coordinates Reverse (-)

35579866 .. 35581143

Gene Structure 1278 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1279000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGAGACCATGATGGGTCTGCTGAGGATTCATGTCCAAAGAGGATTGAACCTTGCTGTTCGAGACCTGACAAGCAGTGATCCTTATGTTGTTGTTAAAATGGGCAAGCAGAAACTGAAAACTCGTGTAGTGAAGAGGAATGTGAATCCAGAATGGGATGAAAGATTGACACTTTCAGTTACAGAACCAAATCTTCCGATCACGCTTTCTGTGTACGATAAAGATACATTTAGTTTTGATGACAAAATGGGGGACGCAGAGTTTGATATTGCACTATTTATCAAAGTCTTGAGGATGCAATTGGCAGGTCTACCAGATGGAACCGTACTTACAAAAGTACAACCAAGCAGGGAAAATTGCCTTGCTGAAGAGAGCTGCATTATCTGGTCCAACGGCAAACTCGTTCAAAACATGATCCTCCGACTCAGAAATGTGGAGTGTGGGGAGGTTGAACTCCAGTTGCAGTGGATTGATGTTCCTAGTTCTAGGGTTGGATTTGGTGGCCTGGCTTATTCAATTCTTTTGTTCATAAAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0008047 GO:0008150 GO:0008289 GO:0009611 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0023051 GO:0023056 GO:0030234 GO:0030695 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0043900 GO:0043902 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0080134 GO:0098772 GO:1900424 GO:1900426 GO:1901000 GO:1901002 GO:1901419 GO:1901421 GO:1902477 GO:1902479 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

180

Amino Acids

20.3

Weight (kDa)

6.6

Isoelectric Point (pI)

44.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	6 - 91	9.4e-23	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70810 AT5G37740 AT5G37740
fragaria_vesca	FvH4_1g27320 FvH4_1g28670 FvH4_1g28680 FvH4_1g28690 FvH4_2g18820
malus_domestica	MD09G1278700.v1.1 MD09G1278800.v1.1 MD09G1278900.v1.1 MD09G1279000.v1.1 MD17G1260900.v1.1
prunus_persica	Prupe.3G162700_v2.0.a1 Prupe.3G162800_v2.0.a1 Prupe.3G162900_v2.0.a1 Prupe.3G162900_v2.0.a1
pyrus_communis	pycom09g17860 pycom09g17870 pycom09g17880 pycom09g17890 pycom17g26160
rosa_chinensis	RchiOBHm_Chr3g0492961 RchiOBHm_Chr3g0492971 RchiOBHm_Chr3g0492991
rosa_laevigata	RLG00000022734 RLG00000022736 RLG00000022737 RLG00000022739 RLG00000022740 RLG00000022741
rosa_multiflora	Rmu_co8406109.1_g000001 Rmu_sc0000395.1_g000015 Rmu_sc0000395.1_g000023 Rmu_sc0000395.1_g000029 Rmu_sc0008956.1_g000004 Rmu_sc0016690.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391990 Rroxscaffold_6G00392000 Rroxscaffold_6G00392010
rosa_rugosa	Rorug03G0256700 Rorug03G0257800 Rorug03G0258000 Rorug03G0258400 Rorug03G0258500 Rorug03G0258500
rosa_samantha	Rh3AG306200 Rh3AG307300 Rh3AG307500 Rh3BG342700 Rh3BG342800 Rh3BG342900 Rh3CG340000 Rh3CG340200 Rh3DG342000 Rh3DG342200 Rh3DG342400
rosa_wichuraiana	Rw3G027020 Rw3G027030 Rw3G027040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	296
AccI	GTMKAC	1 cut(s)	310
AclWI	GGATC	2 cut(s)	74, 409
AcuI	CTGAAG	1 cut(s)	387
AfaI	GTAC	3 cut(s)	215, 327, 339
AgsI	TTSAA	4 cut(s)	49, 407, 452, 516
AjnI	CCWGG	1 cut(s)	504
AluBI	AGCT	1 cut(s)	375
AluI	AGCT	1 cut(s)	375
Alw26I	GTCTC	1 cut(s)	57
AlwI	GGATC	2 cut(s)	74, 409
AlwNI	CAGNNNCTG	1 cut(s)	115
AoxI	GGCC	1 cut(s)	502
ApeKI	GCWGC	1 cut(s)	375
ArsI	GACNNNNNNTTYG	2 cut(s)	245, 277
AspS9I	GGNCC	1 cut(s)	387
AvaII	GGWCC	1 cut(s)	387
BauI	CACGAG	1 cut(s)	123
BbvCI	CCTCAGC	1 cut(s)	23
BbvI	GCAGC	1 cut(s)	362
BccI	CCATC	2 cut(s)	7, 311
BceAI	ACGGC	1 cut(s)	409
BciT130I	CCWGG	1 cut(s)	506
BcoDI	GTCTC	1 cut(s)	57
BfaI	CTAG	2 cut(s)	480, 486
BfuAI	ACCTGC	1 cut(s)	296
BisI	GCNGC	1 cut(s)	376
BlsI	GCNGC	1 cut(s)	377
Bme1390I	CCNGG	1 cut(s)	506
Bme18I	GGWCC	1 cut(s)	387
BmgT120I	GGNCC	1 cut(s)	387
BmiI	GGNNCC	1 cut(s)	322
BmrFI	CCNGG	1 cut(s)	506
BmsI	GCATC	1 cut(s)	285
BpmI	CTGGAG	1 cut(s)	440
Bpu10I	CCTNAGC	1 cut(s)	23
BpuEI	CTTGAG	1 cut(s)	310
BsaI	GGTCTC	1 cut(s)	57
Bse1I	ACTGG	1 cut(s)	457
BseBI	CCWGG	1 cut(s)	506
BseGI	GGATG	2 cut(s)	163, 300
BseMII	CTCAG	2 cut(s)	14, 439
BseNI	ACTGG	1 cut(s)	457
BseXI	GCAGC	1 cut(s)	362
BshFI	GGCC	1 cut(s)	504
BslFI	GGGAC	1 cut(s)	266
BsmAI	GTCTC	1 cut(s)	57
BsmFI	GGGAC	1 cut(s)	266
BsnI	GGCC	1 cut(s)	504
Bso31I	GGTCTC	1 cut(s)	57
Bsp143I	GATC	3 cut(s)	79, 198, 414
BspANI	GGCC	1 cut(s)	504
BspCNI	CTCAG	2 cut(s)	15, 438
BspLI	GGNNCC	1 cut(s)	322
BspMI	ACCTGC	1 cut(s)	296
BspPI	GGATC	2 cut(s)	74, 409
BspTNI	GGTCTC	1 cut(s)	57
BsrI	ACTGG	1 cut(s)	457
BssMI	GATC	3 cut(s)	79, 198, 414
BssSI	CACGAG	1 cut(s)	123
Bst2BI	CACGAG	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	506
Bst4CI	ACNGT	1 cut(s)	325
Bst6I	CTCTTC	2 cut(s)	128, 363
BstC8I	GCNNGC	1 cut(s)	107
BstDEI	CTNAG	2 cut(s)	23, 425
BstF5I	GGATG	2 cut(s)	163, 300
BstKTI	GATC	3 cut(s)	82, 201, 417
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	3 cut(s)	79, 198, 414
BstNI	CCWGG	1 cut(s)	506
BstSCI	CCNGG	1 cut(s)	504
BstV1I	GCAGC	1 cut(s)	362
BsuRI	GGCC	1 cut(s)	504
BtsCI	GGATG	2 cut(s)	163, 300
BtsI	GCAGTG	2 cut(s)	82, 470
BtsIMutI	CAGTG	2 cut(s)	82, 470
BveI	ACCTGC	1 cut(s)	296
Cac8I	GCNNGC	1 cut(s)	107
CaiI	CAGNNNCTG	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	387
CseI	GACGC	1 cut(s)	263
Csp6I	GTAC	3 cut(s)	214, 326, 338
CviAII	CATG	3 cut(s)	10, 32, 412
CviJI	RGCY	3 cut(s)	375, 504, 509
CviKI_1	RGCY	3 cut(s)	375, 504, 509
CviQI	GTAC	3 cut(s)	214, 326, 338
DdeI	CTNAG	2 cut(s)	23, 425
DpnI	GATC	3 cut(s)	81, 200, 416
DpnII	GATC	3 cut(s)	79, 198, 414
Eam1104I	CTCTTC	2 cut(s)	128, 363
EarI	CTCTTC	2 cut(s)	128, 363
Eco31I	GGTCTC	1 cut(s)	57
Eco47I	GGWCC	1 cut(s)	387
Eco57I	CTGAAG	1 cut(s)	387
EcoRII	CCWGG	1 cut(s)	504
FaeI	CATG	3 cut(s)	13, 35, 415
FaiI	YATR	5 cut(s)	11, 33, 87, 413, 530
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	3 cut(s)	9, 31, 411
FblI	GTMKAC	1 cut(s)	310
Fnu4HI	GCNGC	1 cut(s)	376
FokI	GGATG	2 cut(s)	170, 307
Fsp4HI	GCNGC	1 cut(s)	376
FspBI	CTAG	2 cut(s)	480, 486
GluI	GCNGC	1 cut(s)	376
GsuI	CTGGAG	1 cut(s)	440
HaeIII	GGCC	1 cut(s)	504
HgaI	GACGC	1 cut(s)	263
Hin1II	CATG	3 cut(s)	13, 35, 415
HinfI	GANTC	3 cut(s)	28, 145, 423
Hpy166II	GTNNAC	2 cut(s)	214, 311
Hpy188I	TCNGA	3 cut(s)	198, 422, 428
Hpy188III	TCNNGA	3 cut(s)	62, 149, 289
Hpy8I	GTNNAC	2 cut(s)	214, 311
HpyCH4III	ACNGT	1 cut(s)	325
HpyCH4V	TGCA	4 cut(s)	272, 298, 378, 463
HpyF3I	CTNAG	2 cut(s)	23, 425
Hsp92II	CATG	3 cut(s)	13, 35, 415
Kzo9I	GATC	3 cut(s)	79, 198, 414
LpnPI	CCDG	9 cut(s)	80, 162, 291, 327, 334, 370, 470, 491, 518
Lsp1109I	GCAGC	1 cut(s)	362
LweI	GCATC	1 cut(s)	285
MaeI	CTAG	2 cut(s)	480, 486
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	3 cut(s)	81, 200, 416
MboI	GATC	3 cut(s)	79, 198, 414
MboII	GAAGA	3 cut(s)	145, 185, 380
MfeI	CAATTG	1 cut(s)	299
MluCI	AATT	3 cut(s)	299, 355, 516
MlyI	GAGTC	1 cut(s)	417
MmeI	TCCRAC	3 cut(s)	414, 445, 472
MnlI	CCTC	6 cut(s)	18, 35, 129, 285, 428, 439
MseI	TTAA	1 cut(s)	96
MslI	CAYNNNNRTG	1 cut(s)	533
MspR9I	CCNGG	1 cut(s)	506
MunI	CAATTG	1 cut(s)	299
MvaI	CCWGG	1 cut(s)	506
NdeII	GATC	3 cut(s)	79, 198, 414
NlaIII	CATG	3 cut(s)	13, 35, 415
NlaIV	GGNNCC	1 cut(s)	322
PcsI	WCGNNNNNNNCGW	1 cut(s)	399
PfeI	GAWTC	2 cut(s)	28, 145
PkrI	GCNGC	1 cut(s)	377
PleI	GAGTC	1 cut(s)	417
PpsI	GAGTC	1 cut(s)	417
Psp6I	CCWGG	1 cut(s)	504
PspGI	CCWGG	1 cut(s)	504
PspN4I	GGNNCC	1 cut(s)	322
PspPI	GGNCC	1 cut(s)	387
PsrI	GAACNNNNNNTAC	2 cut(s)	313, 345
PstNI	CAGNNNCTG	1 cut(s)	115
RsaI	GTAC	3 cut(s)	215, 327, 339
RsaNI	GTAC	3 cut(s)	214, 326, 338
RseI	CAYNNNNRTG	1 cut(s)	533
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	1 cut(s)	376
Sau3AI	GATC	3 cut(s)	79, 198, 414
Sau96I	GGNCC	1 cut(s)	387
SchI	GAGTC	1 cut(s)	417
ScrFI	CCNGG	1 cut(s)	506
SetI	ASST	5 cut(s)	54, 69, 310, 377, 450
SfaNI	GCATC	1 cut(s)	285
SinI	GGWCC	1 cut(s)	387
SmiMI	CAYNNNNRTG	1 cut(s)	533
SmlI	CTYRAG	1 cut(s)	289
SmoI	CTYRAG	1 cut(s)	289
Sse9I	AATT	3 cut(s)	299, 355, 516
SspMI	CTAG	2 cut(s)	480, 486
StyD4I	CCNGG	1 cut(s)	504
TaaI	ACNGT	1 cut(s)	325
TaqI	TCGA	1 cut(s)	61
TasI	AATT	3 cut(s)	299, 355, 516
TatI	WGTACW	1 cut(s)	337
TfiI	GAWTC	2 cut(s)	28, 145
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TscAI	CASTG	2 cut(s)	82, 470
TseI	GCWGC	1 cut(s)	375
TspDTI	ATGAA	3 cut(s)	20, 174, 517
TspRI	CASTG	2 cut(s)	82, 470
VpaK11BI	GGWCC	1 cut(s)	387
XmiI	GTMKAC	1 cut(s)	310
XspI	CTAG	2 cut(s)	480, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.