Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0001057

Physical Location & Seq

Genomic Coordinates Forward (+)

18390202 .. 18391305

Gene Structure 1104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g17860.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGGTCACGTAAGGGTGGCATCTACCCTTTTCTTTTCGGTCAAGTGGGTGGCTTCTAGTAAAAGCATAAAGAATACTGTTCAGACAATTTTGTGTATAAAAGGCAGGAAAGGCAGTGGTTTGGCATCAAAACTCCTTCACACACAGATTCACTTGAATACAAAGAAACCAAATTTCTCACCCTCCTCTCCTGCATATTCCTTCGCACTCCTGCCATTTTTGGTACTAGTTGAATTTGTGGAAATAAATTACACAAAATCTGGTGTTGATCTAATGGAGACCATGATGGGTCTGCTGAGGATTCATGTCCAAAGAGGAGTGAACCTTGCTGTTCGAGACCTGACAAGCAGTGATCCTTATGTTGTTGTTAAAATGGGCAAGCAGAAACTGAAAACTGGTGTGGTGAAGAGGAATGTGAATCCAGAATGGGATGAAAGATTGACACTTTCAGTTACCGAACCAAATCTTCCGATCACGCTTTCTGTGTACGATAAAGACACATTTAGTTTTGATGACAAAATGGGAGACGCAGAGTTTGATATTGCACTATTTATCAAAGTCTTGAGGATGCAATTGGAAGGTCTCCCAGATGGAACCGTACTTACAAAAGTACAACCAAGCAGGGAAAACTGCCTTGCTGAAGAAAGCTGCATTATCTGGTCCAACGGCAAACTCGTTCAAAACATGATCCTCCGACTCAGAAATGTGGAGTGTGGCGAGGTTGAACTCCAGTTGCAGTGGATTGATGTTCCTAGTTCTAGGGGTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0008047 GO:0008150 GO:0008289 GO:0009611 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0023051 GO:0023056 GO:0030234 GO:0030695 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0043900 GO:0043902 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0080134 GO:0098772 GO:1900424 GO:1900426 GO:1901000 GO:1901002 GO:1901419 GO:1901421 GO:1902477 GO:1902479 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

257

Amino Acids

28.68

Weight (kDa)

8.99

Isoelectric Point (pI)

36.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70810 AT5G37740 AT5G37740
fragaria_vesca	FvH4_1g27320 FvH4_1g28670 FvH4_1g28680 FvH4_1g28690 FvH4_2g18820
malus_domestica	MD09G1278700.v1.1 MD09G1278800.v1.1 MD09G1278900.v1.1 MD09G1279000.v1.1 MD17G1260900.v1.1
prunus_persica	Prupe.3G162700_v2.0.a1 Prupe.3G162800_v2.0.a1 Prupe.3G162900_v2.0.a1 Prupe.3G162900_v2.0.a1
pyrus_communis	pycom09g17860 pycom09g17870 pycom09g17880 pycom09g17890 pycom17g26160
rosa_chinensis	RchiOBHm_Chr3g0492961 RchiOBHm_Chr3g0492971 RchiOBHm_Chr3g0492991
rosa_laevigata	RLG00000022734 RLG00000022736 RLG00000022737 RLG00000022739 RLG00000022740 RLG00000022741
rosa_multiflora	Rmu_co8406109.1_g000001 Rmu_sc0000395.1_g000015 Rmu_sc0000395.1_g000023 Rmu_sc0000395.1_g000029 Rmu_sc0008956.1_g000004 Rmu_sc0016690.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391990 Rroxscaffold_6G00392000 Rroxscaffold_6G00392010
rosa_rugosa	Rorug03G0256700 Rorug03G0257800 Rorug03G0258000 Rorug03G0258400 Rorug03G0258500 Rorug03G0258500
rosa_samantha	Rh3AG306200 Rh3AG307300 Rh3AG307500 Rh3BG342700 Rh3BG342800 Rh3BG342900 Rh3CG340000 Rh3CG340200 Rh3DG342000 Rh3DG342200 Rh3DG342400
rosa_wichuraiana	Rw3G027020 Rw3G027030 Rw3G027040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	347, 682
AcsI	RAATTY	2 cut(s)	172, 233
AcuI	CTGAAG	1 cut(s)	660
AfaI	GTAC	4 cut(s)	225, 488, 600, 612
AgsI	TTSAA	4 cut(s)	157, 233, 680, 725
AhlI	ACTAGT	1 cut(s)	226
AluBI	AGCT	1 cut(s)	648
AluI	AGCT	1 cut(s)	648
Alw26I	GTCTC	4 cut(s)	272, 330, 519, 587
AlwI	GGATC	2 cut(s)	347, 682
AlwNI	CAGNNNCTG	1 cut(s)	388
ApeKI	GCWGC	1 cut(s)	648
ApoI	RAATTY	2 cut(s)	172, 233
ArsI	GACNNNNNNTTYG	2 cut(s)	518, 550
AspS9I	GGNCC	1 cut(s)	660
AsuHPI	GGTGA	2 cut(s)	171, 415
AvaII	GGWCC	1 cut(s)	660
BbvCI	CCTCAGC	1 cut(s)	296
BbvI	GCAGC	1 cut(s)	635
BccI	CCATC	2 cut(s)	280, 584
BceAI	ACGGC	1 cut(s)	682
BcoDI	GTCTC	4 cut(s)	272, 330, 519, 587
BcuI	ACTAGT	1 cut(s)	226
BfaI	CTAG	4 cut(s)	57, 227, 753, 759
BfmI	CTRYAG	1 cut(s)	767
BisI	GCNGC	1 cut(s)	649
BlsI	GCNGC	1 cut(s)	650
Bme18I	GGWCC	1 cut(s)	660
BmgT120I	GGNCC	1 cut(s)	660
BmiI	GGNNCC	1 cut(s)	595
BmsI	GCATC	3 cut(s)	29, 134, 558
BpmI	CTGGAG	1 cut(s)	713
Bpu10I	CCTNAGC	1 cut(s)	296
BpuEI	CTTGAG	1 cut(s)	583
BsaAI	YACGTR	1 cut(s)	10
BsaI	GGTCTC	3 cut(s)	272, 330, 587
Bse1I	ACTGG	2 cut(s)	400, 730
BseGI	GGATG	2 cut(s)	436, 573
BseMII	CTCAG	2 cut(s)	287, 712
BseNI	ACTGG	2 cut(s)	400, 730
BseRI	GAGGAG	2 cut(s)	175, 330
BseXI	GCAGC	1 cut(s)	635
BsmAI	GTCTC	4 cut(s)	272, 330, 519, 587
BsmBI	CGTCTC	1 cut(s)	519
Bso31I	GGTCTC	3 cut(s)	272, 330, 587
Bsp143I	GATC	4 cut(s)	268, 352, 471, 687
BspCNI	CTCAG	2 cut(s)	288, 711
BspLI	GGNNCC	1 cut(s)	595
BspPI	GGATC	2 cut(s)	347, 682
BspTNI	GGTCTC	3 cut(s)	272, 330, 587
BsrI	ACTGG	2 cut(s)	400, 730
BssMI	GATC	4 cut(s)	268, 352, 471, 687
Bst4CI	ACNGT	2 cut(s)	79, 598
Bst6I	CTCTTC	1 cut(s)	401
BstBAI	YACGTR	1 cut(s)	10
BstC8I	GCNNGC	1 cut(s)	380
BstDEI	CTNAG	2 cut(s)	296, 698
BstF5I	GGATG	2 cut(s)	436, 573
BstKTI	GATC	4 cut(s)	271, 355, 474, 690
BstMAI	GTCTC	4 cut(s)	272, 330, 519, 587
BstMBI	GATC	4 cut(s)	268, 352, 471, 687
BstMWI	GCNNNNNNNGC	1 cut(s)	111
BstSFI	CTRYAG	1 cut(s)	767
BstV1I	GCAGC	1 cut(s)	635
BtsCI	GGATG	2 cut(s)	436, 573
BtsI	GCAGTG	3 cut(s)	121, 355, 743
BtsIMutI	CAGTG	3 cut(s)	121, 355, 743
Cac8I	GCNNGC	1 cut(s)	380
CaiI	CAGNNNCTG	1 cut(s)	388
Cfr13I	GGNCC	1 cut(s)	660
CseI	GACGC	1 cut(s)	536
Csp6I	GTAC	4 cut(s)	224, 487, 599, 611
CviAII	CATG	3 cut(s)	283, 305, 685
CviJI	RGCY	2 cut(s)	53, 648
CviKI_1	RGCY	2 cut(s)	53, 648
CviQI	GTAC	4 cut(s)	224, 487, 599, 611
DdeI	CTNAG	2 cut(s)	296, 698
DpnI	GATC	4 cut(s)	270, 354, 473, 689
DpnII	GATC	4 cut(s)	268, 352, 471, 687
Eam1104I	CTCTTC	1 cut(s)	401
EarI	CTCTTC	1 cut(s)	401
Eco31I	GGTCTC	3 cut(s)	272, 330, 587
Eco47I	GGWCC	1 cut(s)	660
Eco57I	CTGAAG	1 cut(s)	660
Esp3I	CGTCTC	1 cut(s)	519
FaeI	CATG	3 cut(s)	286, 308, 688
FaiI	YATR	7 cut(s)	68, 98, 196, 284, 306, 360, 686
FatI	CATG	3 cut(s)	282, 304, 684
Fnu4HI	GCNGC	1 cut(s)	649
FokI	GGATG	2 cut(s)	443, 580
Fsp4HI	GCNGC	1 cut(s)	649
FspBI	CTAG	4 cut(s)	57, 227, 753, 759
GluI	GCNGC	1 cut(s)	649
GsuI	CTGGAG	1 cut(s)	713
HgaI	GACGC	1 cut(s)	536
Hin1II	CATG	3 cut(s)	286, 308, 688
HinfI	GANTC	4 cut(s)	148, 301, 418, 696
HphI	GGTGA	2 cut(s)	171, 415
Hpy166II	GTNNAC	2 cut(s)	322, 487
Hpy188I	TCNGA	4 cut(s)	84, 471, 695, 701
Hpy188III	TCNNGA	3 cut(s)	335, 422, 562
Hpy8I	GTNNAC	2 cut(s)	322, 487
HpyAV	CCTTC	3 cut(s)	146, 211, 572
HpyCH4III	ACNGT	2 cut(s)	79, 598
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	5 cut(s)	194, 545, 571, 651, 736
HpyF10VI	GCNNNNNNNGC	1 cut(s)	111
HpyF3I	CTNAG	2 cut(s)	296, 698
HpySE526I	ACGT	1 cut(s)	9
Hsp92II	CATG	3 cut(s)	286, 308, 688
Kzo9I	GATC	4 cut(s)	268, 352, 471, 687
Lsp1109I	GCAGC	1 cut(s)	635
LweI	GCATC	3 cut(s)	29, 134, 558
MaeI	CTAG	4 cut(s)	57, 227, 753, 759
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	2 cut(s)	5, 451
MalI	GATC	4 cut(s)	270, 354, 473, 689
MboI	GATC	4 cut(s)	268, 352, 471, 687
MboII	GAAGA	3 cut(s)	418, 458, 653
MfeI	CAATTG	1 cut(s)	572
MluCI	AATT	5 cut(s)	87, 172, 233, 247, 572
MlyI	GAGTC	1 cut(s)	690
MmeI	TCCRAC	2 cut(s)	687, 718
MnlI	CCTC	8 cut(s)	193, 196, 291, 308, 402, 558, 701, 712
MseI	TTAA	1 cut(s)	369
MunI	CAATTG	1 cut(s)	572
MwoI	GCNNNNNNNGC	1 cut(s)	111
NdeII	GATC	4 cut(s)	268, 352, 471, 687
NlaIII	CATG	3 cut(s)	286, 308, 688
NlaIV	GGNNCC	1 cut(s)	595
NmuCI	GTSAC	1 cut(s)	5
PcsI	WCGNNNNNNNCGW	1 cut(s)	672
PfeI	GAWTC	3 cut(s)	148, 301, 418
PkrI	GCNGC	1 cut(s)	650
PleI	GAGTC	1 cut(s)	690
PpsI	GAGTC	1 cut(s)	690
Ppu21I	YACGTR	1 cut(s)	10
PspN4I	GGNNCC	1 cut(s)	595
PspPI	GGNCC	1 cut(s)	660
PsrI	GAACNNNNNNTAC	2 cut(s)	586, 618
PstNI	CAGNNNCTG	1 cut(s)	388
RsaI	GTAC	4 cut(s)	225, 488, 600, 612
RsaNI	GTAC	4 cut(s)	224, 487, 599, 611
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	1 cut(s)	649
Sau3AI	GATC	4 cut(s)	268, 352, 471, 687
Sau96I	GGNCC	1 cut(s)	660
SchI	GAGTC	1 cut(s)	690
SetI	ASST	6 cut(s)	12, 327, 342, 583, 650, 723
SfaNI	GCATC	3 cut(s)	29, 134, 558
SfcI	CTRYAG	1 cut(s)	767
SinI	GGWCC	1 cut(s)	660
SmlI	CTYRAG	1 cut(s)	562
SmoI	CTYRAG	1 cut(s)	562
SpeI	ACTAGT	1 cut(s)	226
Sse9I	AATT	5 cut(s)	87, 172, 233, 247, 572
SspMI	CTAG	4 cut(s)	57, 227, 753, 759
TaaI	ACNGT	2 cut(s)	79, 598
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	1 cut(s)	334
TaqII	GACCGA	1 cut(s)	28
TasI	AATT	5 cut(s)	87, 172, 233, 247, 572
TatI	WGTACW	1 cut(s)	610
TfiI	GAWTC	3 cut(s)	148, 301, 418
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TscAI	CASTG	3 cut(s)	121, 355, 743
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	1 cut(s)	648
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	2 cut(s)	293, 447
TspRI	CASTG	3 cut(s)	121, 355, 743
VpaK11BI	GGWCC	1 cut(s)	660
XapI	RAATTY	2 cut(s)	172, 233
XspI	CTAG	4 cut(s)	57, 227, 753, 759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.