Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001057

Physical Location & Seq

Genomic Coordinates Reverse (-)

38239375 .. 38240318

Gene Structure 944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG340200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGAGAATCTGGTGGGTCTTTTGCGGATCCACATTCAAAGAGGAGTGAATCTTGCCGTAAGAGACATGATAAGTAGTGATCCTTACCTCATTGTCAAAATGGGCAAGCAGAAATTGAAAACTCGCGTTGTGAAGCGGAATGTGAACCCTGAGTGGGACGAAAAATTGACTCTTACTGTTTCAGACCCAAATATTCCGGTTAAGCTCTTTGTATATGACAAAGATACTTTCACTTTTGATGACAAGATGGGTGATGCAGAGTTTGAGATTGCTACATTCGTTAAAGTAGTGCAGATGGGCTTGGAAGGTCTCCCAGACGGAACCATAATTGCGAAAGTTCAACCAACTAGGCAAAATTGCCTTGCCGAAGAGAGCCGCATTATTTGGTCCAACGGCAAAGTTGTGCAAAACATGGTTCTCAGACTCAGAAATGTCGAGCGTGGTGAAGTGGAACTCCAATTGCAGTGGATTCATGTTCCTCGTTCTATGGGTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0008047 GO:0008150 GO:0008289 GO:0009611 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0023051 GO:0023056 GO:0030234 GO:0030695 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0043900 GO:0043902 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0080134 GO:0098772 GO:1900424 GO:1900426 GO:1901000 GO:1901002 GO:1901419 GO:1901421 GO:1902477 GO:1902479 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

165

Amino Acids

18.93

Weight (kDa)

8.71

Isoelectric Point (pI)

40.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	6 - 93	2.9e-20	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70810 AT5G37740 AT5G37740
fragaria_vesca	FvH4_1g27320 FvH4_1g28670 FvH4_1g28680 FvH4_1g28690 FvH4_2g18820
malus_domestica	MD09G1278700.v1.1 MD09G1278800.v1.1 MD09G1278900.v1.1 MD09G1279000.v1.1 MD17G1260900.v1.1
prunus_persica	Prupe.3G162700_v2.0.a1 Prupe.3G162800_v2.0.a1 Prupe.3G162900_v2.0.a1 Prupe.3G162900_v2.0.a1
pyrus_communis	pycom09g17860 pycom09g17870 pycom09g17880 pycom09g17890 pycom17g26160
rosa_chinensis	RchiOBHm_Chr3g0492961 RchiOBHm_Chr3g0492971 RchiOBHm_Chr3g0492991
rosa_laevigata	RLG00000022734 RLG00000022736 RLG00000022737 RLG00000022739 RLG00000022740 RLG00000022741
rosa_multiflora	Rmu_co8406109.1_g000001 Rmu_sc0000395.1_g000015 Rmu_sc0000395.1_g000023 Rmu_sc0000395.1_g000029 Rmu_sc0008956.1_g000004 Rmu_sc0016690.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391990 Rroxscaffold_6G00392000 Rroxscaffold_6G00392010
rosa_rugosa	Rorug03G0256700 Rorug03G0257800 Rorug03G0258000 Rorug03G0258400 Rorug03G0258500 Rorug03G0258500
rosa_samantha	Rh3AG306200 Rh3AG307300 Rh3AG307500 Rh3BG342700 Rh3BG342800 Rh3BG342900 Rh3CG340000 Rh3CG340200 Rh3DG342000 Rh3DG342200 Rh3DG342400
rosa_wichuraiana	Rw3G027020 Rw3G027030 Rw3G027040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	126
AciI	CCGC	3 cut(s)	25, 136, 376
AclWI	GGATC	3 cut(s)	22, 35, 74
AfiI	CCNNNNNNNGG	1 cut(s)	154
AgsI	TTSAA	3 cut(s)	38, 118, 341
AluBI	AGCT	1 cut(s)	205
AluI	AGCT	1 cut(s)	205
Alw26I	GTCTC	2 cut(s)	57, 314
AlwI	GGATC	3 cut(s)	22, 35, 74
AspS9I	GGNCC	1 cut(s)	387
AsuHPI	GGTGA	2 cut(s)	263, 455
AvaII	GGWCC	1 cut(s)	387
BamHI	GGATCC	1 cut(s)	27
BccI	CCATC	2 cut(s)	241, 289
BceAI	ACGGC	2 cut(s)	41, 409
BcoDI	GTCTC	2 cut(s)	57, 314
BfaI	CTAG	1 cut(s)	348
BisI	GCNGC	1 cut(s)	376
BlsI	GCNGC	1 cut(s)	377
Bme18I	GGWCC	1 cut(s)	387
BmgT120I	GGNCC	1 cut(s)	387
BmiI	GGNNCC	2 cut(s)	29, 322
BmsI	GCATC	1 cut(s)	244
BsaI	GGTCTC	1 cut(s)	314
BsaWI	WCCGGW	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMII	CTCAG	3 cut(s)	141, 433, 439
BseRI	GAGGAG	1 cut(s)	57
BsgI	GTGCAG	1 cut(s)	311
Bsh1236I	CGCG	1 cut(s)	126
BsiSI	CCGG	1 cut(s)	197
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmAI	GTCTC	2 cut(s)	57, 314
BsmFI	GGGAC	1 cut(s)	170
Bso31I	GGTCTC	1 cut(s)	314
Bsp143I	GATC	2 cut(s)	27, 79
BspACI	CCGC	3 cut(s)	25, 136, 376
BspCNI	CTCAG	3 cut(s)	142, 432, 438
BspFNI	CGCG	1 cut(s)	126
BspLI	GGNNCC	2 cut(s)	29, 322
BspPI	GGATC	3 cut(s)	22, 35, 74
BspTNI	GGTCTC	1 cut(s)	314
BssMI	GATC	2 cut(s)	27, 79
Bst4CI	ACNGT	1 cut(s)	178
Bst6I	CTCTTC	1 cut(s)	363
BstC8I	GCNNGC	1 cut(s)	107
BstDEI	CTNAG	3 cut(s)	150, 419, 425
BstFNI	CGCG	1 cut(s)	126
BstKTI	GATC	2 cut(s)	30, 82
BstMAI	GTCTC	2 cut(s)	57, 314
BstMBI	GATC	2 cut(s)	27, 79
BstUI	CGCG	1 cut(s)	126
BstX2I	RGATCY	1 cut(s)	27
BstYI	RGATCY	1 cut(s)	27
BtsI	GCAGTG	1 cut(s)	470
BtsIMutI	CAGTG	1 cut(s)	470
Cac8I	GCNNGC	1 cut(s)	107
Cfr13I	GGNCC	1 cut(s)	387
CspCI	CAANNNNNGTGG	2 cut(s)	446, 481
CviAII	CATG	3 cut(s)	67, 412, 473
CviJI	RGCY	3 cut(s)	205, 300, 375
CviKI_1	RGCY	3 cut(s)	205, 300, 375
DdeI	CTNAG	3 cut(s)	150, 419, 425
DpnI	GATC	2 cut(s)	29, 81
DpnII	GATC	2 cut(s)	27, 79
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
Eco31I	GGTCTC	1 cut(s)	314
Eco47I	GGWCC	1 cut(s)	387
FaeI	CATG	3 cut(s)	70, 415, 476
FaiI	YATR	7 cut(s)	68, 214, 216, 326, 413, 474, 488
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	3 cut(s)	66, 411, 472
Fnu4HI	GCNGC	1 cut(s)	376
Fsp4HI	GCNGC	1 cut(s)	376
FspBI	CTAG	1 cut(s)	348
GluI	GCNGC	1 cut(s)	376
HapII	CCGG	1 cut(s)	197
Hin1II	CATG	3 cut(s)	70, 415, 476
HinfI	GANTC	5 cut(s)	7, 49, 169, 423, 469
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	2 cut(s)	263, 455
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	3 cut(s)	184, 422, 428
Hpy8I	GTNNAC	1 cut(s)	145
HpyAV	CCTTC	1 cut(s)	299
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4V	TGCA	4 cut(s)	257, 292, 406, 463
HpyF3I	CTNAG	3 cut(s)	150, 419, 425
Hsp92II	CATG	3 cut(s)	70, 415, 476
Kzo9I	GATC	2 cut(s)	27, 79
LpnPI	CCDG	3 cut(s)	162, 210, 327
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	491
MalI	GATC	2 cut(s)	29, 81
MboI	GATC	2 cut(s)	27, 79
MboII	GAAGA	1 cut(s)	380
MfeI	CAATTG	1 cut(s)	458
MflI	RGATCY	1 cut(s)	27
MluCI	AATT	5 cut(s)	113, 164, 327, 355, 458
MlyI	GAGTC	2 cut(s)	163, 417
MmeI	TCCRAC	1 cut(s)	414
MnlI	CCTC	3 cut(s)	35, 98, 489
MseI	TTAA	2 cut(s)	201, 282
MspI	CCGG	1 cut(s)	197
MunI	CAATTG	1 cut(s)	458
MvnI	CGCG	1 cut(s)	126
NdeII	GATC	2 cut(s)	27, 79
NlaIII	CATG	3 cut(s)	70, 415, 476
NlaIV	GGNNCC	2 cut(s)	29, 322
NmuCI	GTSAC	1 cut(s)	491
PfeI	GAWTC	3 cut(s)	7, 49, 469
PkrI	GCNGC	1 cut(s)	377
PleI	GAGTC	2 cut(s)	163, 417
PpsI	GAGTC	2 cut(s)	163, 417
PspN4I	GGNNCC	2 cut(s)	29, 322
PspPI	GGNCC	1 cut(s)	387
PsuI	RGATCY	1 cut(s)	27
SaqAI	TTAA	2 cut(s)	201, 282
SatI	GCNGC	1 cut(s)	376
Sau3AI	GATC	2 cut(s)	27, 79
Sau96I	GGNCC	1 cut(s)	387
SchI	GAGTC	2 cut(s)	163, 417
SetI	ASST	3 cut(s)	90, 207, 310
SfaNI	GCATC	1 cut(s)	244
SinI	GGWCC	1 cut(s)	387
Sse9I	AATT	5 cut(s)	113, 164, 327, 355, 458
SsiI	CCGC	3 cut(s)	25, 136, 376
SspI	AATATT	1 cut(s)	193
SspMI	CTAG	1 cut(s)	348
TaaI	ACNGT	1 cut(s)	178
TaqI	TCGA	1 cut(s)	435
TasI	AATT	5 cut(s)	113, 164, 327, 355, 458
TauI	GCSGC	1 cut(s)	378
TfiI	GAWTC	3 cut(s)	7, 49, 469
Tru1I	TTAA	2 cut(s)	201, 282
Tru9I	TTAA	2 cut(s)	201, 282
TscAI	CASTG	1 cut(s)	470
TseFI	GTSAC	1 cut(s)	491
Tsp45I	GTSAC	1 cut(s)	491
TspDTI	ATGAA	1 cut(s)	461
TspGWI	ACGGA	1 cut(s)	333
TspRI	CASTG	1 cut(s)	470
VpaK11BI	GGWCC	1 cut(s)	387
XspI	CTAG	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.