Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003377

Physical Location & Seq

Genomic Coordinates Forward (+)

15551243 .. 15555077

Gene Structure 3835 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G38840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2208 bp

ATGACTACATCGGCGATGGATCCTCCTCCACCGCGAAACCCTAGCCATGATATCGAGCCTCCTGAACCAAACAGTACATCAATTTCCCAAAGCGATGAAACCTCAACGATGAATCCTCCACCTCCCAGAAACCCTAACCCACCTGATCTGAAGACAACGGAAGTAGTTGTAGAGCCCGAGCCAATAGAGGAATCCAAGGACGATTCCGTCACTGTAGACGCGGATAAACCAGTTCGTCCCCGAACCGTGAAGCAGAATCCTGTCCCCTACACTATTCCAGAGTGGAGTGGCCCTCCGTGTCACCAATTTCAGCTTGAAGTTCTCAAAGAAGGCGCCATTGTTGAGAAATTAGACGTCTATAAGAAAGGAGCTTACTTGTTTGGACGTGATGGTATCTGTGATTTTGCTCTTGAGCACCCTTCGATTTCTCGGTTTCATGCAGTTATTCAGTACAAGAGGAGTGGAGCTGCGTATATATTTGATCTTGGAAGCACGCATGGAACAACTGTTAACAAGAATAAGGTGGATAAAAAGGTTTTTGTGGATTTGAATGTCGGTGATGTTATTCGCTTTGGCGGTTCGACTAGATTATACATTTTCCAAGGACCCTCGGACTTAATGCCACCAGAGAAAGACTTACAATTAATTAGAGAAGCAAAGATGAGAATGGAAATGTCAGAACGAGAAGCTTCACTGCGACGAGCAAGGCAGCAAGCATCCATGGCTGATGGTGTTTCATGGGGCATGGGGGAAGATGCTATTGAAGAAGAAGAGGATGATGTTGAGGAAATTACTTGGCAAACATATAGTGGAGAACTCACTCCAAAGCAAGAAAAAACTAAGGAGAAAGTACTGAAACGGTTGGAGAAGATCGGCCATATGAAGAAGGAAGTAGCAGCTATTCGAGCCAAAGACATTTCTCAGGGTGGATTGACACAAGGACAACAAACGCAGATCGCTAGGAATGAGCAGAGAACGGCTGAGCTTCTGGAAGAACTTGAGAACTTGGAAGAGACACTGAATGACAGCATCCGGGAAAGTTTGGGTGCCAAAACAGGGAGAAAACCCACCCACGGAAAGAAGAAAGGAATTGTAGAAGATGAGGAAGACTTGTCGAGTGATGAAGATGACTTCTATGACCGGACCCAGAAGAAACCATCAACAAAGAAAGGCAGCGAAAACCAAACTGTAGAAACTGTTGATTCACTTGTAGATAAGAGAGACAATGTCTTGAAAGAAATAGAAGCAAAGAATGAACAGCTTTTAACAGAGAAGAGTAAGATGGAGACAGAGAATGTCACAGAGGTTACATCGGGAGACTCCCTTGATGCCCTTGATGCATACATGACCGGGCTTTCTACAACACTTGTGCAAGATAAAACCGCCCAGATCCAGCAAGAGTTGTCTACTCTACAGTCAGAATTAAGTAGGATCTTATACCTTCTAAAGATTGCTGACCCAACCGGAGAAGAGGTTAAGAAAAGGGAGTTGAAGTCACAAGAATTAAAAATAAAGAAATCTGAAACACCTTCCGTAGAAAAGAAGATCAATATACCTTTAAAACAAGCTGATCCTAATGAGCATAAGGAGAAAGAAGTGGCCAAAGATTTAGTGGACTCAGAAAATAAGCCTGAAGTAGAAAATAAAGCAAGTGAAACAGCTGAAGAAAAGAAGACCACTGTGTATGTTCCATCAAAACCCCAATGGCTCGGTTCCGCTGCAAATAAAGCCATAATTGAAGAAAAAAACCCTGAGATAGTAGCTGCTACTACTGATAGCACAGAGGATGCTGATGGGTTTGTCGACTATAAAAATAGGAAGAATATTGCTCTAACAGCCACCGCTGGAGTTGAAGTTGTAACAGGGTTGATAATAAGAAAACGTAAGCAAGAAGACAAGAGCGAAGAAGATGATGATTCAAAGGAAAAGCAAGCAGAGGTCATGGCACAGGATGCAGTTGCTCTCTTATTGAAACATTCTGTAGGCCATCATGTAAACGAAGAAGACAAAGAACTCAGTAAACAGGAAGAAAATAATCAAGGAAGTGGCCAAAGTAAAACGAAGAAGAAGAAGAAGACGGCTAAAAAAGTAGTTGGTCCTGATAAACCAGAATATCTGGATGAAACCATAGATTATGATTCTTGGGTACCTCCTGCAGGACAATCTGGTGATGGGCGAACATCTCTAAATGACCGTCTGGGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

735

Amino Acids

82.12

Weight (kDa)

5.03

Isoelectric Point (pI)

48.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Yop-YscD_cpl	PF16697	121 - 192	1.3e-06	Inner membrane component of T3SS, cytoplasmic domain
FHA	PF00498	125 - 192	8.2e-20	FHA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38840
fragaria_vesca	FvH4_6g46110 FvH4_6g46110 FvH4_6g46110 FvH4_6g46110
malus_domestica	MD09G1076900.v1.1
prunus_persica	Prupe.3G247200_v2.0.a1
pyrus_communis	pycom09g00410
rosa_chinensis	RchiOBHm_Chr2g0164301 RchiOBHm_Chr2g0164311 RchiOBHm_Chr2g0164441 RchiOBHm_Chr2g0164481
rosa_laevigata	RLG00000021452 RLG00000021462
rosa_multiflora	Rmu_sc0000144.1_g000022 Rmu_sc0002082.1_g000003 Rmu_sc0007154.1_g000011 Rmu_sc0020353.1_g000001 Rmu_sc0024157.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086560 Rroxscaffold_2G00086640
rosa_rugosa	Rorug02G0508000 Rorug02G0508500 Rorug02G0508700
rosa_samantha	Rh2AG575900 Rh2AG576000 Rh2AG576700 Rh2BG587700 Rh2CG557600 Rh2CG557700 Rh2CG557800 Rh2CG558500 Rh2DG596400 Rh2DG598200
rosa_wichuraiana	Rw2G047780 Rw2G047870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	206
AatII	GACGTC	1 cut(s)	357
Acc65I	GGTACC	1 cut(s)	2146
AccB1I	GGYRCC	3 cut(s)	332, 1046, 2146
AccI	GTMKAC	3 cut(s)	216, 1406, 1803
AccII	CGCG	2 cut(s)	34, 221
AciI	CCGC	6 cut(s)	32, 221, 576, 1383, 1716, 1842
AclWI	GGATC	5 cut(s)	14, 27, 1384, 1439, 1565
AcoI	YGGCCR	3 cut(s)	874, 1599, 2047
AcuI	CTGAAG	3 cut(s)	170, 1653, 1683
AcyI	GRCGYC	2 cut(s)	333, 354
AfaI	GTAC	4 cut(s)	76, 452, 852, 2148
AfiI	CCNNNNNNNGG	3 cut(s)	1056, 1073, 2156
AgsI	TTSAA	9 cut(s)	317, 550, 764, 1234, 1492, 1739, 1853, 1920, 1972
AjiI	CACGTC	1 cut(s)	386
Alw21I	GWGCWC	1 cut(s)	417
Alw26I	GTCTC	4 cut(s)	1007, 1215, 1280, 1311
AlwI	GGATC	5 cut(s)	14, 27, 1384, 1439, 1565
Ama87I	CYCGRG	1 cut(s)	176
AoxI	GGCC	5 cut(s)	289, 874, 1599, 1984, 2047
ApeKI	GCWGC	6 cut(s)	467, 709, 896, 1173, 1718, 1763
AseI	ATTAAT	1 cut(s)	644
Asp718I	GGTACC	1 cut(s)	2146
AspLEI	GCGC	1 cut(s)	335
AspS9I	GGNCC	4 cut(s)	290, 605, 1143, 2096
AsuC2I	CCSGG	2 cut(s)	1034, 1351
AsuHPI	GGTGA	3 cut(s)	293, 569, 2180
AvaI	CYCGRG	1 cut(s)	176
AvaII	GGWCC	3 cut(s)	605, 1143, 2096
BalI	TGGCCA	2 cut(s)	1601, 2049
BamHI	GGATCC	1 cut(s)	19
BanI	GGYRCC	3 cut(s)	332, 1046, 2146
BanII	GRGCYC	1 cut(s)	177
BbsI	GAAGAC	6 cut(s)	158, 1113, 1679, 1899, 2010, 2081
Bbv12I	GWGCWC	1 cut(s)	417
BbvI	GCAGC	6 cut(s)	454, 721, 908, 1185, 1705, 1750
BccI	CCATC	9 cut(s)	10, 383, 722, 1165, 1276, 1699, 1787, 1995, 2165
BceAI	ACGGC	2 cut(s)	993, 2094
BcnI	CCSGG	2 cut(s)	1034, 1351
BcoDI	GTCTC	4 cut(s)	1007, 1215, 1280, 1311
BfaI	CTAG	3 cut(s)	42, 585, 960
BfmI	CTRYAG	5 cut(s)	213, 1188, 1412, 1980, 2154
BfoI	RGCGCY	1 cut(s)	336
BisI	GCNGC	6 cut(s)	468, 710, 897, 1174, 1719, 1764
BlpI	GCTNAGC	1 cut(s)	981
BlsI	GCNGC	6 cut(s)	469, 711, 898, 1175, 1720, 1765
BmcAI	AGTACT	1 cut(s)	852
Bme1390I	CCNGG	2 cut(s)	1034, 1351
Bme18I	GGWCC	3 cut(s)	605, 1143, 2096
BmeT110I	CYCGRG	1 cut(s)	176
BmgBI	CACGTC	1 cut(s)	386
BmgT120I	GGNCC	4 cut(s)	290, 605, 1143, 2096
BmiI	GGNNCC	7 cut(s)	21, 334, 607, 1048, 1145, 1714, 2148
BmrFI	CCNGG	2 cut(s)	1034, 1351
BmsI	GCATC	7 cut(s)	725, 745, 1038, 1318, 1327, 1777, 1942
BpiI	GAAGAC	6 cut(s)	158, 1113, 1679, 1899, 2010, 2081
BplI	GAGNNNNNCTC	2 cut(s)	277, 309
BpmI	CTGGAG	1 cut(s)	1866
Bpu1102I	GCTNAGC	1 cut(s)	981
BpuEI	CTTGAG	2 cut(s)	431, 1019
BpuMI	CCSGG	2 cut(s)	1034, 1351
BsaHI	GRCGYC	2 cut(s)	333, 354
BsaJI	CCNNGG	5 cut(s)	195, 601, 609, 720, 1072
BsaWI	WCCGGW	2 cut(s)	1140, 1463
BsaXI	ACNNNNNCTCC	6 cut(s)	1458, 1478, 1488, 1508, 1839, 1869
Bsc4I	CCNNNNNNNGG	3 cut(s)	1056, 1073, 2156
Bse1I	ACTGG	1 cut(s)	230
BseDI	CCNNGG	5 cut(s)	195, 601, 609, 720, 1072
BseGI	GGATG	6 cut(s)	716, 781, 1029, 1792, 1957, 2125
BseLI	CCNNNNNNNGG	3 cut(s)	1056, 1073, 2156
BseMII	CTCAG	5 cut(s)	935, 972, 1632, 1743, 2029
BseNI	ACTGG	1 cut(s)	230
BseRI	GAGGAG	2 cut(s)	15, 472
BseXI	GCAGC	6 cut(s)	454, 721, 908, 1185, 1705, 1750
Bsh1236I	CGCG	2 cut(s)	34, 221
BshFI	GGCC	5 cut(s)	291, 876, 1601, 1986, 2049
BshNI	GGYRCC	3 cut(s)	332, 1046, 2146
BsiHKAI	GWGCWC	1 cut(s)	417
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	4 cut(s)	1033, 1141, 1350, 1464
BslFI	GGGAC	2 cut(s)	222, 248
BslI	CCNNNNNNNGG	3 cut(s)	1056, 1073, 2156
BsmAI	GTCTC	4 cut(s)	1007, 1215, 1280, 1311
BsmFI	GGGAC	2 cut(s)	222, 248
BsnI	GGCC	5 cut(s)	291, 876, 1601, 1986, 2049
BsoBI	CYCGRG	1 cut(s)	176
Bsp1286I	GDGCHC	2 cut(s)	177, 417
Bsp143I	GATC	9 cut(s)	19, 145, 481, 870, 954, 1389, 1431, 1545, 1570
Bsp1720I	GCTNAGC	1 cut(s)	981
Bsp19I	CCATGG	1 cut(s)	720
BspACI	CCGC	6 cut(s)	32, 221, 576, 1383, 1716, 1842
BspANI	GGCC	5 cut(s)	291, 876, 1601, 1986, 2049
BspCNI	CTCAG	5 cut(s)	934, 973, 1631, 1744, 2028
BspFNI	CGCG	2 cut(s)	34, 221
BspLI	GGNNCC	7 cut(s)	21, 334, 607, 1048, 1145, 1714, 2148
BspMAI	CTGCAG	1 cut(s)	2158
BspPI	GGATC	5 cut(s)	14, 27, 1384, 1439, 1565
BspT107I	GGYRCC	3 cut(s)	332, 1046, 2146
BsrI	ACTGG	1 cut(s)	230
BssECI	CCNNGG	5 cut(s)	195, 601, 609, 720, 1072
BssMI	GATC	9 cut(s)	19, 145, 481, 870, 954, 1389, 1431, 1545, 1570
BssNI	GRCGYC	2 cut(s)	333, 354
BssT1I	CCWWGG	3 cut(s)	195, 601, 720
Bst6I	CTCTTC	4 cut(s)	765, 1005, 1268, 1464
BstACI	GRCGYC	2 cut(s)	333, 354
BstAPI	GCANNNNNTGC	1 cut(s)	1952
BstC8I	GCNNGC	3 cut(s)	494, 714, 1932
BstDEI	CTNAG	6 cut(s)	840, 921, 981, 1618, 1752, 2015
BstDSI	CCRYGG	2 cut(s)	720, 1072
BstENI	CCTNNNNNAGG	1 cut(s)	2154
BstF5I	GGATG	6 cut(s)	716, 781, 1029, 1792, 1957, 2125
BstFNI	CGCG	2 cut(s)	34, 221
BstH2I	RGCGCY	1 cut(s)	336
BstHHI	GCGC	1 cut(s)	335
BstKTI	GATC	9 cut(s)	22, 148, 484, 873, 957, 1392, 1434, 1548, 1573
BstMAI	GTCTC	4 cut(s)	1007, 1215, 1280, 1311
BstMBI	GATC	9 cut(s)	19, 145, 481, 870, 954, 1389, 1431, 1545, 1570
BstMWI	GCNNNNNNNGC	6 cut(s)	722, 905, 1337, 1727, 1835, 1952
BstSCI	CCNGG	2 cut(s)	1032, 1349
BstSFI	CTRYAG	5 cut(s)	213, 1188, 1412, 1980, 2154
BstUI	CGCG	2 cut(s)	34, 221
BstV1I	GCAGC	6 cut(s)	454, 721, 908, 1185, 1705, 1750
BstV2I	GAAGAC	6 cut(s)	158, 1113, 1679, 1899, 2010, 2081
BstX2I	RGATCY	3 cut(s)	19, 1389, 1431
BstYI	RGATCY	3 cut(s)	19, 1389, 1431
BsuRI	GGCC	5 cut(s)	291, 876, 1601, 1986, 2049
BtgI	CCRYGG	2 cut(s)	720, 1072
BtgZI	GCGATG	2 cut(s)	29, 108
BtrI	CACGTC	1 cut(s)	386
BtsCI	GGATG	6 cut(s)	716, 781, 1029, 1792, 1957, 2125
BtsI	GCAGTG	1 cut(s)	692
BtsIMutI	CAGTG	4 cut(s)	210, 692, 1016, 1677
Cac8I	GCNNGC	3 cut(s)	494, 714, 1932
CfoI	GCGC	1 cut(s)	335
Cfr13I	GGNCC	4 cut(s)	290, 605, 1143, 2096
CseI	GACGC	1 cut(s)	227
Csp6I	GTAC	4 cut(s)	75, 451, 851, 2147
CspCI	CAANNNNNGTGG	2 cut(s)	442, 477
CviAII	CATG	9 cut(s)	47, 437, 497, 721, 738, 745, 1345, 1942, 1991
CviQI	GTAC	4 cut(s)	75, 451, 851, 2147
DdeI	CTNAG	6 cut(s)	840, 921, 981, 1618, 1752, 2015
DinI	GGCGCC	1 cut(s)	334
DpnI	GATC	9 cut(s)	21, 147, 483, 872, 956, 1391, 1433, 1547, 1572
DpnII	GATC	9 cut(s)	19, 145, 481, 870, 954, 1389, 1431, 1545, 1570
DraI	TTTAAA	1 cut(s)	1560
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
EaeI	YGGCCR	3 cut(s)	874, 1599, 2047
Eam1104I	CTCTTC	4 cut(s)	765, 1005, 1268, 1464
EarI	CTCTTC	4 cut(s)	765, 1005, 1268, 1464
Eco130I	CCWWGG	3 cut(s)	195, 601, 720
Eco24I	GRGCYC	1 cut(s)	177
Eco32I	GATATC	1 cut(s)	52
Eco47I	GGWCC	3 cut(s)	605, 1143, 2096
Eco57I	CTGAAG	3 cut(s)	170, 1653, 1683
Eco88I	CYCGRG	1 cut(s)	176
EcoNI	CCTNNNNNAGG	1 cut(s)	2154
EcoO109I	RGGNCCY	1 cut(s)	605
EcoRV	GATATC	1 cut(s)	52
EcoT14I	CCWWGG	3 cut(s)	195, 601, 720
EcoT22I	ATGCAT	1 cut(s)	1342
EcoT38I	GRGCYC	1 cut(s)	177
EgeI	GGCGCC	1 cut(s)	334
EheI	GGCGCC	1 cut(s)	334
ErhI	CCWWGG	3 cut(s)	195, 601, 720
FaeI	CATG	9 cut(s)	50, 440, 500, 724, 741, 748, 1348, 1945, 1994
FaqI	GGGAC	2 cut(s)	222, 248
FatI	CATG	9 cut(s)	46, 436, 496, 720, 737, 744, 1344, 1941, 1990
FauNDI	CATATG	1 cut(s)	879
FblI	GTMKAC	3 cut(s)	216, 1406, 1803
Fnu4HI	GCNGC	6 cut(s)	468, 710, 897, 1174, 1719, 1764
FokI	GGATG	6 cut(s)	703, 788, 1016, 1799, 1964, 2132
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	6 cut(s)	468, 710, 897, 1174, 1719, 1764
FspBI	CTAG	3 cut(s)	42, 585, 960
GlaI	GCGC	1 cut(s)	334
GluI	GCNGC	6 cut(s)	468, 710, 897, 1174, 1719, 1764
GsuI	CTGGAG	1 cut(s)	1866
HaeII	RGCGCY	1 cut(s)	336
HaeIII	GGCC	5 cut(s)	291, 876, 1601, 1986, 2049
HapII	CCGG	4 cut(s)	1033, 1141, 1350, 1464
HgaI	GACGC	1 cut(s)	227
HhaI	GCGC	1 cut(s)	335
Hin1I	GRCGYC	2 cut(s)	333, 354
Hin1II	CATG	9 cut(s)	50, 440, 500, 724, 741, 748, 1348, 1945, 1994
Hin6I	GCGC	1 cut(s)	333
HinP1I	GCGC	1 cut(s)	333
HincII	GTYRAC	2 cut(s)	511, 1804
HindII	GTYRAC	2 cut(s)	511, 1804
HindIII	AAGCTT	1 cut(s)	687
HinfI	GANTC	9 cut(s)	112, 191, 203, 256, 1202, 1319, 1616, 1916, 2138
HpaI	GTTAAC	1 cut(s)	511
HpaII	CCGG	4 cut(s)	1033, 1141, 1350, 1464
HphI	GGTGA	3 cut(s)	293, 569, 2180
Hpy166II	GTNNAC	7 cut(s)	217, 511, 1407, 1615, 1804, 1996, 2021
Hpy188I	TCNGA	6 cut(s)	150, 613, 679, 1420, 1522, 1621
Hpy188III	TCNNGA	8 cut(s)	62, 278, 410, 989, 1231, 1314, 2099, 2117
Hpy8I	GTNNAC	7 cut(s)	217, 511, 1407, 1615, 1804, 1996, 2021
Hpy99I	CGWCG	1 cut(s)	702
HpyAV	CCTTC	5 cut(s)	323, 429, 880, 1451, 1539
HpyCH4IV	ACGT	3 cut(s)	354, 385, 1882
HpyCH4V	TGCA	6 cut(s)	440, 1340, 1372, 1721, 1955, 2156
HpyF10VI	GCNNNNNNNGC	6 cut(s)	722, 905, 1337, 1727, 1835, 1952
HpyF3I	CTNAG	6 cut(s)	840, 921, 981, 1618, 1752, 2015
HpySE526I	ACGT	3 cut(s)	354, 385, 1882
Hsp92I	GRCGYC	2 cut(s)	333, 354
Hsp92II	CATG	9 cut(s)	50, 440, 500, 724, 741, 748, 1348, 1945, 1994
HspAI	GCGC	1 cut(s)	333
KasI	GGCGCC	1 cut(s)	332
KpnI	GGTACC	1 cut(s)	2150
KspAI	GTTAAC	1 cut(s)	511
Kzo9I	GATC	9 cut(s)	19, 145, 481, 870, 954, 1389, 1431, 1545, 1570
LmnI	GCTCC	2 cut(s)	368, 464
Lsp1109I	GCAGC	6 cut(s)	454, 721, 908, 1185, 1705, 1750
LweI	GCATC	7 cut(s)	725, 745, 1038, 1318, 1327, 1777, 1942
MaeI	CTAG	3 cut(s)	42, 585, 960
MaeII	ACGT	3 cut(s)	354, 385, 1882
MaeIII	GTNAC	6 cut(s)	208, 299, 1297, 1306, 1494, 1858
MalI	GATC	9 cut(s)	21, 147, 483, 872, 956, 1391, 1433, 1547, 1572
MboI	GATC	9 cut(s)	19, 145, 481, 870, 954, 1389, 1431, 1545, 1570
MflI	RGATCY	3 cut(s)	19, 1389, 1431
MhlI	GDGCHC	2 cut(s)	177, 417
MlsI	TGGCCA	2 cut(s)	1601, 2049
MluNI	TGGCCA	2 cut(s)	1601, 2049
Mly113I	GGCGCC	1 cut(s)	333
MlyI	GAGTC	2 cut(s)	1313, 1610
MmeI	TCCRAC	1 cut(s)	843
Mox20I	TGGCCA	2 cut(s)	1601, 2049
Mph1103I	ATGCAT	1 cut(s)	1342
MscI	TGGCCA	2 cut(s)	1601, 2049
MseI	TTAA	8 cut(s)	510, 617, 644, 1265, 1424, 1476, 1505, 1559
Msp20I	TGGCCA	2 cut(s)	1601, 2049
MspA1I	CMGCKG	3 cut(s)	1661, 1718, 1844
MspI	CCGG	4 cut(s)	1033, 1141, 1350, 1464
MspR9I	CCNGG	2 cut(s)	1034, 1351
MvnI	CGCG	2 cut(s)	34, 221
MwoI	GCNNNNNNNGC	6 cut(s)	722, 905, 1337, 1727, 1835, 1952
NarI	GGCGCC	1 cut(s)	333
NciI	CCSGG	2 cut(s)	1034, 1351
NcoI	CCATGG	1 cut(s)	720
NdeI	CATATG	1 cut(s)	879
NdeII	GATC	9 cut(s)	19, 145, 481, 870, 954, 1389, 1431, 1545, 1570
NlaIII	CATG	9 cut(s)	50, 440, 500, 724, 741, 748, 1348, 1945, 1994
NlaIV	GGNNCC	7 cut(s)	21, 334, 607, 1048, 1145, 1714, 2148
NmuCI	GTSAC	4 cut(s)	208, 299, 1297, 1494
NsiI	ATGCAT	1 cut(s)	1342
PfeI	GAWTC	7 cut(s)	112, 191, 203, 256, 1202, 1916, 2138
PflFI	GACNNNGTC	1 cut(s)	1226
PfoI	TCCNGGA	1 cut(s)	1032
PkrI	GCNGC	6 cut(s)	469, 711, 898, 1175, 1720, 1765
PleI	GAGTC	2 cut(s)	1313, 1610
PluTI	GGCGCC	1 cut(s)	336
PpsI	GAGTC	2 cut(s)	1313, 1610
PpuMI	RGGWCCY	1 cut(s)	605
PshBI	ATTAAT	1 cut(s)	644
Psp5II	RGGWCCY	1 cut(s)	605
PspN4I	GGNNCC	7 cut(s)	21, 334, 607, 1048, 1145, 1714, 2148
PspPI	GGNCC	4 cut(s)	290, 605, 1143, 2096
PspPPI	RGGWCCY	1 cut(s)	605
PstI	CTGCAG	1 cut(s)	2158
PsuI	RGATCY	3 cut(s)	19, 1389, 1431
PsyI	GACNNNGTC	1 cut(s)	1226
PvuII	CAGCTG	1 cut(s)	1661
RsaI	GTAC	4 cut(s)	76, 452, 852, 2148
RsaNI	GTAC	4 cut(s)	75, 451, 851, 2147
SalI	GTCGAC	1 cut(s)	1802
SaqAI	TTAA	8 cut(s)	510, 617, 644, 1265, 1424, 1476, 1505, 1559
SatI	GCNGC	6 cut(s)	468, 710, 897, 1174, 1719, 1764
Sau3AI	GATC	9 cut(s)	19, 145, 481, 870, 954, 1389, 1431, 1545, 1570
Sau96I	GGNCC	4 cut(s)	290, 605, 1143, 2096
SbfI	CCTGCAGG	1 cut(s)	2158
ScaI	AGTACT	1 cut(s)	852
SchI	GAGTC	2 cut(s)	1313, 1610
ScrFI	CCNGG	2 cut(s)	1034, 1351
SdaI	CCTGCAGG	1 cut(s)	2158
SduI	GDGCHC	2 cut(s)	177, 417
SfaNI	GCATC	7 cut(s)	725, 745, 1038, 1318, 1327, 1777, 1942
SfcI	CTRYAG	5 cut(s)	213, 1188, 1412, 1980, 2154
SfoI	GGCGCC	1 cut(s)	334
SinI	GGWCC	3 cut(s)	605, 1143, 2096
SmlI	CTYRAG	2 cut(s)	410, 998
SmoI	CTYRAG	2 cut(s)	410, 998
Sse8387I	CCTGCAGG	1 cut(s)	2158
SsiI	CCGC	6 cut(s)	32, 221, 576, 1383, 1716, 1842
SspDI	GGCGCC	1 cut(s)	332
SspI	AATATT	1 cut(s)	1825
SspMI	CTAG	3 cut(s)	42, 585, 960
StyD4I	CCNGG	2 cut(s)	1032, 1349
StyI	CCWWGG	3 cut(s)	195, 601, 720
TaiI	ACGT	3 cut(s)	357, 388, 1885
TaqI	TCGA	6 cut(s)	54, 422, 581, 904, 1115, 1803
TatI	WGTACW	3 cut(s)	74, 450, 850
TfiI	GAWTC	7 cut(s)	112, 191, 203, 256, 1202, 1916, 2138
Tru1I	TTAA	8 cut(s)	510, 617, 644, 1265, 1424, 1476, 1505, 1559
Tru9I	TTAA	8 cut(s)	510, 617, 644, 1265, 1424, 1476, 1505, 1559
TscAI	CASTG	4 cut(s)	217, 699, 1023, 1684
TseFI	GTSAC	4 cut(s)	208, 299, 1297, 1494
TseI	GCWGC	6 cut(s)	467, 709, 896, 1173, 1718, 1763
Tsp45I	GTSAC	4 cut(s)	208, 299, 1297, 1494
TspDTI	ATGAA	8 cut(s)	111, 125, 425, 726, 896, 1137, 1269, 2136
TspGWI	ACGGA	5 cut(s)	173, 196, 285, 1089, 1522
TspRI	CASTG	4 cut(s)	217, 699, 1023, 1684
Tth111I	GACNNNGTC	1 cut(s)	1226
VpaK11BI	GGWCC	3 cut(s)	605, 1143, 2096
VspI	ATTAAT	1 cut(s)	644
XagI	CCTNNNNNAGG	1 cut(s)	2154
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1609
XmiI	GTMKAC	3 cut(s)	216, 1406, 1803
XspI	CTAG	3 cut(s)	42, 585, 960
ZraI	GACGTC	1 cut(s)	355
ZrmI	AGTACT	1 cut(s)	852
Zsp2I	ATGCAT	1 cut(s)	1342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.