Rmu_sc0020353.1_g000001

Inner membrane component of T3SS, cytoplasmic domain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020353.1
Physical Location & Seq
Forward (+)
1999 .. 5672
3674 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020353.1_g000001.1.cds

Sequence Viewer

Length: 1476 bp
ctgctaacacttgctgtgctgattttcttcttgctagtgcttgataaaactgagcaattgcaaacggaactctcagatctccagtccgaatatgacagggtagtcttccttttgaagattgctgatccaacaggtgaagcagccaagaaaagggattcaaaggtgcttcctgaatatactgaaacttgtgctgctgccatcaagaagcaacatccacttaaaccaaaggaaacctgtccgcctgaaaatccagaaagtggctgtataaaggaagaggaaagtacagatgtgagtgttgcatctagcaagaagctggagtcaggtgaggttctcactgatgcaactgaaggaaaaagtgttgtgtatactgttgcaaagccccagtggcttggagctatagtggacaagaagatggtggagggtcatcaagaggcagcatctacgaataagcacgagtctgaagtatttgtggactataaagacagaaagaagattttggagaatgaagttgacatggaatctgggattgaaaatgctgcgcctggtttgattataaggaaacgaaaacaagttcatgaatctgaagctagtgatgattctcatcaactttcgacatcttcctccacaggagctggactcgtggcagaggatgctgtagcactgttgttgaagcataacagaggctattatgcatcagatgatgataaatcctctgaatgccaagatacgtcacaagggaaacaacagagcaagggtaaaaagcccaaaaaaagagtacttggtcccgagagaccttcatttcttgatagtgattctactgaaacatgggtgcctcctgaaggtaaagctaatttgattccatgttctggcctgccccgcgtgcgcccctgcgcacactgctgccaccgaagcatccctgcacctagccccttgctagcccgctgctcctgcagccctttcggcctgcatacctgccagcgcgcccccgcgctcaattcgctgccttgcagccccgcgcccgtgcgtccaccccacgctgcccctgcagcgtccctgctgccccgcgcacacctgcgcacgctgctgccccgcctacgcacccgtgcacctgcagccctacaacactgctgctgccccgcattcgctgcacgcttctactcggattgcttcgctccatcacgcctgcatcgacacgcgcgggatccaaaaccaaaaagtaagtatccaaaagcgatgtcgaaacttgactttcctgcacttacctcaactggctcggaataccatagttgggccacggatgttgagcaccatctcacttcaaaagggatcctacccttaattcaacctcctaatcctactctcatatttgagcgtacggctacgaacaatgccaccgccctcatcttgatgaggcgccacatggataaatcactccgactggagtacatggcaatcaaggatgctagagaattatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

491

Amino Acids

54.05

Weight (kDa)

8.48

Isoelectric Point (pI)

52.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 554
AarI CACCTGC 2 cut(s) 1080, 1117
AasI GACNNNNNNGTC 1 cut(s) 101
Acc16I TGCGCA 2 cut(s) 892, 1076
Acc36I ACCTGC 3 cut(s) 980, 1080, 1117
AccB1I GGYRCC 2 cut(s) 829, 1413
AccB7I CCANNNNNTGG 2 cut(s) 257, 866
AccI GTMKAC 1 cut(s) 365
AccII CGCG 7 cut(s) 879, 981, 989, 1016, 1065, 1196, 1198
AclWI GGATC 5 cut(s) 119, 1196, 1209, 1321, 1334
AcuI CTGAAG 4 cut(s) 366, 480, 603, 858
AcyI GRCGYC 1 cut(s) 1414
AfaI GTAC 4 cut(s) 283, 777, 1375, 1445
AfiI CCNNNNNNNGG 5 cut(s) 150, 257, 839, 866, 1288
AgsI TTSAA 6 cut(s) 115, 159, 530, 670, 1320, 1343
AjnI CCWGG 1 cut(s) 541
AluBI AGCT 5 cut(s) 313, 395, 587, 632, 848
AluI AGCT 5 cut(s) 313, 395, 587, 632, 848
Alw21I GWGCWC 2 cut(s) 1108, 1308
Alw26I GTCTC 1 cut(s) 784
Alw44I GTGCAC 1 cut(s) 1104
AlwI GGATC 5 cut(s) 119, 1196, 1209, 1321, 1334
AlwNI CAGNNNCTG 1 cut(s) 632
Ama87I CYCGRG 1 cut(s) 785
AoxI GGCC 3 cut(s) 868, 961, 1290
ApaLI GTGCAC 1 cut(s) 1104
ArsI GACNNNNNNTTYG 2 cut(s) 1220, 1252
AspS9I GGNCC 2 cut(s) 782, 1290
AsuHPI GGTGA 2 cut(s) 146, 335
AsuNHI GCTAGC 1 cut(s) 934
AvaI CYCGRG 1 cut(s) 785
AvaII GGWCC 1 cut(s) 782
BaeGI GKGCMC 1 cut(s) 1108
BamHI GGATCC 2 cut(s) 1201, 1326
BanI GGYRCC 2 cut(s) 829, 1413
BauI CACGAG 2 cut(s) 452, 638
BbsI GAAGAC 1 cut(s) 97
Bbv12I GWGCWC 2 cut(s) 1108, 1308
BccI CCATC 4 cut(s) 206, 406, 1183, 1317
BceAI ACGGC 1 cut(s) 1392
BcgI CGANNNNNNTGC 2 cut(s) 940, 974
BciT130I CCWGG 1 cut(s) 543
BciVI GTATCC 1 cut(s) 1233
BcoDI GTCTC 1 cut(s) 784
BfaI CTAG 6 cut(s) 35, 303, 588, 924, 935, 1464
BfmI CTRYAG 5 cut(s) 396, 654, 949, 1044, 1110
BfoI RGCGCY 1 cut(s) 1417
BfuAI ACCTGC 3 cut(s) 980, 1080, 1117
BfuI GTATCC 1 cut(s) 1233
BglI GCCNNNNNGGC 2 cut(s) 385, 960
BglII AGATCT 1 cut(s) 76
BmcAI AGTACT 1 cut(s) 777
Bme1390I CCNGG 1 cut(s) 543
Bme18I GGWCC 1 cut(s) 782
BmeT110I CYCGRG 1 cut(s) 785
BmgT120I GGNCC 2 cut(s) 782, 1290
BmiI GGNNCC 5 cut(s) 784, 831, 1203, 1328, 1415
BmrFI CCNGG 1 cut(s) 543
BmrI ACTGGG 1 cut(s) 376
BmsI GCATC 8 cut(s) 308, 328, 446, 640, 701, 921, 1195, 1450
BmtI GCTAGC 1 cut(s) 938
BmuI ACTGGG 1 cut(s) 376
BpiI GAAGAC 1 cut(s) 97
BplI GAGNNNNNCTC 2 cut(s) 621, 653
BpmI CTGGAG 3 cut(s) 65, 335, 1460
BsaBI GATNNNNATC 1 cut(s) 600
BsaHI GRCGYC 1 cut(s) 1414
BsaI GGTCTC 1 cut(s) 784
BsaJI CCNNGG 1 cut(s) 1293
BsaXI ACNNNNNCTCC 2 cut(s) 384, 414
Bsc4I CCNNNNNNNGG 5 cut(s) 150, 257, 839, 866, 1288
Bse1I ACTGG 4 cut(s) 82, 382, 1273, 1443
Bse8I GATNNNNATC 1 cut(s) 600
BseBI CCWGG 1 cut(s) 543
BseDI CCNNGG 1 cut(s) 1293
BseGI GGATG 5 cut(s) 211, 655, 912, 1303, 1465
BseJI GATNNNNATC 1 cut(s) 600
BseLI CCNNNNNNNGG 5 cut(s) 150, 257, 839, 866, 1288
BseMII CTCAG 2 cut(s) 42, 87
BseNI ACTGG 4 cut(s) 82, 382, 1273, 1443
BsePI GCGCGC 1 cut(s) 979
BseSI GKGCMC 1 cut(s) 1108
BsgI GTGCAG 3 cut(s) 903, 1131, 1239
Bsh1236I CGCG 7 cut(s) 879, 981, 989, 1016, 1065, 1196, 1198
BshFI GGCC 3 cut(s) 870, 963, 1292
BshNI GGYRCC 2 cut(s) 829, 1413
BsiHKAI GWGCWC 2 cut(s) 1108, 1308
BsiHKCI CYCGRG 1 cut(s) 785
BsiWI CGTACG 1 cut(s) 1373
BslFI GGGAC 2 cut(s) 768, 1036
BslI CCNNNNNNNGG 5 cut(s) 150, 257, 839, 866, 1288
BsmAI GTCTC 1 cut(s) 784
BsmFI GGGAC 2 cut(s) 768, 1036
BsmI GAATGC 2 cut(s) 722, 1139
BsnI GGCC 3 cut(s) 870, 963, 1292
Bso31I GGTCTC 1 cut(s) 784
BsoBI CYCGRG 1 cut(s) 785
Bsp1286I GDGCHC 2 cut(s) 1108, 1308
Bsp143I GATC 4 cut(s) 76, 124, 1201, 1326
BspANI GGCC 3 cut(s) 870, 963, 1292
BspCNI CTCAG 2 cut(s) 43, 86
BspFNI CGCG 7 cut(s) 879, 981, 989, 1016, 1065, 1196, 1198
BspHI TCATGA 1 cut(s) 574
BspLI GGNNCC 5 cut(s) 784, 831, 1203, 1328, 1415
BspMAI CTGCAG 3 cut(s) 953, 1048, 1114
BspMI ACCTGC 3 cut(s) 980, 1080, 1117
BspOI GCTAGC 1 cut(s) 938
BspPI GGATC 5 cut(s) 119, 1196, 1209, 1321, 1334
BspT107I GGYRCC 2 cut(s) 829, 1413
BspTNI GGTCTC 1 cut(s) 784
BsrI ACTGG 4 cut(s) 82, 382, 1273, 1443
BssECI CCNNGG 1 cut(s) 1293
BssHII GCGCGC 1 cut(s) 979
BssMI GATC 4 cut(s) 76, 124, 1201, 1326
BssNAI GTATAC 1 cut(s) 366
BssNI GRCGYC 1 cut(s) 1414
BssSI CACGAG 2 cut(s) 452, 638
Bst1107I GTATAC 1 cut(s) 366
Bst2BI CACGAG 2 cut(s) 452, 638
Bst2UI CCWGG 1 cut(s) 543
Bst4CI ACNGT 2 cut(s) 370, 663
Bst6I CTCTTC 1 cut(s) 267
BstACI GRCGYC 1 cut(s) 1414
BstAPI GCANNNNNTGC 2 cut(s) 650, 1145
BstDEI CTNAG 2 cut(s) 51, 73
BstDSI CCRYGG 1 cut(s) 1293
BstENI CCTNNNNNAGG 1 cut(s) 837
BstF5I GGATG 5 cut(s) 211, 655, 912, 1303, 1465
BstFNI CGCG 7 cut(s) 879, 981, 989, 1016, 1065, 1196, 1198
BstH2I RGCGCY 1 cut(s) 1417
BstKTI GATC 4 cut(s) 79, 127, 1204, 1329
BstMAI GTCTC 1 cut(s) 784
BstMBI GATC 4 cut(s) 76, 124, 1201, 1326
BstNI CCWGG 1 cut(s) 543
BstSCI CCNGG 1 cut(s) 541
BstSFI CTRYAG 5 cut(s) 396, 654, 949, 1044, 1110
BstSLI GKGCMC 1 cut(s) 1108
BstUI CGCG 7 cut(s) 879, 981, 989, 1016, 1065, 1196, 1198
BstV2I GAAGAC 1 cut(s) 97
BstX2I RGATCY 3 cut(s) 76, 1201, 1326
BstXI CCANNNNNNTGG 1 cut(s) 389
BstYI RGATCY 3 cut(s) 76, 1201, 1326
BstZ17I GTATAC 1 cut(s) 366
BsuI GTATCC 1 cut(s) 1233
BsuRI GGCC 3 cut(s) 870, 963, 1292
BtgI CCRYGG 1 cut(s) 1293
BtgZI GCGATG 1 cut(s) 1247
BtsCI GGATG 5 cut(s) 211, 655, 912, 1303, 1465
BtsI GCAGTG 2 cut(s) 895, 1123
BtsIMutI CAGTG 5 cut(s) 333, 389, 659, 895, 1123
BveI ACCTGC 3 cut(s) 980, 1080, 1117
CaiI CAGNNNCTG 1 cut(s) 632
CciI TCATGA 1 cut(s) 574
Cfr13I GGNCC 2 cut(s) 782, 1290
CseI GACGC 2 cut(s) 1013, 1038
Csp6I GTAC 4 cut(s) 282, 776, 1374, 1444
CspCI CAANNNNNGTGG 2 cut(s) 1282, 1317
CviAII CATG 6 cut(s) 514, 575, 825, 861, 1420, 1447
CviQI GTAC 4 cut(s) 282, 776, 1374, 1444
DdeI CTNAG 2 cut(s) 51, 73
DinI GGCGCC 1 cut(s) 1415
DpnI GATC 4 cut(s) 78, 126, 1203, 1328
DpnII GATC 4 cut(s) 76, 124, 1201, 1326
DrdI GACNNNNNNGTC 1 cut(s) 101
DseDI GACNNNNNNGTC 1 cut(s) 101
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
EciI GGCGGA 1 cut(s) 228
Eco31I GGTCTC 1 cut(s) 784
Eco47I GGWCC 1 cut(s) 782
Eco57I CTGAAG 4 cut(s) 366, 480, 603, 858
Eco88I CYCGRG 1 cut(s) 785
EcoNI CCTNNNNNAGG 1 cut(s) 837
EcoRII CCWGG 1 cut(s) 541
EcoT22I ATGCAT 1 cut(s) 694
EgeI GGCGCC 1 cut(s) 1415
EheI GGCGCC 1 cut(s) 1415
FaeI CATG 6 cut(s) 517, 578, 828, 864, 1423, 1450
FaqI GGGAC 2 cut(s) 768, 1036
FatI CATG 6 cut(s) 513, 574, 824, 860, 1419, 1446
FauI CCCGC 8 cut(s) 884, 947, 994, 1021, 1070, 1097, 1144, 1191
FblI GTMKAC 1 cut(s) 365
FokI GGATG 5 cut(s) 198, 662, 899, 1310, 1472
FspBI CTAG 6 cut(s) 35, 303, 588, 924, 935, 1464
FspI TGCGCA 2 cut(s) 892, 1076
GsuI CTGGAG 3 cut(s) 65, 335, 1460
HaeII RGCGCY 1 cut(s) 1417
HaeIII GGCC 3 cut(s) 870, 963, 1292
HgaI GACGC 2 cut(s) 1013, 1038
Hin1I GRCGYC 1 cut(s) 1414
Hin1II CATG 6 cut(s) 517, 578, 828, 864, 1423, 1450
HincII GTYRAC 1 cut(s) 511
HindII GTYRAC 1 cut(s) 511
HinfI GANTC 9 cut(s) 155, 317, 455, 518, 578, 596, 636, 812, 856
HphI GGTGA 2 cut(s) 146, 335
Hpy166II GTNNAC 6 cut(s) 366, 403, 472, 511, 1028, 1106
Hpy188I TCNGA 9 cut(s) 76, 88, 460, 583, 697, 715, 1162, 1276, 1436
Hpy188III TCNNGA 9 cut(s) 170, 202, 251, 428, 575, 785, 803, 836, 1405
Hpy8I GTNNAC 6 cut(s) 366, 403, 472, 511, 1028, 1106
HpyAV CCTTC 3 cut(s) 341, 804, 833
HpyCH4III ACNGT 2 cut(s) 370, 663
HpyCH4IV ACGT 1 cut(s) 728
HpyF3I CTNAG 2 cut(s) 51, 73
HpySE526I ACGT 1 cut(s) 728
Hsp92I GRCGYC 1 cut(s) 1414
Hsp92II CATG 6 cut(s) 517, 578, 828, 864, 1423, 1450
KasI GGCGCC 1 cut(s) 1413
Kzo9I GATC 4 cut(s) 76, 124, 1201, 1326
LmnI GCTCC 4 cut(s) 392, 629, 950, 1177
LweI GCATC 8 cut(s) 308, 328, 446, 640, 701, 921, 1195, 1450
MaeI CTAG 6 cut(s) 35, 303, 588, 924, 935, 1464
MaeII ACGT 1 cut(s) 728
MaeIII GTNAC 1 cut(s) 729
MalI GATC 4 cut(s) 78, 126, 1203, 1328
MboI GATC 4 cut(s) 76, 124, 1201, 1326
MboII GAAGA 7 cut(s) 19, 97, 127, 284, 421, 502, 609
MfeI CAATTG 1 cut(s) 56
MflI RGATCY 3 cut(s) 76, 1201, 1326
MhlI GDGCHC 2 cut(s) 1108, 1308
MluCI AATT 5 cut(s) 56, 850, 994, 1338, 1469
Mly113I GGCGCC 1 cut(s) 1414
MlyI GAGTC 3 cut(s) 326, 464, 630
MmeI TCCRAC 2 cut(s) 152, 1459
Mph1103I ATGCAT 1 cut(s) 694
MseI TTAA 2 cut(s) 219, 1337
MslI CAYNNNNRTG 1 cut(s) 1406
MspA1I CMGCKG 1 cut(s) 942
MspR9I CCNGG 1 cut(s) 543
MunI CAATTG 1 cut(s) 56
Mva1269I GAATGC 2 cut(s) 722, 1139
MvaI CCWGG 1 cut(s) 543
MvnI CGCG 7 cut(s) 879, 981, 989, 1016, 1065, 1196, 1198
NarI GGCGCC 1 cut(s) 1414
NdeII GATC 4 cut(s) 76, 124, 1201, 1326
NheI GCTAGC 1 cut(s) 934
NlaIII CATG 6 cut(s) 517, 578, 828, 864, 1423, 1450
NlaIV GGNNCC 5 cut(s) 784, 831, 1203, 1328, 1415
NmuCI GTSAC 1 cut(s) 729
NsbI TGCGCA 2 cut(s) 892, 1076
NsiI ATGCAT 1 cut(s) 694
PagI TCATGA 1 cut(s) 574
PaqCI CACCTGC 2 cut(s) 1080, 1117
PauI GCGCGC 1 cut(s) 979
PcsI WCGNNNNNNNCGW 1 cut(s) 1186
PctI GAATGC 2 cut(s) 722, 1139
PfeI GAWTC 6 cut(s) 155, 518, 578, 596, 812, 856
Pfl23II CGTACG 1 cut(s) 1373
PflMI CCANNNNNTGG 2 cut(s) 257, 866
PleI GAGTC 3 cut(s) 325, 463, 630
PluTI GGCGCC 1 cut(s) 1417
PpsI GAGTC 3 cut(s) 325, 463, 630
PsiI TTATAA 1 cut(s) 554
Psp6I CCWGG 1 cut(s) 541
PspGI CCWGG 1 cut(s) 541
PspLI CGTACG 1 cut(s) 1373
PspN4I GGNNCC 5 cut(s) 784, 831, 1203, 1328, 1415
PspPI GGNCC 2 cut(s) 782, 1290
PstI CTGCAG 3 cut(s) 953, 1048, 1114
PstNI CAGNNNCTG 1 cut(s) 632
PsuI RGATCY 3 cut(s) 76, 1201, 1326
PteI GCGCGC 1 cut(s) 979
RsaI GTAC 4 cut(s) 283, 777, 1375, 1445
RsaNI GTAC 4 cut(s) 282, 776, 1374, 1444
RseI CAYNNNNRTG 1 cut(s) 1406
SaqAI TTAA 2 cut(s) 219, 1337
Sau3AI GATC 4 cut(s) 76, 124, 1201, 1326
Sau96I GGNCC 2 cut(s) 782, 1290
ScaI AGTACT 1 cut(s) 777
SchI GAGTC 3 cut(s) 326, 464, 630
ScrFI CCNGG 1 cut(s) 543
SduI GDGCHC 2 cut(s) 1108, 1308
SfaNI GCATC 8 cut(s) 308, 328, 446, 640, 701, 921, 1195, 1450
SfcI CTRYAG 5 cut(s) 396, 654, 949, 1044, 1110
SfoI GGCGCC 1 cut(s) 1415
SinI GGWCC 1 cut(s) 782
SmiMI CAYNNNNRTG 1 cut(s) 1406
Sse9I AATT 5 cut(s) 56, 850, 994, 1338, 1469
SspDI GGCGCC 1 cut(s) 1413
SspMI CTAG 6 cut(s) 35, 303, 588, 924, 935, 1464
StyD4I CCNGG 1 cut(s) 541
TaaI ACNGT 2 cut(s) 370, 663
TaiI ACGT 1 cut(s) 731
TaqI TCGA 3 cut(s) 611, 1189, 1238
TasI AATT 5 cut(s) 56, 850, 994, 1338, 1469
TatI WGTACW 3 cut(s) 281, 775, 1443
TfiI GAWTC 6 cut(s) 155, 518, 578, 596, 812, 856
Tru1I TTAA 2 cut(s) 219, 1337
Tru9I TTAA 2 cut(s) 219, 1337
TscAI CASTG 5 cut(s) 340, 389, 666, 902, 1130
TseFI GTSAC 1 cut(s) 729
Tsp45I GTSAC 1 cut(s) 729
TspDTI ATGAA 4 cut(s) 519, 563, 591, 786
TspGWI ACGGA 2 cut(s) 80, 1310
TspRI CASTG 5 cut(s) 340, 389, 666, 902, 1130
Van91I CCANNNNNTGG 2 cut(s) 257, 866
VneI GTGCAC 1 cut(s) 1104
VpaK11BI GGWCC 1 cut(s) 782
XagI CCTNNNNNAGG 1 cut(s) 837
XmiI GTMKAC 1 cut(s) 365
XspI CTAG 6 cut(s) 35, 303, 588, 924, 935, 1464
ZrmI AGTACT 1 cut(s) 777
Zsp2I ATGCAT 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.