Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000144.1

Orthogroup ID

OG0003377

Physical Location & Seq

Genomic Coordinates Reverse (-)

76176 .. 77834

Gene Structure 1659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000144.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

atggcagaagccaaaaagaggtatgcagttgtcacaggggctaataaaggagttgggttcggagtagtaagacaattggcttcaaatgggatcatgacagtgttaacagctagagatgaaaagaggggtcttgaagctgttgaaaaattgaaagagtccggcctctctgagcttgtggtatttcatcagcttgatgtgacaaacccagatagcattgcttcccttgcacattttgtcaaaacccaatttgggaaactagatatcttgcatcgctgcagcctgccccgcgtgcgcccctgcgcacactgctgccaccgaagcatccctgcacctagccccttgctagcccgctgctcctgcagccctttcggcctgcatacctgccagcgcgcccccgcgctcaattcgctgccttgcagccccgcgcccgtgcgtccaccccacgctgcccctgcagcgtccctgctgccccgcgcacacctgcgcacgctgctgccccgcctacgcacccgtgcacctgcagccctacaccactgctgctgccccgcattcgctgcacgcttctactcggattgcttcgctccatcacgcctgcatcgacacgcgcgtgatccaaaaccaacaagtaagtatccaaaagagatgtcgaaacttgactttcctgcacttacctcaactggctcggaatatcatagttgggccacggatgttgagcaccatctcacttcaaaagggatcctacccttaattcaagctcctaatcctactctcatatttgagcgtacggctacgaacaatgccaccgccctcatcttgatgaggcgccacatggataaatcactccgactggagtacatggcaatcaaggatgctagagaattatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

294

Amino Acids

32.39

Weight (kDa)

9.71

Isoelectric Point (pI)

44.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38840
fragaria_vesca	FvH4_6g46110 FvH4_6g46110 FvH4_6g46110 FvH4_6g46110
malus_domestica	MD09G1076900.v1.1
prunus_persica	Prupe.3G247200_v2.0.a1
pyrus_communis	pycom09g00410
rosa_chinensis	RchiOBHm_Chr2g0164301 RchiOBHm_Chr2g0164311 RchiOBHm_Chr2g0164441 RchiOBHm_Chr2g0164481
rosa_laevigata	RLG00000021452 RLG00000021462
rosa_multiflora	Rmu_sc0000144.1_g000022 Rmu_sc0002082.1_g000003 Rmu_sc0007154.1_g000011 Rmu_sc0020353.1_g000001 Rmu_sc0024157.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086560 Rroxscaffold_2G00086640
rosa_rugosa	Rorug02G0508000 Rorug02G0508500 Rorug02G0508700
rosa_samantha	Rh2AG575900 Rh2AG576000 Rh2AG576700 Rh2BG587700 Rh2CG557600 Rh2CG557700 Rh2CG557800 Rh2CG558500 Rh2DG596400 Rh2DG598200
rosa_wichuraiana	Rw2G047780 Rw2G047870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	489, 526
Acc16I	TGCGCA	2 cut(s)	301, 485
Acc36I	ACCTGC	3 cut(s)	389, 489, 526
AccB1I	GGYRCC	1 cut(s)	822
AccII	CGCG	7 cut(s)	288, 390, 398, 425, 474, 605, 607
AciI	CCGC	8 cut(s)	286, 349, 396, 423, 472, 499, 546, 804
AclWI	GGATC	4 cut(s)	98, 605, 730, 743
AcyI	GRCGYC	1 cut(s)	823
AfaI	GTAC	2 cut(s)	784, 854
AfiI	CCNNNNNNNGG	2 cut(s)	18, 249
AgsI	TTSAA	6 cut(s)	84, 134, 143, 151, 729, 752
AleI	CACNNNNGTG	1 cut(s)	606
AluBI	AGCT	5 cut(s)	110, 137, 172, 190, 755
AluI	AGCT	5 cut(s)	110, 137, 172, 190, 755
Alw21I	GWGCWC	2 cut(s)	517, 717
Alw44I	GTGCAC	1 cut(s)	513
AlwI	GGATC	4 cut(s)	98, 605, 730, 743
AoxI	GGCC	3 cut(s)	160, 370, 699
ApaLI	GTGCAC	1 cut(s)	513
ArsI	GACNNNNNNTTYG	2 cut(s)	629, 661
AspS9I	GGNCC	1 cut(s)	699
AsuNHI	GCTAGC	1 cut(s)	343
BaeGI	GKGCMC	1 cut(s)	517
BamHI	GGATCC	1 cut(s)	735
BanI	GGYRCC	1 cut(s)	822
Bbv12I	GWGCWC	2 cut(s)	517, 717
BccI	CCATC	2 cut(s)	592, 726
BceAI	ACGGC	1 cut(s)	801
BcgI	CGANNNNNNTGC	2 cut(s)	349, 383
BciVI	GTATCC	1 cut(s)	642
BfaI	CTAG	5 cut(s)	111, 257, 333, 344, 873
BfmI	CTRYAG	4 cut(s)	274, 358, 453, 519
BfoI	RGCGCY	1 cut(s)	826
BfuAI	ACCTGC	3 cut(s)	389, 489, 526
BfuI	GTATCC	1 cut(s)	642
BglI	GCCNNNNNGGC	1 cut(s)	369
BmgT120I	GGNCC	1 cut(s)	699
BmiI	GGNNCC	2 cut(s)	737, 824
BmsI	GCATC	4 cut(s)	277, 330, 604, 859
BmtI	GCTAGC	1 cut(s)	347
BpmI	CTGGAG	1 cut(s)	869
BsaHI	GRCGYC	1 cut(s)	823
BsaJI	CCNNGG	1 cut(s)	702
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 249
Bse1I	ACTGG	2 cut(s)	682, 852
Bse3DI	GCAATG	1 cut(s)	213
BseDI	CCNNGG	1 cut(s)	702
BseGI	GGATG	3 cut(s)	321, 712, 874
BseLI	CCNNNNNNNGG	2 cut(s)	18, 249
BseMI	GCAATG	1 cut(s)	213
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	2 cut(s)	682, 852
BsePI	GCGCGC	1 cut(s)	388
BseSI	GKGCMC	1 cut(s)	517
BsgI	GTGCAG	3 cut(s)	312, 540, 648
Bsh1236I	CGCG	7 cut(s)	288, 390, 398, 425, 474, 605, 607
BshFI	GGCC	3 cut(s)	162, 372, 701
BshNI	GGYRCC	1 cut(s)	822
BsiHKAI	GWGCWC	2 cut(s)	517, 717
BsiSI	CCGG	1 cut(s)	159
BsiWI	CGTACG	1 cut(s)	782
BslFI	GGGAC	1 cut(s)	445
BslI	CCNNNNNNNGG	2 cut(s)	18, 249
BsmFI	GGGAC	1 cut(s)	445
BsmI	GAATGC	1 cut(s)	548
BsnI	GGCC	3 cut(s)	162, 372, 701
Bsp1286I	GDGCHC	2 cut(s)	517, 717
Bsp143I	GATC	3 cut(s)	90, 610, 735
BspACI	CCGC	8 cut(s)	286, 349, 396, 423, 472, 499, 546, 804
BspANI	GGCC	3 cut(s)	162, 372, 701
BspCNI	CTCAG	1 cut(s)	160
BspFNI	CGCG	7 cut(s)	288, 390, 398, 425, 474, 605, 607
BspHI	TCATGA	1 cut(s)	93
BspLI	GGNNCC	2 cut(s)	737, 824
BspMAI	CTGCAG	4 cut(s)	278, 362, 457, 523
BspMI	ACCTGC	3 cut(s)	389, 489, 526
BspOI	GCTAGC	1 cut(s)	347
BspPI	GGATC	4 cut(s)	98, 605, 730, 743
BspT107I	GGYRCC	1 cut(s)	822
BsrDI	GCAATG	1 cut(s)	213
BsrI	ACTGG	2 cut(s)	682, 852
BssECI	CCNNGG	1 cut(s)	702
BssHII	GCGCGC	1 cut(s)	388
BssMI	GATC	3 cut(s)	90, 610, 735
BssNI	GRCGYC	1 cut(s)	823
Bst4CI	ACNGT	1 cut(s)	100
BstACI	GRCGYC	1 cut(s)	823
BstAPI	GCANNNNNTGC	1 cut(s)	554
BstDEI	CTNAG	1 cut(s)	168
BstDSI	CCRYGG	1 cut(s)	702
BstF5I	GGATG	3 cut(s)	321, 712, 874
BstFNI	CGCG	7 cut(s)	288, 390, 398, 425, 474, 605, 607
BstH2I	RGCGCY	1 cut(s)	826
BstKTI	GATC	3 cut(s)	93, 613, 738
BstMBI	GATC	3 cut(s)	90, 610, 735
BstSFI	CTRYAG	4 cut(s)	274, 358, 453, 519
BstSLI	GKGCMC	1 cut(s)	517
BstUI	CGCG	7 cut(s)	288, 390, 398, 425, 474, 605, 607
BstX2I	RGATCY	1 cut(s)	735
BstYI	RGATCY	1 cut(s)	735
BsuI	GTATCC	1 cut(s)	642
BsuRI	GGCC	3 cut(s)	162, 372, 701
BtgI	CCRYGG	1 cut(s)	702
BtgZI	GCGATG	1 cut(s)	254
BtsCI	GGATG	3 cut(s)	321, 712, 874
BtsI	GCAGTG	2 cut(s)	304, 532
BtsIMutI	CAGTG	3 cut(s)	105, 304, 532
BveI	ACCTGC	3 cut(s)	389, 489, 526
CciI	TCATGA	1 cut(s)	93
Cfr13I	GGNCC	1 cut(s)	699
CseI	GACGC	2 cut(s)	422, 447
Csp6I	GTAC	2 cut(s)	783, 853
CspCI	CAANNNNNGTGG	2 cut(s)	691, 726
CviAII	CATG	3 cut(s)	94, 829, 856
CviQI	GTAC	2 cut(s)	783, 853
DdeI	CTNAG	1 cut(s)	168
DinI	GGCGCC	1 cut(s)	824
DpnI	GATC	3 cut(s)	92, 612, 737
DpnII	GATC	3 cut(s)	90, 610, 735
Eco32I	GATATC	1 cut(s)	262
EcoRV	GATATC	1 cut(s)	262
EgeI	GGCGCC	1 cut(s)	824
EheI	GGCGCC	1 cut(s)	824
FaeI	CATG	3 cut(s)	97, 832, 859
FaiI	YATR	8 cut(s)	24, 95, 378, 693, 773, 830, 857, 883
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	3 cut(s)	93, 828, 855
FauI	CCCGC	7 cut(s)	293, 356, 403, 430, 479, 506, 553
FokI	GGATG	3 cut(s)	308, 719, 881
FspBI	CTAG	5 cut(s)	111, 257, 333, 344, 873
FspI	TGCGCA	2 cut(s)	301, 485
GsuI	CTGGAG	1 cut(s)	869
HaeII	RGCGCY	1 cut(s)	826
HaeIII	GGCC	3 cut(s)	162, 372, 701
HapII	CCGG	1 cut(s)	159
HgaI	GACGC	2 cut(s)	422, 447
Hin1I	GRCGYC	1 cut(s)	823
Hin1II	CATG	3 cut(s)	97, 832, 859
HincII	GTYRAC	1 cut(s)	105
HindII	GTYRAC	1 cut(s)	105
HinfI	GANTC	1 cut(s)	155
HpaI	GTTAAC	1 cut(s)	105
HpaII	CCGG	1 cut(s)	159
Hpy166II	GTNNAC	3 cut(s)	105, 437, 515
Hpy188I	TCNGA	5 cut(s)	62, 169, 571, 685, 845
Hpy188III	TCNNGA	3 cut(s)	94, 131, 814
Hpy8I	GTNNAC	3 cut(s)	105, 437, 515
HpyCH4III	ACNGT	1 cut(s)	100
HpyF3I	CTNAG	1 cut(s)	168
Hsp92I	GRCGYC	1 cut(s)	823
Hsp92II	CATG	3 cut(s)	97, 832, 859
KasI	GGCGCC	1 cut(s)	822
KspAI	GTTAAC	1 cut(s)	105
Kzo9I	GATC	3 cut(s)	90, 610, 735
LmnI	GCTCC	3 cut(s)	359, 586, 760
LweI	GCATC	4 cut(s)	277, 330, 604, 859
MaeI	CTAG	5 cut(s)	111, 257, 333, 344, 873
MaeIII	GTNAC	2 cut(s)	31, 196
MalI	GATC	3 cut(s)	92, 612, 737
MboI	GATC	3 cut(s)	90, 610, 735
MfeI	CAATTG	1 cut(s)	74
MflI	RGATCY	1 cut(s)	735
MhlI	GDGCHC	2 cut(s)	517, 717
MluCI	AATT	6 cut(s)	74, 146, 245, 403, 747, 878
Mly113I	GGCGCC	1 cut(s)	823
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	1 cut(s)	868
MnlI	CCTC	6 cut(s)	12, 117, 173, 682, 813, 818
MseI	TTAA	2 cut(s)	104, 746
MslI	CAYNNNNRTG	3 cut(s)	98, 606, 815
MspA1I	CMGCKG	1 cut(s)	351
MspI	CCGG	1 cut(s)	159
MunI	CAATTG	1 cut(s)	74
Mva1269I	GAATGC	1 cut(s)	548
MvnI	CGCG	7 cut(s)	288, 390, 398, 425, 474, 605, 607
NarI	GGCGCC	1 cut(s)	823
NdeII	GATC	3 cut(s)	90, 610, 735
NheI	GCTAGC	1 cut(s)	343
NlaIII	CATG	3 cut(s)	97, 832, 859
NlaIV	GGNNCC	2 cut(s)	737, 824
NmuCI	GTSAC	2 cut(s)	31, 196
NsbI	TGCGCA	2 cut(s)	301, 485
OliI	CACNNNNGTG	1 cut(s)	606
PagI	TCATGA	1 cut(s)	93
PaqCI	CACCTGC	2 cut(s)	489, 526
PauI	GCGCGC	1 cut(s)	388
PcsI	WCGNNNNNNNCGW	2 cut(s)	595, 604
PctI	GAATGC	1 cut(s)	548
Pfl23II	CGTACG	1 cut(s)	782
PleI	GAGTC	1 cut(s)	163
PluTI	GGCGCC	1 cut(s)	826
PpsI	GAGTC	1 cut(s)	163
PspLI	CGTACG	1 cut(s)	782
PspN4I	GGNNCC	2 cut(s)	737, 824
PspPI	GGNCC	1 cut(s)	699
PstI	CTGCAG	4 cut(s)	278, 362, 457, 523
PsuI	RGATCY	1 cut(s)	735
PteI	GCGCGC	1 cut(s)	388
RsaI	GTAC	2 cut(s)	784, 854
RsaNI	GTAC	2 cut(s)	783, 853
RseI	CAYNNNNRTG	3 cut(s)	98, 606, 815
SaqAI	TTAA	2 cut(s)	104, 746
Sau3AI	GATC	3 cut(s)	90, 610, 735
Sau96I	GGNCC	1 cut(s)	699
SchI	GAGTC	1 cut(s)	164
SduI	GDGCHC	2 cut(s)	517, 717
SfaNI	GCATC	4 cut(s)	277, 330, 604, 859
SfcI	CTRYAG	4 cut(s)	274, 358, 453, 519
SfoI	GGCGCC	1 cut(s)	824
SmiMI	CAYNNNNRTG	3 cut(s)	98, 606, 815
Sse9I	AATT	6 cut(s)	74, 146, 245, 403, 747, 878
SsiI	CCGC	8 cut(s)	286, 349, 396, 423, 472, 499, 546, 804
SspDI	GGCGCC	1 cut(s)	822
SspMI	CTAG	5 cut(s)	111, 257, 333, 344, 873
TaaI	ACNGT	1 cut(s)	100
TaqI	TCGA	2 cut(s)	598, 647
TasI	AATT	6 cut(s)	74, 146, 245, 403, 747, 878
TatI	WGTACW	1 cut(s)	852
Tru1I	TTAA	2 cut(s)	104, 746
Tru9I	TTAA	2 cut(s)	104, 746
TscAI	CASTG	3 cut(s)	105, 311, 539
TseFI	GTSAC	2 cut(s)	31, 196
Tsp45I	GTSAC	2 cut(s)	31, 196
TspDTI	ATGAA	2 cut(s)	132, 173
TspGWI	ACGGA	1 cut(s)	719
TspRI	CASTG	3 cut(s)	105, 311, 539
VneI	GTGCAC	1 cut(s)	513
XspI	CTAG	5 cut(s)	111, 257, 333, 344, 873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.