Inner membrane component of T3SS, cytoplasmic domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G38840 |
| fragaria_vesca | FvH4_6g46110 FvH4_6g46110 FvH4_6g46110 FvH4_6g46110 |
| malus_domestica | MD09G1076900.v1.1 |
| prunus_persica | Prupe.3G247200_v2.0.a1 |
| pyrus_communis | pycom09g00410 |
| rosa_chinensis | RchiOBHm_Chr2g0164301 RchiOBHm_Chr2g0164311 RchiOBHm_Chr2g0164441 RchiOBHm_Chr2g0164481 |
| rosa_laevigata | RLG00000021452 RLG00000021462 |
| rosa_multiflora | Rmu_sc0000144.1_g000022 Rmu_sc0002082.1_g000003 Rmu_sc0007154.1_g000011 Rmu_sc0020353.1_g000001 Rmu_sc0024157.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00086560 Rroxscaffold_2G00086640 |
| rosa_rugosa | Rorug02G0508000 Rorug02G0508500 Rorug02G0508700 |
| rosa_samantha | Rh2AG575900 Rh2AG576000 Rh2AG576700 Rh2BG587700 Rh2CG557600 Rh2CG557700 Rh2CG557800 Rh2CG558500 Rh2DG596400 Rh2DG598200 |
| rosa_wichuraiana | Rw2G047780 Rw2G047870 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 365 |
| AccBSI | CCGCTC | 1 cut(s) | 326 |
| AccI | GTMKAC | 2 cut(s) | 375, 423 |
| AccII | CGCG | 3 cut(s) | 254, 995, 997 |
| AciI | CCGC | 8 cut(s) | 11, 20, 33, 42, 221, 252, 257, 324 |
| AcoI | YGGCCR | 1 cut(s) | 415 |
| AcsI | RAATTY | 1 cut(s) | 1028 |
| AcuI | CTGAAG | 1 cut(s) | 464 |
| AcyI | GRCGYC | 1 cut(s) | 366 |
| AfaI | GTAC | 5 cut(s) | 506, 526, 535, 689, 1058 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 116, 117, 349 |
| AflIII | ACRYGT | 1 cut(s) | 408 |
| AgsI | TTSAA | 5 cut(s) | 96, 487, 673, 731, 746 |
| AjnI | CCWGG | 1 cut(s) | 552 |
| AluBI | AGCT | 4 cut(s) | 321, 346, 749, 853 |
| AluI | AGCT | 4 cut(s) | 321, 346, 749, 853 |
| Alw21I | GWGCWC | 2 cut(s) | 323, 450 |
| Alw26I | GTCTC | 2 cut(s) | 71, 257 |
| Ama87I | CYCGRG | 1 cut(s) | 347 |
| AoxI | GGCC | 2 cut(s) | 119, 415 |
| ApoI | RAATTY | 1 cut(s) | 1028 |
| AspLEI | GCGC | 3 cut(s) | 256, 368, 997 |
| AspS9I | GGNCC | 4 cut(s) | 5, 119, 352, 638 |
| AsuC2I | CCSGG | 1 cut(s) | 419 |
| AsuHPI | GGTGA | 2 cut(s) | 602, 830 |
| AvaI | CYCGRG | 1 cut(s) | 347 |
| AvaII | GGWCC | 3 cut(s) | 5, 352, 638 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 525, 558 |
| BanI | GGYRCC | 1 cut(s) | 365 |
| BanII | GRGCYC | 1 cut(s) | 323 |
| Bbv12I | GWGCWC | 2 cut(s) | 323, 450 |
| BccI | CCATC | 4 cut(s) | 67, 109, 755, 809 |
| BceAI | ACGGC | 2 cut(s) | 278, 379 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 599, 633 |
| BciT130I | CCWGG | 1 cut(s) | 554 |
| BcnI | CCSGG | 1 cut(s) | 419 |
| BcoDI | GTCTC | 2 cut(s) | 71, 257 |
| BfaI | CTAG | 3 cut(s) | 59, 141, 177 |
| BfoI | RGCGCY | 1 cut(s) | 369 |
| BisI | GCNGC | 1 cut(s) | 257 |
| BlsI | GCNGC | 1 cut(s) | 258 |
| BmcAI | AGTACT | 1 cut(s) | 526 |
| Bme1390I | CCNGG | 2 cut(s) | 419, 554 |
| Bme18I | GGWCC | 3 cut(s) | 5, 352, 638 |
| BmeT110I | CYCGRG | 1 cut(s) | 347 |
| BmgT120I | GGNCC | 4 cut(s) | 5, 119, 352, 638 |
| BmiI | GGNNCC | 4 cut(s) | 6, 18, 120, 367 |
| BmrFI | CCNGG | 2 cut(s) | 419, 554 |
| BmsI | GCATC | 7 cut(s) | 490, 642, 684, 731, 774, 778, 922 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 68, 100, 310, 342 |
| BpmI | CTGGAG | 1 cut(s) | 464 |
| BpuEI | CTTGAG | 3 cut(s) | 341, 942, 957 |
| BpuMI | CCSGG | 1 cut(s) | 419 |
| BsaHI | GRCGYC | 1 cut(s) | 366 |
| BsaI | GGTCTC | 2 cut(s) | 71, 257 |
| BsaJI | CCNNGG | 4 cut(s) | 283, 517, 634, 807 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 116, 117, 349 |
| Bse118I | RCCGGY | 1 cut(s) | 13 |
| Bse1I | ACTGG | 2 cut(s) | 337, 1064 |
| BseBI | CCWGG | 1 cut(s) | 554 |
| BseDI | CCNNGG | 4 cut(s) | 283, 517, 634, 807 |
| BseGI | GGATG | 3 cut(s) | 230, 793, 817 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 116, 117, 349 |
| BseMII | CTCAG | 2 cut(s) | 636, 1001 |
| BseNI | ACTGG | 2 cut(s) | 337, 1064 |
| BseRI | GAGGAG | 9 cut(s) | 141, 144, 147, 150, 153, 177, 180, 183, 186 |
| BseX3I | CGGCCG | 1 cut(s) | 415 |
| Bsh1236I | CGCG | 3 cut(s) | 254, 995, 997 |
| Bsh1285I | CGRYCG | 1 cut(s) | 418 |
| BshFI | GGCC | 2 cut(s) | 121, 417 |
| BshNI | GGYRCC | 1 cut(s) | 365 |
| BsiEI | CGRYCG | 1 cut(s) | 418 |
| BsiHKAI | GWGCWC | 2 cut(s) | 323, 450 |
| BsiHKCI | CYCGRG | 1 cut(s) | 347 |
| BsiSI | CCGG | 3 cut(s) | 14, 260, 418 |
| BslFI | GGGAC | 1 cut(s) | 281 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 116, 117, 349 |
| BsmAI | GTCTC | 2 cut(s) | 71, 257 |
| BsmFI | GGGAC | 1 cut(s) | 281 |
| BsmI | GAATGC | 1 cut(s) | 610 |
| BsnI | GGCC | 2 cut(s) | 121, 417 |
| Bso31I | GGTCTC | 2 cut(s) | 71, 257 |
| BsoBI | CYCGRG | 1 cut(s) | 347 |
| Bsp1286I | GDGCHC | 2 cut(s) | 323, 450 |
| Bsp143I | GATC | 2 cut(s) | 712, 990 |
| BspACI | CCGC | 8 cut(s) | 11, 20, 33, 42, 221, 252, 257, 324 |
| BspANI | GGCC | 2 cut(s) | 121, 417 |
| BspCNI | CTCAG | 2 cut(s) | 637, 1000 |
| BspFNI | CGCG | 3 cut(s) | 254, 995, 997 |
| BspLI | GGNNCC | 4 cut(s) | 6, 18, 120, 367 |
| BspT107I | GGYRCC | 1 cut(s) | 365 |
| BspTNI | GGTCTC | 2 cut(s) | 71, 257 |
| BsrBI | CCGCTC | 1 cut(s) | 326 |
| BsrFI | RCCGGY | 1 cut(s) | 13 |
| BsrI | ACTGG | 2 cut(s) | 337, 1064 |
| BssAI | RCCGGY | 1 cut(s) | 13 |
| BssECI | CCNNGG | 4 cut(s) | 283, 517, 634, 807 |
| BssMI | GATC | 2 cut(s) | 712, 990 |
| BssNI | GRCGYC | 1 cut(s) | 366 |
| BssT1I | CCWWGG | 3 cut(s) | 283, 517, 634 |
| Bst2UI | CCWGG | 1 cut(s) | 554 |
| Bst4CI | ACNGT | 1 cut(s) | 642 |
| BstACI | GRCGYC | 1 cut(s) | 366 |
| BstC8I | GCNNGC | 2 cut(s) | 15, 720 |
| BstDEI | CTNAG | 2 cut(s) | 645, 987 |
| BstF5I | GGATG | 3 cut(s) | 230, 793, 817 |
| BstFNI | CGCG | 3 cut(s) | 254, 995, 997 |
| BstH2I | RGCGCY | 1 cut(s) | 369 |
| BstHHI | GCGC | 3 cut(s) | 256, 368, 997 |
| BstKTI | GATC | 2 cut(s) | 715, 993 |
| BstMAI | GTCTC | 2 cut(s) | 71, 257 |
| BstMBI | GATC | 2 cut(s) | 712, 990 |
| BstMCI | CGRYCG | 1 cut(s) | 418 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 19, 41, 755, 941 |
| BstNI | CCWGG | 1 cut(s) | 554 |
| BstNSI | RCATGY | 2 cut(s) | 412, 587 |
| BstSCI | CCNGG | 2 cut(s) | 417, 552 |
| BstUI | CGCG | 3 cut(s) | 254, 995, 997 |
| BstZI | CGGCCG | 1 cut(s) | 415 |
| BsuRI | GGCC | 2 cut(s) | 121, 417 |
| BtsCI | GGATG | 3 cut(s) | 230, 793, 817 |
| BtsI | GCAGTG | 1 cut(s) | 480 |
| BtsIMutI | CAGTG | 1 cut(s) | 480 |
| Cac8I | GCNNGC | 2 cut(s) | 15, 720 |
| CfoI | GCGC | 3 cut(s) | 256, 368, 997 |
| Cfr10I | RCCGGY | 1 cut(s) | 13 |
| Cfr13I | GGNCC | 4 cut(s) | 5, 119, 352, 638 |
| CsiI | ACCWGGT | 1 cut(s) | 552 |
| Csp6I | GTAC | 5 cut(s) | 505, 525, 534, 688, 1057 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 475, 510 |
| CviAII | CATG | 5 cut(s) | 330, 409, 470, 530, 584 |
| CviQI | GTAC | 5 cut(s) | 505, 525, 534, 688, 1057 |
| DdeI | CTNAG | 2 cut(s) | 645, 987 |
| DinI | GGCGCC | 1 cut(s) | 367 |
| DpnI | GATC | 2 cut(s) | 714, 992 |
| DpnII | GATC | 2 cut(s) | 712, 990 |
| EaeI | YGGCCR | 1 cut(s) | 415 |
| EagI | CGGCCG | 1 cut(s) | 415 |
| EciI | GGCGGA | 2 cut(s) | 9, 210 |
| Ecl136II | GAGCTC | 1 cut(s) | 321 |
| EclXI | CGGCCG | 1 cut(s) | 415 |
| Eco130I | CCWWGG | 3 cut(s) | 283, 517, 634 |
| Eco24I | GRGCYC | 1 cut(s) | 323 |
| Eco31I | GGTCTC | 2 cut(s) | 71, 257 |
| Eco47I | GGWCC | 3 cut(s) | 5, 352, 638 |
| Eco52I | CGGCCG | 1 cut(s) | 415 |
| Eco53kI | GAGCTC | 1 cut(s) | 321 |
| Eco57I | CTGAAG | 1 cut(s) | 464 |
| Eco88I | CYCGRG | 1 cut(s) | 347 |
| EcoICRI | GAGCTC | 1 cut(s) | 321 |
| EcoO109I | RGGNCCY | 3 cut(s) | 5, 119, 352 |
| EcoRII | CCWGG | 1 cut(s) | 552 |
| EcoT14I | CCWWGG | 3 cut(s) | 283, 517, 634 |
| EcoT38I | GRGCYC | 1 cut(s) | 323 |
| EgeI | GGCGCC | 1 cut(s) | 367 |
| EheI | GGCGCC | 1 cut(s) | 367 |
| ErhI | CCWWGG | 3 cut(s) | 283, 517, 634 |
| FaeI | CATG | 5 cut(s) | 333, 412, 473, 533, 587 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 738, 770, 837, 869 |
| FaqI | GGGAC | 1 cut(s) | 281 |
| FatI | CATG | 5 cut(s) | 329, 408, 469, 529, 583 |
| FauI | CCCGC | 1 cut(s) | 49 |
| FauNDI | CATATG | 1 cut(s) | 915 |
| FblI | GTMKAC | 2 cut(s) | 375, 423 |
| Fnu4HI | GCNGC | 1 cut(s) | 257 |
| FokI | GGATG | 3 cut(s) | 217, 800, 824 |
| FriOI | GRGCYC | 1 cut(s) | 323 |
| Fsp4HI | GCNGC | 1 cut(s) | 257 |
| FspBI | CTAG | 3 cut(s) | 59, 141, 177 |
| GlaI | GCGC | 3 cut(s) | 255, 367, 996 |
| GluI | GCNGC | 1 cut(s) | 257 |
| GsuI | CTGGAG | 1 cut(s) | 464 |
| HaeII | RGCGCY | 1 cut(s) | 369 |
| HaeIII | GGCC | 2 cut(s) | 121, 417 |
| HapII | CCGG | 3 cut(s) | 14, 260, 418 |
| HhaI | GCGC | 3 cut(s) | 256, 368, 997 |
| Hin1I | GRCGYC | 1 cut(s) | 366 |
| Hin1II | CATG | 5 cut(s) | 333, 412, 473, 533, 587 |
| Hin6I | GCGC | 3 cut(s) | 254, 366, 995 |
| HinP1I | GCGC | 3 cut(s) | 254, 366, 995 |
| HincII | GTYRAC | 3 cut(s) | 376, 424, 544 |
| HindII | GTYRAC | 3 cut(s) | 376, 424, 544 |
| HindIII | AAGCTT | 1 cut(s) | 747 |
| HinfI | GANTC | 4 cut(s) | 47, 242, 307, 970 |
| HpaI | GTTAAC | 1 cut(s) | 544 |
| HpaII | CCGG | 3 cut(s) | 14, 260, 418 |
| HphI | GGTGA | 2 cut(s) | 602, 830 |
| Hpy166II | GTNNAC | 6 cut(s) | 146, 182, 376, 424, 544, 577 |
| Hpy188I | TCNGA | 4 cut(s) | 52, 247, 646, 990 |
| Hpy188III | TCNNGA | 4 cut(s) | 311, 443, 462, 487 |
| Hpy8I | GTNNAC | 6 cut(s) | 146, 182, 376, 424, 544, 577 |
| HpyCH4III | ACNGT | 1 cut(s) | 642 |
| HpyCH4V | TGCA | 2 cut(s) | 473, 583 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 19, 41, 755, 941 |
| HpyF3I | CTNAG | 2 cut(s) | 645, 987 |
| Hsp92I | GRCGYC | 1 cut(s) | 366 |
| Hsp92II | CATG | 5 cut(s) | 333, 412, 473, 533, 587 |
| HspAI | GCGC | 3 cut(s) | 254, 366, 995 |
| KasI | GGCGCC | 1 cut(s) | 365 |
| KroI | GCCGGC | 1 cut(s) | 13 |
| KroNI | GCCGGC | 1 cut(s) | 15 |
| KspAI | GTTAAC | 1 cut(s) | 544 |
| Kzo9I | GATC | 2 cut(s) | 712, 990 |
| LmnI | GCTCC | 5 cut(s) | 22, 318, 326, 331, 445 |
| LweI | GCATC | 7 cut(s) | 490, 642, 684, 731, 774, 778, 922 |
| MabI | ACCWGGT | 1 cut(s) | 552 |
| MaeI | CTAG | 3 cut(s) | 59, 141, 177 |
| MaeIII | GTNAC | 1 cut(s) | 826 |
| MalI | GATC | 2 cut(s) | 714, 992 |
| MbiI | CCGCTC | 1 cut(s) | 326 |
| MboI | GATC | 2 cut(s) | 712, 990 |
| MboII | GAAGA | 4 cut(s) | 84, 713, 812, 931 |
| MhlI | GDGCHC | 2 cut(s) | 323, 450 |
| MluCI | AATT | 2 cut(s) | 380, 1028 |
| Mly113I | GGCGCC | 1 cut(s) | 366 |
| MlyI | GAGTC | 3 cut(s) | 41, 236, 964 |
| MroNI | GCCGGC | 1 cut(s) | 13 |
| MseI | TTAA | 3 cut(s) | 384, 543, 680 |
| MslI | CAYNNNNRTG | 1 cut(s) | 588 |
| MspI | CCGG | 3 cut(s) | 14, 260, 418 |
| MspR9I | CCNGG | 2 cut(s) | 419, 554 |
| Mva1269I | GAATGC | 1 cut(s) | 610 |
| MvaI | CCWGG | 1 cut(s) | 554 |
| MvnI | CGCG | 3 cut(s) | 254, 995, 997 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 19, 41, 755, 941 |
| NaeI | GCCGGC | 1 cut(s) | 15 |
| NarI | GGCGCC | 1 cut(s) | 366 |
| NciI | CCSGG | 1 cut(s) | 419 |
| NdeI | CATATG | 1 cut(s) | 915 |
| NdeII | GATC | 2 cut(s) | 712, 990 |
| NgoMIV | GCCGGC | 1 cut(s) | 13 |
| NlaIII | CATG | 5 cut(s) | 333, 412, 473, 533, 587 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 18, 120, 367 |
| NmeAIII | GCCGAG | 1 cut(s) | 832 |
| NspI | RCATGY | 2 cut(s) | 412, 587 |
| PaeR7I | CTCGAG | 1 cut(s) | 347 |
| PciI | ACATGT | 1 cut(s) | 408 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 420, 429 |
| PctI | GAATGC | 1 cut(s) | 610 |
| PdiI | GCCGGC | 1 cut(s) | 15 |
| PfeI | GAWTC | 1 cut(s) | 307 |
| PkrI | GCNGC | 1 cut(s) | 258 |
| PleI | GAGTC | 3 cut(s) | 41, 236, 964 |
| PluTI | GGCGCC | 1 cut(s) | 369 |
| PpsI | GAGTC | 3 cut(s) | 41, 236, 964 |
| PpuMI | RGGWCCY | 2 cut(s) | 5, 352 |
| PscI | ACATGT | 1 cut(s) | 408 |
| Psp124BI | GAGCTC | 1 cut(s) | 323 |
| Psp5II | RGGWCCY | 2 cut(s) | 5, 352 |
| Psp6I | CCWGG | 1 cut(s) | 552 |
| PspGI | CCWGG | 1 cut(s) | 552 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 18, 120, 367 |
| PspPI | GGNCC | 4 cut(s) | 5, 119, 352, 638 |
| PspPPI | RGGWCCY | 2 cut(s) | 5, 352 |
| PspXI | VCTCGAGB | 1 cut(s) | 347 |
| RsaI | GTAC | 5 cut(s) | 506, 526, 535, 689, 1058 |
| RsaNI | GTAC | 5 cut(s) | 505, 525, 534, 688, 1057 |
| RseI | CAYNNNNRTG | 1 cut(s) | 588 |
| SacI | GAGCTC | 1 cut(s) | 323 |
| SalI | GTCGAC | 2 cut(s) | 374, 422 |
| SaqAI | TTAA | 3 cut(s) | 384, 543, 680 |
| SatI | GCNGC | 1 cut(s) | 257 |
| Sau3AI | GATC | 2 cut(s) | 712, 990 |
| Sau96I | GGNCC | 4 cut(s) | 5, 119, 352, 638 |
| ScaI | AGTACT | 1 cut(s) | 526 |
| SchI | GAGTC | 3 cut(s) | 41, 236, 964 |
| ScrFI | CCNGG | 2 cut(s) | 419, 554 |
| SduI | GDGCHC | 2 cut(s) | 323, 450 |
| SexAI | ACCWGGT | 1 cut(s) | 552 |
| SfaNI | GCATC | 7 cut(s) | 490, 642, 684, 731, 774, 778, 922 |
| SfoI | GGCGCC | 1 cut(s) | 367 |
| Sfr274I | CTCGAG | 1 cut(s) | 347 |
| SinI | GGWCC | 3 cut(s) | 5, 352, 638 |
| SlaI | CTCGAG | 1 cut(s) | 347 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 588 |
| SmlI | CTYRAG | 4 cut(s) | 347, 356, 957, 972 |
| SmoI | CTYRAG | 4 cut(s) | 347, 356, 957, 972 |
| Sse9I | AATT | 2 cut(s) | 380, 1028 |
| SsiI | CCGC | 8 cut(s) | 11, 20, 33, 42, 221, 252, 257, 324 |
| SspDI | GGCGCC | 1 cut(s) | 365 |
| SspMI | CTAG | 3 cut(s) | 59, 141, 177 |
| SstI | GAGCTC | 1 cut(s) | 323 |
| StyD4I | CCNGG | 2 cut(s) | 417, 552 |
| StyI | CCWWGG | 3 cut(s) | 283, 517, 634 |
| TaaI | ACNGT | 1 cut(s) | 642 |
| TaqI | TCGA | 5 cut(s) | 305, 348, 375, 423, 463 |
| TasI | AATT | 2 cut(s) | 380, 1028 |
| TatI | WGTACW | 3 cut(s) | 524, 687, 1056 |
| TauI | GCSGC | 1 cut(s) | 259 |
| TfiI | GAWTC | 1 cut(s) | 307 |
| Tru1I | TTAA | 3 cut(s) | 384, 543, 680 |
| Tru9I | TTAA | 3 cut(s) | 384, 543, 680 |
| TscAI | CASTG | 1 cut(s) | 480 |
| TspDTI | ATGAA | 6 cut(s) | 119, 408, 458, 603, 932, 1017 |
| TspGWI | ACGGA | 1 cut(s) | 872 |
| TspRI | CASTG | 1 cut(s) | 480 |
| VpaK11BI | GGWCC | 3 cut(s) | 5, 352, 638 |
| XapI | RAATTY | 1 cut(s) | 1028 |
| XceI | RCATGY | 2 cut(s) | 412, 587 |
| XhoI | CTCGAG | 1 cut(s) | 347 |
| XmiI | GTMKAC | 2 cut(s) | 375, 423 |
| XspI | CTAG | 3 cut(s) | 59, 141, 177 |
| ZrmI | AGTACT | 1 cut(s) | 526 |