Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024157.1

Orthogroup ID

OG0003377

Physical Location & Seq

Genomic Coordinates Forward (+)

10 .. 503

Gene Structure 494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024157.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atgaagttaacatggaatctggctgcgcctggtttgattataaggaaaggaaaacaagttcatgaatctgaatctagtgatgattctcatcaactgtcgacatcttgctccacaggagctggactcctggcagaggatgctgtagcattgttgctaaagcataacagaggctattatgcatcagaagatgataaatcctctgagagccaagatacgtcacaagggaaacaacagagcaagggtaagaagcccaaaaaagagtacttggtccggagagaccttcatttcttgatagtgcatgattctactgaaacatgggtgcctcctgaaggacaatctggtgatggacgaacatccttgaaagatcgatatggctactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

126

Amino Acids

13.98

Weight (kDa)

6.97

Isoelectric Point (pI)

47.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38840
fragaria_vesca	FvH4_6g46110 FvH4_6g46110 FvH4_6g46110 FvH4_6g46110
malus_domestica	MD09G1076900.v1.1
prunus_persica	Prupe.3G247200_v2.0.a1
pyrus_communis	pycom09g00410
rosa_chinensis	RchiOBHm_Chr2g0164301 RchiOBHm_Chr2g0164311 RchiOBHm_Chr2g0164441 RchiOBHm_Chr2g0164481
rosa_laevigata	RLG00000021452 RLG00000021462
rosa_multiflora	Rmu_sc0000144.1_g000022 Rmu_sc0002082.1_g000003 Rmu_sc0007154.1_g000011 Rmu_sc0020353.1_g000001 Rmu_sc0024157.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086560 Rroxscaffold_2G00086640
rosa_rugosa	Rorug02G0508000 Rorug02G0508500 Rorug02G0508700
rosa_samantha	Rh2AG575900 Rh2AG576000 Rh2AG576700 Rh2BG587700 Rh2CG557600 Rh2CG557700 Rh2CG557800 Rh2CG558500 Rh2DG596400 Rh2DG598200
rosa_wichuraiana	Rw2G047780 Rw2G047870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	41
AccB1I	GGYRCC	1 cut(s)	319
AccI	GTMKAC	1 cut(s)	98
AccIII	TCCGGA	1 cut(s)	270
AcuI	CTGAAG	1 cut(s)	348
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	2 cut(s)	133, 329
AgsI	TTSAA	1 cut(s)	361
AjnI	CCWGG	2 cut(s)	28, 126
AloI	GAACNNNNNNTCC	2 cut(s)	42, 74
AluBI	AGCT	1 cut(s)	119
AluI	AGCT	1 cut(s)	119
Alw26I	GTCTC	1 cut(s)	270
AlwNI	CAGNNNCTG	1 cut(s)	119
Aor13HI	TCCGGA	1 cut(s)	270
ApeKI	GCWGC	1 cut(s)	23
AspLEI	GCGC	1 cut(s)	28
AspS9I	GGNCC	1 cut(s)	268
AsuHPI	GGTGA	1 cut(s)	353
AvaII	GGWCC	1 cut(s)	268
BanI	GGYRCC	1 cut(s)	319
BbvI	GCAGC	1 cut(s)	10
BccI	CCATC	1 cut(s)	338
BciT130I	CCWGG	2 cut(s)	30, 128
BcoDI	GTCTC	1 cut(s)	270
BfaI	CTAG	1 cut(s)	75
BfmI	CTRYAG	1 cut(s)	141
BisI	GCNGC	1 cut(s)	24
BlsI	GCNGC	1 cut(s)	25
BmcAI	AGTACT	1 cut(s)	263
Bme1390I	CCNGG	2 cut(s)	30, 128
Bme18I	GGWCC	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	268
BmiI	GGNNCC	1 cut(s)	321
BmrFI	CCNGG	2 cut(s)	30, 128
BmsI	GCATC	2 cut(s)	127, 188
BplI	GAGNNNNNCTC	2 cut(s)	108, 140
Bsa29I	ATCGAT	1 cut(s)	367
BsaBI	GATNNNNATC	1 cut(s)	87
BsaI	GGTCTC	1 cut(s)	270
BsaWI	WCCGGW	1 cut(s)	270
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 329
Bse8I	GATNNNNATC	1 cut(s)	87
BseAI	TCCGGA	1 cut(s)	270
BseBI	CCWGG	2 cut(s)	30, 128
BseCI	ATCGAT	1 cut(s)	367
BseGI	GGATG	2 cut(s)	142, 353
BseJI	GATNNNNATC	1 cut(s)	87
BseLI	CCNNNNNNNGG	2 cut(s)	133, 329
BseMII	CTCAG	1 cut(s)	192
BseXI	GCAGC	1 cut(s)	10
BshNI	GGYRCC	1 cut(s)	319
BshVI	ATCGAT	1 cut(s)	367
BsiSI	CCGG	1 cut(s)	271
BslI	CCNNNNNNNGG	2 cut(s)	133, 329
BsmAI	GTCTC	1 cut(s)	270
Bso31I	GGTCTC	1 cut(s)	270
Bsp13I	TCCGGA	1 cut(s)	270
Bsp143I	GATC	1 cut(s)	364
BspCNI	CTCAG	1 cut(s)	193
BspDI	ATCGAT	1 cut(s)	367
BspEI	TCCGGA	1 cut(s)	270
BspHI	TCATGA	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	321
BspT107I	GGYRCC	1 cut(s)	319
BspTNI	GGTCTC	1 cut(s)	270
BssMI	GATC	1 cut(s)	364
Bst2UI	CCWGG	2 cut(s)	30, 128
Bst4CI	ACNGT	1 cut(s)	96
BstAPI	GCANNNNNTGC	1 cut(s)	137
BstDEI	CTNAG	1 cut(s)	201
BstENI	CCTNNNNNAGG	2 cut(s)	131, 327
BstF5I	GGATG	2 cut(s)	142, 353
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	1 cut(s)	367
BstMAI	GTCTC	1 cut(s)	270
BstMBI	GATC	1 cut(s)	364
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstNI	CCWGG	2 cut(s)	30, 128
BstSCI	CCNGG	2 cut(s)	28, 126
BstSFI	CTRYAG	1 cut(s)	141
BstV1I	GCAGC	1 cut(s)	10
Bsu15I	ATCGAT	1 cut(s)	367
BsuTUI	ATCGAT	1 cut(s)	367
BtsCI	GGATG	2 cut(s)	142, 353
CaiI	CAGNNNCTG	1 cut(s)	119
CciI	TCATGA	1 cut(s)	61
CfoI	GCGC	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	268
ClaI	ATCGAT	1 cut(s)	367
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	4 cut(s)	12, 62, 299, 315
CviJI	RGCY	6 cut(s)	23, 119, 171, 207, 250, 375
CviKI_1	RGCY	6 cut(s)	23, 119, 171, 207, 250, 375
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	1 cut(s)	366
DpnII	GATC	1 cut(s)	364
Eco31I	GGTCTC	1 cut(s)	270
Eco47I	GGWCC	1 cut(s)	268
Eco57I	CTGAAG	1 cut(s)	348
EcoNI	CCTNNNNNAGG	2 cut(s)	131, 327
EcoRII	CCWGG	2 cut(s)	28, 126
EcoT22I	ATGCAT	1 cut(s)	181
FaeI	CATG	4 cut(s)	15, 65, 302, 318
FaiI	YATR	8 cut(s)	13, 41, 63, 162, 177, 300, 316, 372
FatI	CATG	4 cut(s)	11, 61, 298, 314
FblI	GTMKAC	1 cut(s)	98
Fnu4HI	GCNGC	1 cut(s)	24
FokI	GGATG	2 cut(s)	149, 340
Fsp4HI	GCNGC	1 cut(s)	24
FspBI	CTAG	1 cut(s)	75
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	1 cut(s)	24
HapII	CCGG	1 cut(s)	271
HhaI	GCGC	1 cut(s)	28
Hin1II	CATG	4 cut(s)	15, 65, 302, 318
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HincII	GTYRAC	2 cut(s)	9, 99
HindII	GTYRAC	2 cut(s)	9, 99
HinfI	GANTC	6 cut(s)	16, 65, 71, 83, 123, 302
HpaI	GTTAAC	1 cut(s)	9
HpaII	CCGG	1 cut(s)	271
HphI	GGTGA	1 cut(s)	353
Hpy166II	GTNNAC	2 cut(s)	9, 99
Hpy188I	TCNGA	3 cut(s)	70, 184, 202
Hpy188III	TCNNGA	4 cut(s)	62, 271, 289, 326
Hpy8I	GTNNAC	2 cut(s)	9, 99
HpyAV	CCTTC	2 cut(s)	290, 323
HpyCH4III	ACNGT	1 cut(s)	96
HpyCH4IV	ACGT	1 cut(s)	215
HpyCH4V	TGCA	2 cut(s)	179, 298
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpyF3I	CTNAG	1 cut(s)	201
HpySE526I	ACGT	1 cut(s)	215
Hsp92II	CATG	4 cut(s)	15, 65, 302, 318
HspAI	GCGC	1 cut(s)	26
Kpn2I	TCCGGA	1 cut(s)	270
KspAI	GTTAAC	1 cut(s)	9
Kzo9I	GATC	1 cut(s)	364
LmnI	GCTCC	2 cut(s)	113, 116
Lsp1109I	GCAGC	1 cut(s)	10
LweI	GCATC	2 cut(s)	127, 188
MaeI	CTAG	1 cut(s)	75
MaeII	ACGT	1 cut(s)	215
MaeIII	GTNAC	1 cut(s)	216
MalI	GATC	1 cut(s)	366
MboI	GATC	1 cut(s)	364
MboII	GAAGA	1 cut(s)	197
MlyI	GAGTC	1 cut(s)	117
MnlI	CCTC	4 cut(s)	127, 161, 208, 333
Mph1103I	ATGCAT	1 cut(s)	181
MroI	TCCGGA	1 cut(s)	270
MseI	TTAA	1 cut(s)	8
MspI	CCGG	1 cut(s)	271
MspR9I	CCNGG	2 cut(s)	30, 128
MvaI	CCWGG	2 cut(s)	30, 128
MwoI	GCNNNNNNNGC	1 cut(s)	137
NdeII	GATC	1 cut(s)	364
NlaIII	CATG	4 cut(s)	15, 65, 302, 318
NlaIV	GGNNCC	1 cut(s)	321
NmuCI	GTSAC	1 cut(s)	216
NsiI	ATGCAT	1 cut(s)	181
PagI	TCATGA	1 cut(s)	61
PfeI	GAWTC	5 cut(s)	16, 65, 71, 83, 302
PkrI	GCNGC	1 cut(s)	25
PleI	GAGTC	1 cut(s)	117
PpsI	GAGTC	1 cut(s)	117
PsiI	TTATAA	1 cut(s)	41
Psp6I	CCWGG	2 cut(s)	28, 126
PspGI	CCWGG	2 cut(s)	28, 126
PspN4I	GGNNCC	1 cut(s)	321
PspPI	GGNCC	1 cut(s)	268
PstNI	CAGNNNCTG	1 cut(s)	119
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
SalI	GTCGAC	1 cut(s)	97
SaqAI	TTAA	1 cut(s)	8
SatI	GCNGC	1 cut(s)	24
Sau3AI	GATC	1 cut(s)	364
Sau96I	GGNCC	1 cut(s)	268
ScaI	AGTACT	1 cut(s)	263
SchI	GAGTC	1 cut(s)	117
ScrFI	CCNGG	2 cut(s)	30, 128
SetI	ASST	3 cut(s)	121, 218, 282
SfaNI	GCATC	2 cut(s)	127, 188
SfcI	CTRYAG	1 cut(s)	141
SinI	GGWCC	1 cut(s)	268
SspMI	CTAG	1 cut(s)	75
StyD4I	CCNGG	2 cut(s)	28, 126
TaaI	ACNGT	1 cut(s)	96
TaiI	ACGT	1 cut(s)	218
TaqI	TCGA	2 cut(s)	98, 367
TatI	WGTACW	1 cut(s)	261
TfiI	GAWTC	5 cut(s)	16, 65, 71, 83, 302
Tru1I	TTAA	1 cut(s)	8
Tru9I	TTAA	1 cut(s)	8
TseFI	GTSAC	1 cut(s)	216
TseI	GCWGC	1 cut(s)	23
Tsp45I	GTSAC	1 cut(s)	216
TspDTI	ATGAA	4 cut(s)	17, 50, 78, 272
VpaK11BI	GGWCC	1 cut(s)	268
XagI	CCTNNNNNAGG	2 cut(s)	131, 327
XmiI	GTMKAC	1 cut(s)	98
XspI	CTAG	1 cut(s)	75
ZrmI	AGTACT	1 cut(s)	263
Zsp2I	ATGCAT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.