Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003377

Physical Location & Seq

Genomic Coordinates Reverse (-)

80590551 .. 80591024

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG575900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGAAGTTAACATGGAATCTGGCTGCGCCTGGTTTGATTATAAGGAAAGGAAAACAAGTTCATGAATCTGAAGCTAGTGATGATTCTCATCAACTGTCGACATCTTCCTCCACAGAAGCTGGACTCCTGGCAGAGGATGCTGTAGCATTGTTGCTAAAGCATAACAGAGGCTATTATGCATCAGAAGATGATAAATCCTCTGAGAGCCAAGATATGTCACAAGGGAAACAACAGAGCAAGGGTAAGAAGCCCAAAAAAGAGTACTTGGTCCGGAGAGATCTTCATTTCTTGATAGTGCATGATTCTACTGAAACATGGGTGCCTCCTGAAGATGAGAGATCTCTTAATAACTGGTATATATCTTCATGGCTCATGCAGGACAATCTGGTGATGGACGAACATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

135

Amino Acids

15.38

Weight (kDa)

5.46

Isoelectric Point (pI)

55.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38840
fragaria_vesca	FvH4_6g46110 FvH4_6g46110 FvH4_6g46110 FvH4_6g46110
malus_domestica	MD09G1076900.v1.1
prunus_persica	Prupe.3G247200_v2.0.a1
pyrus_communis	pycom09g00410
rosa_chinensis	RchiOBHm_Chr2g0164301 RchiOBHm_Chr2g0164311 RchiOBHm_Chr2g0164441 RchiOBHm_Chr2g0164481
rosa_laevigata	RLG00000021452 RLG00000021462
rosa_multiflora	Rmu_sc0000144.1_g000022 Rmu_sc0002082.1_g000003 Rmu_sc0007154.1_g000011 Rmu_sc0020353.1_g000001 Rmu_sc0024157.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086560 Rroxscaffold_2G00086640
rosa_rugosa	Rorug02G0508000 Rorug02G0508500 Rorug02G0508700
rosa_samantha	Rh2AG575900 Rh2AG576000 Rh2AG576700 Rh2BG587700 Rh2CG557600 Rh2CG557700 Rh2CG557800 Rh2CG558500 Rh2DG596400 Rh2DG598200
rosa_wichuraiana	Rw2G047780 Rw2G047870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	41
AccB1I	GGYRCC	1 cut(s)	319
AccI	GTMKAC	1 cut(s)	98
AccIII	TCCGGA	1 cut(s)	270
AcuI	CTGAAG	2 cut(s)	90, 348
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	1 cut(s)	133
AjnI	CCWGG	2 cut(s)	28, 126
AloI	GAACNNNNNNTCC	2 cut(s)	42, 74
AluBI	AGCT	2 cut(s)	74, 119
AluI	AGCT	2 cut(s)	74, 119
AlwNI	CAGNNNCTG	1 cut(s)	119
Aor13HI	TCCGGA	1 cut(s)	270
ApeKI	GCWGC	1 cut(s)	23
AspLEI	GCGC	1 cut(s)	28
AspS9I	GGNCC	1 cut(s)	268
AsuHPI	GGTGA	1 cut(s)	400
AvaII	GGWCC	1 cut(s)	268
BanI	GGYRCC	1 cut(s)	319
BbvI	GCAGC	1 cut(s)	10
BccI	CCATC	1 cut(s)	385
BciT130I	CCWGG	2 cut(s)	30, 128
BfaI	CTAG	1 cut(s)	75
BfmI	CTRYAG	1 cut(s)	141
BglII	AGATCT	2 cut(s)	277, 338
BisI	GCNGC	1 cut(s)	24
BlsI	GCNGC	1 cut(s)	25
BmcAI	AGTACT	1 cut(s)	263
Bme1390I	CCNGG	2 cut(s)	30, 128
Bme18I	GGWCC	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	268
BmiI	GGNNCC	1 cut(s)	321
BmrFI	CCNGG	2 cut(s)	30, 128
BmsI	GCATC	2 cut(s)	127, 188
BsaBI	GATNNNNATC	1 cut(s)	87
BsaWI	WCCGGW	1 cut(s)	270
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse1I	ACTGG	1 cut(s)	356
Bse8I	GATNNNNATC	1 cut(s)	87
BseAI	TCCGGA	1 cut(s)	270
BseBI	CCWGG	2 cut(s)	30, 128
BseGI	GGATG	2 cut(s)	142, 400
BseJI	GATNNNNATC	1 cut(s)	87
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMII	CTCAG	1 cut(s)	192
BseNI	ACTGG	1 cut(s)	356
BseXI	GCAGC	1 cut(s)	10
BshNI	GGYRCC	1 cut(s)	319
BsiSI	CCGG	1 cut(s)	271
BslI	CCNNNNNNNGG	1 cut(s)	133
Bsp13I	TCCGGA	1 cut(s)	270
Bsp143I	GATC	2 cut(s)	277, 338
BspCNI	CTCAG	1 cut(s)	193
BspEI	TCCGGA	1 cut(s)	270
BspHI	TCATGA	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	321
BspT107I	GGYRCC	1 cut(s)	319
BsrI	ACTGG	1 cut(s)	356
BssMI	GATC	2 cut(s)	277, 338
Bst2UI	CCWGG	2 cut(s)	30, 128
Bst4CI	ACNGT	1 cut(s)	96
BstAPI	GCANNNNNTGC	1 cut(s)	137
BstDEI	CTNAG	1 cut(s)	201
BstENI	CCTNNNNNAGG	1 cut(s)	131
BstF5I	GGATG	2 cut(s)	142, 400
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	2 cut(s)	280, 341
BstMBI	GATC	2 cut(s)	277, 338
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstNI	CCWGG	2 cut(s)	30, 128
BstSCI	CCNGG	2 cut(s)	28, 126
BstSFI	CTRYAG	1 cut(s)	141
BstV1I	GCAGC	1 cut(s)	10
BstX2I	RGATCY	2 cut(s)	277, 338
BstYI	RGATCY	2 cut(s)	277, 338
BtsCI	GGATG	2 cut(s)	142, 400
CaiI	CAGNNNCTG	1 cut(s)	119
CciI	TCATGA	1 cut(s)	61
CfoI	GCGC	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	268
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	6 cut(s)	12, 62, 299, 315, 366, 373
CviJI	RGCY	7 cut(s)	23, 74, 119, 171, 207, 250, 370
CviKI_1	RGCY	7 cut(s)	23, 74, 119, 171, 207, 250, 370
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	2 cut(s)	279, 340
DpnII	GATC	2 cut(s)	277, 338
Eco47I	GGWCC	1 cut(s)	268
Eco57I	CTGAAG	2 cut(s)	90, 348
EcoNI	CCTNNNNNAGG	1 cut(s)	131
EcoRII	CCWGG	2 cut(s)	28, 126
EcoT22I	ATGCAT	1 cut(s)	181
FaeI	CATG	6 cut(s)	15, 65, 302, 318, 369, 376
FatI	CATG	6 cut(s)	11, 61, 298, 314, 365, 372
FblI	GTMKAC	1 cut(s)	98
Fnu4HI	GCNGC	1 cut(s)	24
FokI	GGATG	2 cut(s)	149, 387
Fsp4HI	GCNGC	1 cut(s)	24
FspBI	CTAG	1 cut(s)	75
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	1 cut(s)	24
HapII	CCGG	1 cut(s)	271
HhaI	GCGC	1 cut(s)	28
Hin1II	CATG	6 cut(s)	15, 65, 302, 318, 369, 376
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HincII	GTYRAC	2 cut(s)	9, 99
HindII	GTYRAC	2 cut(s)	9, 99
HinfI	GANTC	5 cut(s)	16, 65, 83, 123, 302
HpaI	GTTAAC	1 cut(s)	9
HpaII	CCGG	1 cut(s)	271
HphI	GGTGA	1 cut(s)	400
Hpy166II	GTNNAC	2 cut(s)	9, 99
Hpy188I	TCNGA	3 cut(s)	70, 184, 202
Hpy188III	TCNNGA	4 cut(s)	62, 271, 289, 326
Hpy8I	GTNNAC	2 cut(s)	9, 99
HpyCH4III	ACNGT	1 cut(s)	96
HpyCH4V	TGCA	3 cut(s)	179, 298, 376
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpyF3I	CTNAG	1 cut(s)	201
Hsp92II	CATG	6 cut(s)	15, 65, 302, 318, 369, 376
HspAI	GCGC	1 cut(s)	26
Kpn2I	TCCGGA	1 cut(s)	270
KspAI	GTTAAC	1 cut(s)	9
Kzo9I	GATC	2 cut(s)	277, 338
Lsp1109I	GCAGC	1 cut(s)	10
LweI	GCATC	2 cut(s)	127, 188
MaeI	CTAG	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	216
MalI	GATC	2 cut(s)	279, 340
MboI	GATC	2 cut(s)	277, 338
MboII	GAAGA	5 cut(s)	96, 197, 272, 341, 354
MflI	RGATCY	2 cut(s)	277, 338
MlyI	GAGTC	1 cut(s)	117
MnlI	CCTC	5 cut(s)	118, 127, 161, 208, 333
Mph1103I	ATGCAT	1 cut(s)	181
MroI	TCCGGA	1 cut(s)	270
MseI	TTAA	2 cut(s)	8, 345
MspI	CCGG	1 cut(s)	271
MspR9I	CCNGG	2 cut(s)	30, 128
MvaI	CCWGG	2 cut(s)	30, 128
MwoI	GCNNNNNNNGC	1 cut(s)	137
NdeII	GATC	2 cut(s)	277, 338
NlaIII	CATG	6 cut(s)	15, 65, 302, 318, 369, 376
NlaIV	GGNNCC	1 cut(s)	321
NmuCI	GTSAC	1 cut(s)	216
NsiI	ATGCAT	1 cut(s)	181
PagI	TCATGA	1 cut(s)	61
PfeI	GAWTC	4 cut(s)	16, 65, 83, 302
PkrI	GCNGC	1 cut(s)	25
PleI	GAGTC	1 cut(s)	117
PpsI	GAGTC	1 cut(s)	117
PsiI	TTATAA	1 cut(s)	41
Psp6I	CCWGG	2 cut(s)	28, 126
PspGI	CCWGG	2 cut(s)	28, 126
PspN4I	GGNNCC	1 cut(s)	321
PspPI	GGNCC	1 cut(s)	268
PstNI	CAGNNNCTG	1 cut(s)	119
PsuI	RGATCY	2 cut(s)	277, 338
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
SalI	GTCGAC	1 cut(s)	97
SaqAI	TTAA	2 cut(s)	8, 345
SatI	GCNGC	1 cut(s)	24
Sau3AI	GATC	2 cut(s)	277, 338
Sau96I	GGNCC	1 cut(s)	268
ScaI	AGTACT	1 cut(s)	263
SchI	GAGTC	1 cut(s)	117
ScrFI	CCNGG	2 cut(s)	30, 128
SetI	ASST	2 cut(s)	76, 121
SfaNI	GCATC	2 cut(s)	127, 188
SfcI	CTRYAG	1 cut(s)	141
SinI	GGWCC	1 cut(s)	268
SspMI	CTAG	1 cut(s)	75
StyD4I	CCNGG	2 cut(s)	28, 126
TaaI	ACNGT	1 cut(s)	96
TaqI	TCGA	1 cut(s)	98
TatI	WGTACW	1 cut(s)	261
TfiI	GAWTC	4 cut(s)	16, 65, 83, 302
Tru1I	TTAA	2 cut(s)	8, 345
Tru9I	TTAA	2 cut(s)	8, 345
TseFI	GTSAC	1 cut(s)	216
TseI	GCWGC	1 cut(s)	23
Tsp45I	GTSAC	1 cut(s)	216
TspDTI	ATGAA	5 cut(s)	17, 50, 78, 272, 354
VpaK11BI	GGWCC	1 cut(s)	268
XagI	CCTNNNNNAGG	1 cut(s)	131
XmiI	GTMKAC	1 cut(s)	98
XspI	CTAG	1 cut(s)	75
ZrmI	AGTACT	1 cut(s)	263
Zsp2I	ATGCAT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.