Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003377

Physical Location & Seq

Genomic Coordinates Reverse (-)

75562639 .. 75563728

Gene Structure 1090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021452

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTCTGTGGTTTCATCTAAGCTAGTGCTTGATAAAACTGAGCAATTGCAAAAGGAACTCTCAGATCTCCAGTCCGAATATGACAGGGCAGTCTTCCTTTTGAAGATTGCTGATTCAACAGATGAAGCAGCCAAGAAAAGGGATTCAAAGGTTCTCACTGATGCAACTGAAGGAAAAAGTGTTGTGTATACTGTTGCAAAGCCCCAGTGGCTTGGAGCTATAGCGTACAAGAGGATTGAGGAGGGTCATCAAGAGGCAGCATCTATGAATGAGCATGAGTCTGAAGTATTTGCGGACTATAAGGACAGGAAGAAGATTTTGGAGAATGATGTTAACATGGAATCTGGCTGCGCCTGTGATGATTCTCATCAACTGTCGACATCTTCCTCCACAGGAGCGGGACTCCTGGCAGAGGATGCTGTAGCATTGTTGCTAAAGCATAACAGAGGCTATTATGCATCAGAAGATGATAAATCCACTGAGAGCCAAGATACGTCACAAGGGAAACAACAGAGCAAGGGTAAGAAGCCCAAAAAAGAGTACTTGGTCCGGAGAGACCTTCATTTCTTGATAGTGCATGATTCTACTGAAACATGGGTGCCTCCTGAAGGACAATCTGGTGATGGACGAACATCCTTGAAAGATCGATATGGCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

220

Amino Acids

24.43

Weight (kDa)

5.34

Isoelectric Point (pI)

50.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38840
fragaria_vesca	FvH4_6g46110 FvH4_6g46110 FvH4_6g46110 FvH4_6g46110
malus_domestica	MD09G1076900.v1.1
prunus_persica	Prupe.3G247200_v2.0.a1
pyrus_communis	pycom09g00410
rosa_chinensis	RchiOBHm_Chr2g0164301 RchiOBHm_Chr2g0164311 RchiOBHm_Chr2g0164441 RchiOBHm_Chr2g0164481
rosa_laevigata	RLG00000021452 RLG00000021462
rosa_multiflora	Rmu_sc0000144.1_g000022 Rmu_sc0002082.1_g000003 Rmu_sc0007154.1_g000011 Rmu_sc0020353.1_g000001 Rmu_sc0024157.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086560 Rroxscaffold_2G00086640
rosa_rugosa	Rorug02G0508000 Rorug02G0508500 Rorug02G0508700
rosa_samantha	Rh2AG575900 Rh2AG576000 Rh2AG576700 Rh2BG587700 Rh2CG557600 Rh2CG557700 Rh2CG557800 Rh2CG558500 Rh2DG596400 Rh2DG598200
rosa_wichuraiana	Rw2G047780 Rw2G047870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	89
AccB1I	GGYRCC	1 cut(s)	598
AccBSI	CCGCTC	1 cut(s)	398
AccI	GTMKAC	2 cut(s)	188, 377
AccIII	TCCGGA	1 cut(s)	549
AciI	CCGC	2 cut(s)	293, 398
AcuI	CTGAAG	3 cut(s)	189, 303, 627
AfaI	GTAC	2 cut(s)	227, 542
AfiI	CCNNNNNNNGG	3 cut(s)	138, 412, 608
AgsI	TTSAA	4 cut(s)	103, 117, 147, 640
AjnI	CCWGG	1 cut(s)	405
AjuI	GAANNNNNNNTTGG	2 cut(s)	302, 334
AluBI	AGCT	2 cut(s)	22, 218
AluI	AGCT	2 cut(s)	22, 218
Alw26I	GTCTC	1 cut(s)	549
Aor13HI	TCCGGA	1 cut(s)	549
ApeKI	GCWGC	3 cut(s)	128, 257, 348
AspLEI	GCGC	1 cut(s)	353
AspS9I	GGNCC	1 cut(s)	547
AsuHPI	GGTGA	1 cut(s)	632
AvaII	GGWCC	1 cut(s)	547
BanI	GGYRCC	1 cut(s)	598
BbsI	GAAGAC	1 cut(s)	85
BbvI	GCAGC	3 cut(s)	140, 269, 335
BccI	CCATC	1 cut(s)	617
BciT130I	CCWGG	1 cut(s)	407
BcoDI	GTCTC	1 cut(s)	549
BfaI	CTAG	1 cut(s)	23
BfmI	CTRYAG	2 cut(s)	219, 420
BglI	GCCNNNNNGGC	1 cut(s)	208
BglII	AGATCT	1 cut(s)	64
BisI	GCNGC	3 cut(s)	129, 258, 349
BlsI	GCNGC	3 cut(s)	130, 259, 350
BmcAI	AGTACT	1 cut(s)	542
Bme1390I	CCNGG	1 cut(s)	407
Bme18I	GGWCC	1 cut(s)	547
BmgT120I	GGNCC	1 cut(s)	547
BmiI	GGNNCC	1 cut(s)	600
BmrFI	CCNGG	1 cut(s)	407
BmrI	ACTGGG	1 cut(s)	199
BmsI	GCATC	4 cut(s)	151, 269, 406, 467
BmuI	ACTGGG	1 cut(s)	199
BpiI	GAAGAC	1 cut(s)	85
BplI	GAGNNNNNCTC	2 cut(s)	387, 419
BpmI	CTGGAG	1 cut(s)	53
Bsa29I	ATCGAT	1 cut(s)	646
BsaBI	GATNNNNATC	1 cut(s)	366
BsaI	GGTCTC	1 cut(s)	549
BsaWI	WCCGGW	1 cut(s)	549
Bsc4I	CCNNNNNNNGG	3 cut(s)	138, 412, 608
Bse1I	ACTGG	2 cut(s)	70, 205
Bse8I	GATNNNNATC	1 cut(s)	366
BseAI	TCCGGA	1 cut(s)	549
BseBI	CCWGG	1 cut(s)	407
BseCI	ATCGAT	1 cut(s)	646
BseGI	GGATG	2 cut(s)	421, 632
BseJI	GATNNNNATC	1 cut(s)	366
BseLI	CCNNNNNNNGG	3 cut(s)	138, 412, 608
BseMII	CTCAG	3 cut(s)	30, 75, 471
BseNI	ACTGG	2 cut(s)	70, 205
BseRI	GAGGAG	1 cut(s)	254
BseXI	GCAGC	3 cut(s)	140, 269, 335
BshNI	GGYRCC	1 cut(s)	598
BshVI	ATCGAT	1 cut(s)	646
BsiSI	CCGG	1 cut(s)	550
BslFI	GGGAC	1 cut(s)	414
BslI	CCNNNNNNNGG	3 cut(s)	138, 412, 608
BsmAI	GTCTC	1 cut(s)	549
BsmFI	GGGAC	1 cut(s)	414
Bso31I	GGTCTC	1 cut(s)	549
Bsp13I	TCCGGA	1 cut(s)	549
Bsp143I	GATC	2 cut(s)	64, 643
BspACI	CCGC	2 cut(s)	293, 398
BspCNI	CTCAG	3 cut(s)	31, 74, 472
BspDI	ATCGAT	1 cut(s)	646
BspEI	TCCGGA	1 cut(s)	549
BspLI	GGNNCC	1 cut(s)	600
BspT107I	GGYRCC	1 cut(s)	598
BspTNI	GGTCTC	1 cut(s)	549
BsrBI	CCGCTC	1 cut(s)	398
BsrI	ACTGG	2 cut(s)	70, 205
BssMI	GATC	2 cut(s)	64, 643
BssNAI	GTATAC	1 cut(s)	189
Bst1107I	GTATAC	1 cut(s)	189
Bst2UI	CCWGG	1 cut(s)	407
Bst4CI	ACNGT	2 cut(s)	193, 375
BstAPI	GCANNNNNTGC	1 cut(s)	416
BstDEI	CTNAG	4 cut(s)	18, 39, 61, 480
BstENI	CCTNNNNNAGG	2 cut(s)	410, 606
BstF5I	GGATG	2 cut(s)	421, 632
BstHHI	GCGC	1 cut(s)	353
BstKTI	GATC	2 cut(s)	67, 646
BstMAI	GTCTC	1 cut(s)	549
BstMBI	GATC	2 cut(s)	64, 643
BstMWI	GCNNNNNNNGC	2 cut(s)	208, 416
BstNI	CCWGG	1 cut(s)	407
BstSCI	CCNGG	1 cut(s)	405
BstSFI	CTRYAG	2 cut(s)	219, 420
BstV1I	GCAGC	3 cut(s)	140, 269, 335
BstV2I	GAAGAC	1 cut(s)	85
BstX2I	RGATCY	1 cut(s)	64
BstXI	CCANNNNNNTGG	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	64
BstZ17I	GTATAC	1 cut(s)	189
Bsu15I	ATCGAT	1 cut(s)	646
BsuTUI	ATCGAT	1 cut(s)	646
BtsCI	GGATG	2 cut(s)	421, 632
BtsIMutI	CAGTG	3 cut(s)	156, 212, 477
CfoI	GCGC	1 cut(s)	353
Cfr13I	GGNCC	1 cut(s)	547
ClaI	ATCGAT	1 cut(s)	646
Csp6I	GTAC	2 cut(s)	226, 541
CviAII	CATG	4 cut(s)	275, 337, 578, 594
CviQI	GTAC	2 cut(s)	226, 541
DdeI	CTNAG	4 cut(s)	18, 39, 61, 480
DpnI	GATC	2 cut(s)	66, 645
DpnII	GATC	2 cut(s)	64, 643
DrdI	GACNNNNNNGTC	1 cut(s)	89
DseDI	GACNNNNNNGTC	1 cut(s)	89
Eco31I	GGTCTC	1 cut(s)	549
Eco47I	GGWCC	1 cut(s)	547
Eco57I	CTGAAG	3 cut(s)	189, 303, 627
EcoNI	CCTNNNNNAGG	2 cut(s)	410, 606
EcoRII	CCWGG	1 cut(s)	405
EcoT22I	ATGCAT	1 cut(s)	460
FaeI	CATG	4 cut(s)	278, 340, 581, 597
FaqI	GGGAC	1 cut(s)	414
FatI	CATG	4 cut(s)	274, 336, 577, 593
FauI	CCCGC	1 cut(s)	391
FblI	GTMKAC	2 cut(s)	188, 377
Fnu4HI	GCNGC	3 cut(s)	129, 258, 349
FokI	GGATG	2 cut(s)	428, 619
Fsp4HI	GCNGC	3 cut(s)	129, 258, 349
FspBI	CTAG	1 cut(s)	23
GlaI	GCGC	1 cut(s)	352
GluI	GCNGC	3 cut(s)	129, 258, 349
GsuI	CTGGAG	1 cut(s)	53
HapII	CCGG	1 cut(s)	550
HhaI	GCGC	1 cut(s)	353
Hin1II	CATG	4 cut(s)	278, 340, 581, 597
Hin6I	GCGC	1 cut(s)	351
HinP1I	GCGC	1 cut(s)	351
HincII	GTYRAC	2 cut(s)	334, 378
HindII	GTYRAC	2 cut(s)	334, 378
HinfI	GANTC	7 cut(s)	113, 143, 278, 341, 362, 402, 581
HpaI	GTTAAC	1 cut(s)	334
HpaII	CCGG	1 cut(s)	550
HphI	GGTGA	1 cut(s)	632
Hpy166II	GTNNAC	3 cut(s)	189, 334, 378
Hpy188I	TCNGA	4 cut(s)	64, 76, 283, 463
Hpy188III	TCNNGA	4 cut(s)	251, 550, 568, 605
Hpy8I	GTNNAC	3 cut(s)	189, 334, 378
HpyAV	CCTTC	3 cut(s)	164, 569, 602
HpyCH4III	ACNGT	2 cut(s)	193, 375
HpyCH4IV	ACGT	1 cut(s)	494
HpyCH4V	TGCA	5 cut(s)	49, 164, 197, 458, 577
HpyF10VI	GCNNNNNNNGC	2 cut(s)	208, 416
HpyF3I	CTNAG	4 cut(s)	18, 39, 61, 480
HpySE526I	ACGT	1 cut(s)	494
Hsp92II	CATG	4 cut(s)	278, 340, 581, 597
HspAI	GCGC	1 cut(s)	351
Kpn2I	TCCGGA	1 cut(s)	549
KspAI	GTTAAC	1 cut(s)	334
Kzo9I	GATC	2 cut(s)	64, 643
LmnI	GCTCC	2 cut(s)	215, 395
Lsp1109I	GCAGC	3 cut(s)	140, 269, 335
LweI	GCATC	4 cut(s)	151, 269, 406, 467
MaeI	CTAG	1 cut(s)	23
MaeII	ACGT	1 cut(s)	494
MaeIII	GTNAC	1 cut(s)	495
MalI	GATC	2 cut(s)	66, 645
MbiI	CCGCTC	1 cut(s)	398
MboI	GATC	2 cut(s)	64, 643
MboII	GAAGA	6 cut(s)	85, 115, 322, 325, 375, 476
MfeI	CAATTG	1 cut(s)	44
MflI	RGATCY	1 cut(s)	64
MluCI	AATT	1 cut(s)	44
MlyI	GAGTC	2 cut(s)	287, 396
MnlI	CCTC	8 cut(s)	225, 232, 235, 247, 397, 406, 440, 612
Mph1103I	ATGCAT	1 cut(s)	460
MroI	TCCGGA	1 cut(s)	549
MseI	TTAA	1 cut(s)	333
MspI	CCGG	1 cut(s)	550
MspR9I	CCNGG	1 cut(s)	407
MunI	CAATTG	1 cut(s)	44
MvaI	CCWGG	1 cut(s)	407
MwoI	GCNNNNNNNGC	2 cut(s)	208, 416
NdeII	GATC	2 cut(s)	64, 643
NlaIII	CATG	4 cut(s)	278, 340, 581, 597
NlaIV	GGNNCC	1 cut(s)	600
NmuCI	GTSAC	1 cut(s)	495
NsiI	ATGCAT	1 cut(s)	460
PfeI	GAWTC	5 cut(s)	113, 143, 341, 362, 581
PkrI	GCNGC	3 cut(s)	130, 259, 350
PleI	GAGTC	2 cut(s)	286, 396
PpsI	GAGTC	2 cut(s)	286, 396
Psp6I	CCWGG	1 cut(s)	405
PspGI	CCWGG	1 cut(s)	405
PspN4I	GGNNCC	1 cut(s)	600
PspPI	GGNCC	1 cut(s)	547
PsuI	RGATCY	1 cut(s)	64
RsaI	GTAC	2 cut(s)	227, 542
RsaNI	GTAC	2 cut(s)	226, 541
SalI	GTCGAC	1 cut(s)	376
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	3 cut(s)	129, 258, 349
Sau3AI	GATC	2 cut(s)	64, 643
Sau96I	GGNCC	1 cut(s)	547
ScaI	AGTACT	1 cut(s)	542
SchI	GAGTC	2 cut(s)	287, 396
ScrFI	CCNGG	1 cut(s)	407
SetI	ASST	5 cut(s)	24, 153, 220, 497, 561
SfaNI	GCATC	4 cut(s)	151, 269, 406, 467
SfcI	CTRYAG	2 cut(s)	219, 420
SinI	GGWCC	1 cut(s)	547
Sse9I	AATT	1 cut(s)	44
SsiI	CCGC	2 cut(s)	293, 398
SspMI	CTAG	1 cut(s)	23
StyD4I	CCNGG	1 cut(s)	405
TaaI	ACNGT	2 cut(s)	193, 375
TaiI	ACGT	1 cut(s)	497
TaqI	TCGA	2 cut(s)	377, 646
TasI	AATT	1 cut(s)	44
TatI	WGTACW	1 cut(s)	540
TfiI	GAWTC	5 cut(s)	113, 143, 341, 362, 581
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TscAI	CASTG	3 cut(s)	163, 212, 484
TseFI	GTSAC	1 cut(s)	495
TseI	GCWGC	3 cut(s)	128, 257, 348
Tsp45I	GTSAC	1 cut(s)	495
TspDTI	ATGAA	3 cut(s)	138, 281, 551
TspRI	CASTG	3 cut(s)	163, 212, 484
VpaK11BI	GGWCC	1 cut(s)	547
XagI	CCTNNNNNAGG	2 cut(s)	410, 606
XmiI	GTMKAC	2 cut(s)	188, 377
XspI	CTAG	1 cut(s)	23
ZrmI	AGTACT	1 cut(s)	542
Zsp2I	ATGCAT	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.