Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003377

Physical Location & Seq

Genomic Coordinates Reverse (-)

8809136 .. 8809751

Gene Structure 616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00086640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGTCCGGGCAATTGCAAAAGGAACTCTCGGATCTCCGGTCCGAATATGACGCGCGCAGTCTTCTGTTGAAGATTGCTGATTCAACGAGTGAAGCGACCAAGAAAAGGGATTCAAAGGTGCTTCTTGAAAATCCTGAAACTTCTGCTGCCACCAAGAAGCAACATCCACTTAAACCAAAGGAAACTTGTCCTTTGATAATCCGAGAAAGTGGCTCTATAAAGAAAGAGGAGAGTACGGATGTGATGTTGCATCTAGCAAGAAGCCGAGTCGGTGAGGTTCTCACCGATGCAACCGAAGGAAAAAGTGTTGTGTATCTTGTTGCAAAGCCCCAATGGCTTGGAGCTATAGCGTACAAGAGGATTGAGGAGGGTCATCAAGAGGCATCATCTATGAATGAGCACGAGTACGAAGTATTTGTGGACTATAAAGACGGGAAGAAGATTTTGGAGAATGAAGTTAACATGGAATGCGCTGCTTTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

161

Amino Acids

18.05

Weight (kDa)

5.66

Isoelectric Point (pI)

48.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38840
fragaria_vesca	FvH4_6g46110 FvH4_6g46110 FvH4_6g46110 FvH4_6g46110
malus_domestica	MD09G1076900.v1.1
prunus_persica	Prupe.3G247200_v2.0.a1
pyrus_communis	pycom09g00410
rosa_chinensis	RchiOBHm_Chr2g0164301 RchiOBHm_Chr2g0164311 RchiOBHm_Chr2g0164441 RchiOBHm_Chr2g0164481
rosa_laevigata	RLG00000021452 RLG00000021462
rosa_multiflora	Rmu_sc0000144.1_g000022 Rmu_sc0002082.1_g000003 Rmu_sc0007154.1_g000011 Rmu_sc0020353.1_g000001 Rmu_sc0024157.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086560 Rroxscaffold_2G00086640
rosa_rugosa	Rorug02G0508000 Rorug02G0508500 Rorug02G0508700
rosa_samantha	Rh2AG575900 Rh2AG576000 Rh2AG576700 Rh2BG587700 Rh2CG557600 Rh2CG557700 Rh2CG557800 Rh2CG558500 Rh2DG596400 Rh2DG598200
rosa_wichuraiana	Rw2G047780 Rw2G047870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	53, 55
AclWI	GGATC	1 cut(s)	39
AfaI	GTAC	3 cut(s)	235, 353, 407
AfiI	CCNNNNNNNGG	1 cut(s)	105
AgsI	TTSAA	4 cut(s)	70, 84, 114, 128
AjuI	GAANNNNNNNTTGG	2 cut(s)	428, 460
AluBI	AGCT	1 cut(s)	344
AluI	AGCT	1 cut(s)	344
Alw21I	GWGCWC	1 cut(s)	402
AlwI	GGATC	1 cut(s)	39
ApeKI	GCWGC	2 cut(s)	146, 473
AspLEI	GCGC	3 cut(s)	55, 57, 473
AspS9I	GGNCC	1 cut(s)	39
AsuC2I	CCSGG	1 cut(s)	7
AsuHPI	GGTGA	2 cut(s)	274, 284
AvaII	GGWCC	1 cut(s)	39
BauI	CACGAG	1 cut(s)	401
BbsI	GAAGAC	1 cut(s)	53
Bbv12I	GWGCWC	1 cut(s)	402
BbvI	GCAGC	2 cut(s)	133, 460
BcnI	CCSGG	1 cut(s)	7
BfaI	CTAG	1 cut(s)	254
BfmI	CTRYAG	1 cut(s)	345
BglI	GCCNNNNNGGC	1 cut(s)	334
BisI	GCNGC	2 cut(s)	147, 474
BlsI	GCNGC	2 cut(s)	148, 475
Bme1390I	CCNGG	1 cut(s)	7
Bme18I	GGWCC	1 cut(s)	39
BmgT120I	GGNCC	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	7
BmsI	GCATC	3 cut(s)	259, 277, 392
BpiI	GAAGAC	1 cut(s)	53
BpuMI	CCSGG	1 cut(s)	7
BsaWI	WCCGGW	1 cut(s)	36
Bsc4I	CCNNNNNNNGG	1 cut(s)	105
BseGI	GGATG	2 cut(s)	163, 244
BseLI	CCNNNNNNNGG	1 cut(s)	105
BsePI	GCGCGC	1 cut(s)	53
BseRI	GAGGAG	2 cut(s)	242, 380
BseXI	GCAGC	2 cut(s)	133, 460
Bsh1236I	CGCG	2 cut(s)	53, 55
BsiHKAI	GWGCWC	1 cut(s)	402
BsiSI	CCGG	2 cut(s)	6, 37
BslI	CCNNNNNNNGG	1 cut(s)	105
BsmI	GAATGC	1 cut(s)	473
Bsp1286I	GDGCHC	1 cut(s)	402
Bsp143I	GATC	1 cut(s)	31
BspFNI	CGCG	2 cut(s)	53, 55
BspPI	GGATC	1 cut(s)	39
BssHII	GCGCGC	1 cut(s)	53
BssMI	GATC	1 cut(s)	31
BssSI	CACGAG	1 cut(s)	401
Bst2BI	CACGAG	1 cut(s)	401
BstC8I	GCNNGC	1 cut(s)	55
BstF5I	GGATG	2 cut(s)	163, 244
BstFNI	CGCG	2 cut(s)	53, 55
BstHHI	GCGC	3 cut(s)	55, 57, 473
BstKTI	GATC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	1 cut(s)	334
BstSCI	CCNGG	1 cut(s)	5
BstSFI	CTRYAG	1 cut(s)	345
BstUI	CGCG	2 cut(s)	53, 55
BstV1I	GCAGC	2 cut(s)	133, 460
BstV2I	GAAGAC	1 cut(s)	53
BstX2I	RGATCY	1 cut(s)	31
BstXI	CCANNNNNNTGG	1 cut(s)	338
BstYI	RGATCY	1 cut(s)	31
BtsCI	GGATG	2 cut(s)	163, 244
Cac8I	GCNNGC	1 cut(s)	55
CfoI	GCGC	3 cut(s)	55, 57, 473
Cfr13I	GGNCC	1 cut(s)	39
CpoI	CGGWCCG	1 cut(s)	39
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	3 cut(s)	234, 352, 406
CspI	CGGWCCG	1 cut(s)	39
CviAII	CATG	1 cut(s)	463
CviJI	RGCY	5 cut(s)	213, 264, 328, 337, 344
CviKI_1	RGCY	5 cut(s)	213, 264, 328, 337, 344
CviQI	GTAC	3 cut(s)	234, 352, 406
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	39
FaeI	CATG	1 cut(s)	466
FaiI	YATR	6 cut(s)	48, 218, 347, 392, 426, 464
FatI	CATG	1 cut(s)	462
Fnu4HI	GCNGC	2 cut(s)	147, 474
FokI	GGATG	2 cut(s)	150, 251
Fsp4HI	GCNGC	2 cut(s)	147, 474
FspBI	CTAG	1 cut(s)	254
GlaI	GCGC	3 cut(s)	54, 56, 472
GluI	GCNGC	2 cut(s)	147, 474
HapII	CCGG	2 cut(s)	6, 37
HgaI	GACGC	1 cut(s)	59
HhaI	GCGC	3 cut(s)	55, 57, 473
Hin1II	CATG	1 cut(s)	466
Hin6I	GCGC	3 cut(s)	53, 55, 471
HinP1I	GCGC	3 cut(s)	53, 55, 471
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HinfI	GANTC	3 cut(s)	80, 110, 267
HpaI	GTTAAC	1 cut(s)	460
HpaII	CCGG	2 cut(s)	6, 37
HphI	GGTGA	2 cut(s)	274, 284
Hpy166II	GTNNAC	2 cut(s)	421, 460
Hpy188I	TCNGA	3 cut(s)	31, 43, 203
Hpy188III	TCNNGA	3 cut(s)	125, 134, 377
Hpy8I	GTNNAC	2 cut(s)	421, 460
HpyAV	CCTTC	1 cut(s)	290
HpyCH4V	TGCA	4 cut(s)	16, 250, 290, 323
HpyF10VI	GCNNNNNNNGC	1 cut(s)	334
Hsp92II	CATG	1 cut(s)	466
HspAI	GCGC	3 cut(s)	53, 55, 471
KspAI	GTTAAC	1 cut(s)	460
Kzo9I	GATC	1 cut(s)	31
LmnI	GCTCC	1 cut(s)	341
LpnPI	CCDG	3 cut(s)	19, 50, 147
Lsp1109I	GCAGC	2 cut(s)	133, 460
LweI	GCATC	3 cut(s)	259, 277, 392
MaeI	CTAG	1 cut(s)	254
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	4 cut(s)	53, 82, 448, 451
MfeI	CAATTG	1 cut(s)	11
MflI	RGATCY	1 cut(s)	31
MhlI	GDGCHC	1 cut(s)	402
MluCI	AATT	1 cut(s)	11
MlyI	GAGTC	1 cut(s)	276
MnlI	CCTC	6 cut(s)	220, 268, 351, 358, 361, 373
MseI	TTAA	2 cut(s)	171, 459
MspI	CCGG	2 cut(s)	6, 37
MspR9I	CCNGG	1 cut(s)	7
MunI	CAATTG	1 cut(s)	11
Mva1269I	GAATGC	1 cut(s)	473
MvnI	CGCG	2 cut(s)	53, 55
MwoI	GCNNNNNNNGC	1 cut(s)	334
NciI	CCSGG	1 cut(s)	7
NdeII	GATC	1 cut(s)	31
NlaIII	CATG	1 cut(s)	466
NmeAIII	GCCGAG	1 cut(s)	290
PauI	GCGCGC	1 cut(s)	53
PcsI	WCGNNNNNNNCGW	1 cut(s)	92
PctI	GAATGC	1 cut(s)	473
PfeI	GAWTC	2 cut(s)	80, 110
PkrI	GCNGC	2 cut(s)	148, 475
PleI	GAGTC	1 cut(s)	275
PpsI	GAGTC	1 cut(s)	275
PspPI	GGNCC	1 cut(s)	39
PsuI	RGATCY	1 cut(s)	31
PteI	GCGCGC	1 cut(s)	53
RsaI	GTAC	3 cut(s)	235, 353, 407
RsaNI	GTAC	3 cut(s)	234, 352, 406
Rsr2I	CGGWCCG	1 cut(s)	39
RsrII	CGGWCCG	1 cut(s)	39
SaqAI	TTAA	2 cut(s)	171, 459
SatI	GCNGC	2 cut(s)	147, 474
Sau3AI	GATC	1 cut(s)	31
Sau96I	GGNCC	1 cut(s)	39
SchI	GAGTC	1 cut(s)	276
ScrFI	CCNGG	1 cut(s)	7
SduI	GDGCHC	1 cut(s)	402
SetI	ASST	3 cut(s)	120, 279, 346
SfaNI	GCATC	3 cut(s)	259, 277, 392
SfcI	CTRYAG	1 cut(s)	345
SinI	GGWCC	1 cut(s)	39
Sse9I	AATT	1 cut(s)	11
SspMI	CTAG	1 cut(s)	254
StyD4I	CCNGG	1 cut(s)	5
TasI	AATT	1 cut(s)	11
TfiI	GAWTC	2 cut(s)	80, 110
Tru1I	TTAA	2 cut(s)	171, 459
Tru9I	TTAA	2 cut(s)	171, 459
TseI	GCWGC	2 cut(s)	146, 473
TspDTI	ATGAA	2 cut(s)	407, 468
TspGWI	ACGGA	1 cut(s)	251
VpaK11BI	GGWCC	1 cut(s)	39
XspI	CTAG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.