Inner membrane component of T3SS, cytoplasmic domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G38840 |
| fragaria_vesca | FvH4_6g46110 FvH4_6g46110 FvH4_6g46110 FvH4_6g46110 |
| malus_domestica | MD09G1076900.v1.1 |
| prunus_persica | Prupe.3G247200_v2.0.a1 |
| pyrus_communis | pycom09g00410 |
| rosa_chinensis | RchiOBHm_Chr2g0164301 RchiOBHm_Chr2g0164311 RchiOBHm_Chr2g0164441 RchiOBHm_Chr2g0164481 |
| rosa_laevigata | RLG00000021452 RLG00000021462 |
| rosa_multiflora | Rmu_sc0000144.1_g000022 Rmu_sc0002082.1_g000003 Rmu_sc0007154.1_g000011 Rmu_sc0020353.1_g000001 Rmu_sc0024157.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00086560 Rroxscaffold_2G00086640 |
| rosa_rugosa | Rorug02G0508000 Rorug02G0508500 Rorug02G0508700 |
| rosa_samantha | Rh2AG575900 Rh2AG576000 Rh2AG576700 Rh2BG587700 Rh2CG557600 Rh2CG557700 Rh2CG557800 Rh2CG558500 Rh2DG596400 Rh2DG598200 |
| rosa_wichuraiana | Rw2G047780 Rw2G047870 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1780 |
| Acc36I | ACCTGC | 1 cut(s) | 1780 |
| AccB1I | GGYRCC | 1 cut(s) | 2137 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1079 |
| AccI | GTMKAC | 2 cut(s) | 366, 1697 |
| AccII | CGCG | 2 cut(s) | 852, 1060 |
| AcoI | YGGCCR | 2 cut(s) | 60, 391 |
| AcsI | RAATTY | 1 cut(s) | 1136 |
| AcuI | CTGAAG | 3 cut(s) | 440, 1767, 1932 |
| AcyI | GRCGYC | 1 cut(s) | 264 |
| AfaI | GTAC | 3 cut(s) | 278, 502, 861 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 101, 325, 691, 935, 1079, 1476, 2147 |
| AflIII | ACRYGT | 3 cut(s) | 384, 559, 1338 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1820, 1852 |
| Alw21I | GWGCWC | 1 cut(s) | 1794 |
| Alw26I | GTCTC | 3 cut(s) | 602, 1016, 1835 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1298, 1652, 1772 |
| Ama87I | CYCGRG | 2 cut(s) | 323, 2093 |
| AoxI | GGCC | 2 cut(s) | 60, 391 |
| ApoI | RAATTY | 1 cut(s) | 1136 |
| AspLEI | GCGC | 1 cut(s) | 1060 |
| AspS9I | GGNCC | 4 cut(s) | 104, 614, 1952, 2090 |
| AsuC2I | CCSGG | 1 cut(s) | 1872 |
| AsuHPI | GGTGA | 5 cut(s) | 544, 578, 803, 1190, 1472 |
| AvaI | CYCGRG | 2 cut(s) | 323, 2093 |
| AvaII | GGWCC | 4 cut(s) | 104, 614, 1952, 2090 |
| BanI | GGYRCC | 1 cut(s) | 2137 |
| BauI | CACGAG | 1 cut(s) | 1793 |
| BbsI | GAAGAC | 4 cut(s) | 22, 69, 174, 684 |
| Bbv12I | GWGCWC | 1 cut(s) | 1794 |
| BbvCI | CCTCAGC | 1 cut(s) | 780 |
| BccI | CCATC | 5 cut(s) | 625, 731, 1081, 1796, 2156 |
| BceAI | ACGGC | 5 cut(s) | 176, 274, 277, 434, 523 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 206, 240, 1323, 1357 |
| BcnI | CCSGG | 1 cut(s) | 1872 |
| BcoDI | GTCTC | 3 cut(s) | 602, 1016, 1835 |
| BfaI | CTAG | 4 cut(s) | 126, 686, 1361, 2197 |
| BfmI | CTRYAG | 4 cut(s) | 1299, 1317, 1626, 1773 |
| BfuAI | ACCTGC | 1 cut(s) | 1780 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1717 |
| BmcAI | AGTACT | 2 cut(s) | 502, 861 |
| Bme1390I | CCNGG | 1 cut(s) | 1872 |
| Bme18I | GGWCC | 4 cut(s) | 104, 614, 1952, 2090 |
| BmeT110I | CYCGRG | 2 cut(s) | 323, 2093 |
| BmgT120I | GGNCC | 4 cut(s) | 104, 614, 1952, 2090 |
| BmiI | GGNNCC | 4 cut(s) | 105, 106, 2092, 2139 |
| BmrFI | CCNGG | 1 cut(s) | 1872 |
| BpiI | GAAGAC | 4 cut(s) | 22, 69, 174, 684 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 286, 318 |
| BpmI | CTGGAG | 2 cut(s) | 440, 1391 |
| Bpu10I | CCTNAGC | 1 cut(s) | 780 |
| BpuEI | CTTGAG | 3 cut(s) | 317, 915, 930 |
| BpuMI | CCSGG | 1 cut(s) | 1872 |
| BsaAI | YACGTR | 1 cut(s) | 560 |
| BsaHI | GRCGYC | 1 cut(s) | 264 |
| BsaJI | CCNNGG | 5 cut(s) | 12, 290, 610, 1377, 1870 |
| BsaWI | WCCGGW | 1 cut(s) | 634 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1674, 1704 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 101, 325, 691, 935, 1079, 1476, 2147 |
| Bse118I | RCCGGY | 1 cut(s) | 58 |
| Bse1I | ACTGG | 7 cut(s) | 26, 183, 313, 1332, 1408, 1462, 1954 |
| BseDI | CCNNGG | 5 cut(s) | 12, 290, 610, 1377, 1870 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 101, 325, 691, 935, 1079, 1476, 2147 |
| BseMII | CTCAG | 5 cut(s) | 771, 974, 1737, 1947, 2115 |
| BseNI | ACTGG | 7 cut(s) | 26, 183, 313, 1332, 1408, 1462, 1954 |
| BseRI | GAGGAG | 1 cut(s) | 1763 |
| BseX3I | CGGCCG | 1 cut(s) | 60 |
| BsgI | GTGCAG | 1 cut(s) | 318 |
| Bsh1236I | CGCG | 2 cut(s) | 852, 1060 |
| Bsh1285I | CGRYCG | 1 cut(s) | 63 |
| BshFI | GGCC | 2 cut(s) | 62, 393 |
| BshNI | GGYRCC | 1 cut(s) | 2137 |
| BsiEI | CGRYCG | 1 cut(s) | 63 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1794 |
| BsiHKCI | CYCGRG | 2 cut(s) | 323, 2093 |
| BsiSI | CCGG | 4 cut(s) | 59, 63, 635, 1872 |
| BslFI | GGGAC | 4 cut(s) | 90, 171, 251, 2076 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 101, 325, 691, 935, 1079, 1476, 2147 |
| BsmAI | GTCTC | 3 cut(s) | 602, 1016, 1835 |
| BsmBI | CGTCTC | 3 cut(s) | 602, 1016, 1835 |
| BsmFI | GGGAC | 4 cut(s) | 90, 171, 251, 2076 |
| BsnI | GGCC | 2 cut(s) | 62, 393 |
| BsoBI | CYCGRG | 2 cut(s) | 323, 2093 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1794 |
| Bsp143I | GATC | 3 cut(s) | 490, 688, 1230 |
| Bsp19I | CCATGG | 1 cut(s) | 12 |
| BspANI | GGCC | 2 cut(s) | 62, 393 |
| BspCNI | CTCAG | 5 cut(s) | 772, 973, 1738, 1948, 2116 |
| BspFNI | CGCG | 2 cut(s) | 852, 1060 |
| BspHI | TCATGA | 1 cut(s) | 1918 |
| BspLI | GGNNCC | 4 cut(s) | 105, 106, 2092, 2139 |
| BspMAI | CTGCAG | 2 cut(s) | 1321, 1777 |
| BspMI | ACCTGC | 1 cut(s) | 1780 |
| BspT107I | GGYRCC | 1 cut(s) | 2137 |
| BsrFI | RCCGGY | 1 cut(s) | 58 |
| BsrI | ACTGG | 7 cut(s) | 26, 183, 313, 1332, 1408, 1462, 1954 |
| BssAI | RCCGGY | 1 cut(s) | 58 |
| BssECI | CCNNGG | 5 cut(s) | 12, 290, 610, 1377, 1870 |
| BssMI | GATC | 3 cut(s) | 490, 688, 1230 |
| BssNAI | GTATAC | 2 cut(s) | 367, 1698 |
| BssNI | GRCGYC | 1 cut(s) | 264 |
| BssSI | CACGAG | 1 cut(s) | 1793 |
| BssT1I | CCWWGG | 2 cut(s) | 12, 610 |
| Bst1107I | GTATAC | 2 cut(s) | 367, 1698 |
| Bst2BI | CACGAG | 1 cut(s) | 1793 |
| Bst6I | CTCTTC | 3 cut(s) | 1014, 1215, 1242 |
| BstACI | GRCGYC | 1 cut(s) | 264 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 1331, 1498, 1772, 1973 |
| BstBAI | YACGTR | 1 cut(s) | 560 |
| BstDEI | CTNAG | 6 cut(s) | 780, 960, 1356, 1746, 1956, 2124 |
| BstDSI | CCRYGG | 2 cut(s) | 12, 290 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 689, 2145 |
| BstFNI | CGCG | 2 cut(s) | 852, 1060 |
| BstHHI | GCGC | 1 cut(s) | 1060 |
| BstKTI | GATC | 3 cut(s) | 493, 691, 1233 |
| BstMAI | GTCTC | 3 cut(s) | 602, 1016, 1835 |
| BstMBI | GATC | 3 cut(s) | 490, 688, 1230 |
| BstMCI | CGRYCG | 1 cut(s) | 63 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 731, 914, 1322, 1331, 1498, 1717, 1772, 1775, 1973 |
| BstNSI | RCATGY | 2 cut(s) | 388, 1342 |
| BstSCI | CCNGG | 1 cut(s) | 1870 |
| BstSFI | CTRYAG | 4 cut(s) | 1299, 1317, 1626, 1773 |
| BstUI | CGCG | 2 cut(s) | 852, 1060 |
| BstV2I | GAAGAC | 4 cut(s) | 22, 69, 174, 684 |
| BstZ17I | GTATAC | 2 cut(s) | 367, 1698 |
| BstZI | CGGCCG | 1 cut(s) | 60 |
| BsuRI | GGCC | 2 cut(s) | 62, 393 |
| BtgI | CCRYGG | 2 cut(s) | 12, 290 |
| BtgZI | GCGATG | 1 cut(s) | 2175 |
| BtsIMutI | CAGTG | 3 cut(s) | 1325, 1721, 1982 |
| BveI | ACCTGC | 1 cut(s) | 1780 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1298, 1652, 1772 |
| CciI | TCATGA | 1 cut(s) | 1918 |
| CfoI | GCGC | 1 cut(s) | 1060 |
| Cfr10I | RCCGGY | 1 cut(s) | 58 |
| Cfr13I | GGNCC | 4 cut(s) | 104, 614, 1952, 2090 |
| CseI | GACGC | 1 cut(s) | 253 |
| Csp6I | GTAC | 3 cut(s) | 277, 501, 860 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 451, 486 |
| CviQI | GTAC | 3 cut(s) | 277, 501, 860 |
| DdeI | CTNAG | 6 cut(s) | 780, 960, 1356, 1746, 1956, 2124 |
| DpnI | GATC | 3 cut(s) | 492, 690, 1232 |
| DpnII | GATC | 3 cut(s) | 490, 688, 1230 |
| DraI | TTTAAA | 1 cut(s) | 657 |
| EaeI | YGGCCR | 2 cut(s) | 60, 391 |
| EagI | CGGCCG | 1 cut(s) | 60 |
| Eam1104I | CTCTTC | 3 cut(s) | 1014, 1215, 1242 |
| EarI | CTCTTC | 3 cut(s) | 1014, 1215, 1242 |
| EciI | GGCGGA | 3 cut(s) | 12, 123, 276 |
| EclXI | CGGCCG | 1 cut(s) | 60 |
| Eco130I | CCWWGG | 2 cut(s) | 12, 610 |
| Eco47I | GGWCC | 4 cut(s) | 104, 614, 1952, 2090 |
| Eco52I | CGGCCG | 1 cut(s) | 60 |
| Eco57I | CTGAAG | 3 cut(s) | 440, 1767, 1932 |
| Eco88I | CYCGRG | 2 cut(s) | 323, 2093 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 689, 2145 |
| EcoO109I | RGGNCCY | 1 cut(s) | 104 |
| EcoRI | GAATTC | 1 cut(s) | 1136 |
| EcoT14I | CCWWGG | 2 cut(s) | 12, 610 |
| EcoT22I | ATGCAT | 1 cut(s) | 1336 |
| ErhI | CCWWGG | 2 cut(s) | 12, 610 |
| Esp3I | CGTCTC | 3 cut(s) | 602, 1016, 1835 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 687, 719, 714, 746, 1101, 1133, 1248, 1280 |
| FaqI | GGGAC | 4 cut(s) | 90, 171, 251, 2076 |
| FauI | CCCGC | 3 cut(s) | 117, 196, 857 |
| FauNDI | CATATG | 1 cut(s) | 888 |
| FblI | GTMKAC | 2 cut(s) | 366, 1697 |
| FspBI | CTAG | 4 cut(s) | 126, 686, 1361, 2197 |
| GlaI | GCGC | 1 cut(s) | 1059 |
| GsuI | CTGGAG | 2 cut(s) | 440, 1391 |
| HaeIII | GGCC | 2 cut(s) | 62, 393 |
| HapII | CCGG | 4 cut(s) | 59, 63, 635, 1872 |
| HgaI | GACGC | 1 cut(s) | 253 |
| HhaI | GCGC | 1 cut(s) | 1060 |
| Hin1I | GRCGYC | 1 cut(s) | 264 |
| Hin6I | GCGC | 1 cut(s) | 1058 |
| HinP1I | GCGC | 1 cut(s) | 1058 |
| HincII | GTYRAC | 3 cut(s) | 196, 520, 942 |
| HindII | GTYRAC | 3 cut(s) | 196, 520, 942 |
| HindIII | AAGCTT | 2 cut(s) | 650, 723 |
| HpaI | GTTAAC | 2 cut(s) | 196, 520 |
| HpaII | CCGG | 4 cut(s) | 59, 63, 635, 1872 |
| HphI | GGTGA | 5 cut(s) | 544, 578, 803, 1190, 1472 |
| Hpy166II | GTNNAC | 8 cut(s) | 196, 279, 367, 520, 535, 547, 942, 1698 |
| Hpy8I | GTNNAC | 8 cut(s) | 196, 279, 367, 520, 535, 547, 942, 1698 |
| Hpy99I | CGWCG | 2 cut(s) | 73, 76 |
| HpyAV | CCTTC | 7 cut(s) | 1170, 1673, 1791, 1907, 2039, 2112, 2141 |
| HpyCH4IV | ACGT | 6 cut(s) | 68, 549, 559, 1025, 2037, 2132 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 731, 914, 1322, 1331, 1498, 1717, 1772, 1775, 1973 |
| HpyF3I | CTNAG | 6 cut(s) | 780, 960, 1356, 1746, 1956, 2124 |
| HpySE526I | ACGT | 6 cut(s) | 68, 549, 559, 1025, 2037, 2132 |
| Hsp92I | GRCGYC | 1 cut(s) | 264 |
| HspAI | GCGC | 1 cut(s) | 1058 |
| KflI | GGGWCCC | 1 cut(s) | 104 |
| KspAI | GTTAAC | 2 cut(s) | 196, 520 |
| Kzo9I | GATC | 3 cut(s) | 490, 688, 1230 |
| LmnI | GCTCC | 5 cut(s) | 180, 307, 377, 421, 1094 |
| MaeI | CTAG | 4 cut(s) | 126, 686, 1361, 2197 |
| MaeII | ACGT | 6 cut(s) | 68, 549, 559, 1025, 2037, 2132 |
| MaeIII | GTNAC | 4 cut(s) | 799, 1633, 1663, 2192 |
| MalI | GATC | 3 cut(s) | 492, 690, 1232 |
| MboI | GATC | 3 cut(s) | 490, 688, 1230 |
| MhlI | GDGCHC | 1 cut(s) | 1794 |
| MluCI | AATT | 3 cut(s) | 356, 1136, 1259 |
| MlyI | GAGTC | 5 cut(s) | 29, 937, 1199, 1514, 1598 |
| MmeI | TCCRAC | 2 cut(s) | 452, 1398 |
| Mph1103I | ATGCAT | 1 cut(s) | 1336 |
| MseI | TTAA | 6 cut(s) | 195, 519, 656, 864, 1902, 1991 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1923 |
| MspA1I | CMGCKG | 3 cut(s) | 1202, 1538, 1649 |
| MspI | CCGG | 4 cut(s) | 59, 63, 635, 1872 |
| MspR9I | CCNGG | 1 cut(s) | 1872 |
| MvnI | CGCG | 2 cut(s) | 852, 1060 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 731, 914, 1322, 1331, 1498, 1717, 1772, 1775, 1973 |
| NciI | CCSGG | 1 cut(s) | 1872 |
| NcoI | CCATGG | 1 cut(s) | 12 |
| NdeI | CATATG | 1 cut(s) | 888 |
| NdeII | GATC | 3 cut(s) | 490, 688, 1230 |
| NlaIV | GGNNCC | 4 cut(s) | 105, 106, 2092, 2139 |
| NmeAIII | GCCGAG | 1 cut(s) | 1681 |
| NsiI | ATGCAT | 1 cut(s) | 1336 |
| NspI | RCATGY | 2 cut(s) | 388, 1342 |
| PaeR7I | CTCGAG | 1 cut(s) | 323 |
| PagI | TCATGA | 1 cut(s) | 1918 |
| PaqCI | CACCTGC | 1 cut(s) | 1780 |
| PciI | ACATGT | 2 cut(s) | 384, 1338 |
| PcsI | WCGNNNNNNNCGW | 6 cut(s) | 77, 204, 287, 366, 405, 513 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1079 |
| PleI | GAGTC | 5 cut(s) | 29, 937, 1199, 1513, 1598 |
| PpsI | GAGTC | 5 cut(s) | 29, 937, 1199, 1513, 1598 |
| Ppu21I | YACGTR | 1 cut(s) | 560 |
| PpuMI | RGGWCCY | 1 cut(s) | 104 |
| PscI | ACATGT | 2 cut(s) | 384, 1338 |
| Psp5II | RGGWCCY | 1 cut(s) | 104 |
| PspN4I | GGNNCC | 4 cut(s) | 105, 106, 2092, 2139 |
| PspPI | GGNCC | 4 cut(s) | 104, 614, 1952, 2090 |
| PspPPI | RGGWCCY | 1 cut(s) | 104 |
| PspXI | VCTCGAGB | 1 cut(s) | 323 |
| PstI | CTGCAG | 2 cut(s) | 1321, 1777 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1298, 1652, 1772 |
| PvuII | CAGCTG | 1 cut(s) | 1649 |
| RsaI | GTAC | 3 cut(s) | 278, 502, 861 |
| RsaNI | GTAC | 3 cut(s) | 277, 501, 860 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1923 |
| SaqAI | TTAA | 6 cut(s) | 195, 519, 656, 864, 1902, 1991 |
| Sau3AI | GATC | 3 cut(s) | 490, 688, 1230 |
| Sau96I | GGNCC | 4 cut(s) | 104, 614, 1952, 2090 |
| ScaI | AGTACT | 2 cut(s) | 502, 861 |
| SchI | GAGTC | 5 cut(s) | 29, 937, 1199, 1514, 1598 |
| ScrFI | CCNGG | 1 cut(s) | 1872 |
| SduI | GDGCHC | 1 cut(s) | 1794 |
| SfcI | CTRYAG | 4 cut(s) | 1299, 1317, 1626, 1773 |
| Sfr274I | CTCGAG | 1 cut(s) | 323 |
| SinI | GGWCC | 4 cut(s) | 104, 614, 1952, 2090 |
| SlaI | CTCGAG | 1 cut(s) | 323 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1923 |
| SmlI | CTYRAG | 4 cut(s) | 323, 332, 930, 945 |
| SmoI | CTYRAG | 4 cut(s) | 323, 332, 930, 945 |
| Sse9I | AATT | 3 cut(s) | 356, 1136, 1259 |
| SspI | AATATT | 1 cut(s) | 1431 |
| SspMI | CTAG | 4 cut(s) | 126, 686, 1361, 2197 |
| StyD4I | CCNGG | 1 cut(s) | 1870 |
| StyI | CCWWGG | 2 cut(s) | 12, 610 |
| TaiI | ACGT | 6 cut(s) | 71, 552, 562, 1028, 2040, 2135 |
| TaqII | GACCGA | 1 cut(s) | 1161 |
| TasI | AATT | 3 cut(s) | 356, 1136, 1259 |
| TatI | WGTACW | 2 cut(s) | 500, 859 |
| TauI | GCSGC | 2 cut(s) | 253, 1538 |
| Tru1I | TTAA | 6 cut(s) | 195, 519, 656, 864, 1902, 1991 |
| Tru9I | TTAA | 6 cut(s) | 195, 519, 656, 864, 1902, 1991 |
| TscAI | CASTG | 3 cut(s) | 1332, 1721, 1989 |
| TspDTI | ATGAA | 7 cut(s) | 104, 735, 905, 990, 1149, 1951, 2094 |
| TspGWI | ACGGA | 5 cut(s) | 264, 294, 566, 1859, 1900 |
| TspRI | CASTG | 3 cut(s) | 1332, 1721, 1989 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1079 |
| VpaK11BI | GGWCC | 4 cut(s) | 104, 614, 1952, 2090 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 689, 2145 |
| XapI | RAATTY | 1 cut(s) | 1136 |
| XceI | RCATGY | 2 cut(s) | 388, 1342 |
| XhoI | CTCGAG | 1 cut(s) | 323 |
| XmiI | GTMKAC | 2 cut(s) | 366, 1697 |
| XspI | CTAG | 4 cut(s) | 126, 686, 1361, 2197 |
| ZrmI | AGTACT | 2 cut(s) | 502, 861 |
| Zsp2I | ATGCAT | 1 cut(s) | 1336 |