Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003377

Physical Location & Seq

Genomic Coordinates Reverse (-)

73598944 .. 73599494

Gene Structure 551 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG557600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGAGCACGAGTCTGAAGTATTTGTGGACTATAAAGACAGGAAGAAGATTTTGGAGAATGAAGTTAACATGGAATCTGGCTGCGCCTGGTTTGATTATAAGGAAAGGAAAACAAGTTCATGAATCTGAAGCTAGTGATGATTCTCATCAACTGTCGACATCTTCCTCCACAGGAGCTGGACTCCTGGCAGAGGATGCTGTAGCATTGTTGCTAAAGCATAACAGAGGCTATTATGCATCAGAAGATGATAAATCCTCTGAGAGCCAAGATACGTCACAAGGGAAACAACAGAGCAAGGGTAAGAAGCCCAAAAAAGAGTACTTGGTCCGGAGAGATCTTCATTTCTTGATAGTGCATGATTCTACTGAAACATGGGTGCCTCCTGAAGGACAATCTGGTGATGGACGAACATCCTTGAAAGATCGATATGGCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

145

Amino Acids

16.36

Weight (kDa)

9.4

Isoelectric Point (pI)

45.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38840
fragaria_vesca	FvH4_6g46110 FvH4_6g46110 FvH4_6g46110 FvH4_6g46110
malus_domestica	MD09G1076900.v1.1
prunus_persica	Prupe.3G247200_v2.0.a1
pyrus_communis	pycom09g00410
rosa_chinensis	RchiOBHm_Chr2g0164301 RchiOBHm_Chr2g0164311 RchiOBHm_Chr2g0164441 RchiOBHm_Chr2g0164481
rosa_laevigata	RLG00000021452 RLG00000021462
rosa_multiflora	Rmu_sc0000144.1_g000022 Rmu_sc0002082.1_g000003 Rmu_sc0007154.1_g000011 Rmu_sc0020353.1_g000001 Rmu_sc0024157.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086560 Rroxscaffold_2G00086640
rosa_rugosa	Rorug02G0508000 Rorug02G0508500 Rorug02G0508700
rosa_samantha	Rh2AG575900 Rh2AG576000 Rh2AG576700 Rh2BG587700 Rh2CG557600 Rh2CG557700 Rh2CG557800 Rh2CG558500 Rh2DG596400 Rh2DG598200
rosa_wichuraiana	Rw2G047780 Rw2G047870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	98
AccB1I	GGYRCC	1 cut(s)	376
AccI	GTMKAC	1 cut(s)	155
AccIII	TCCGGA	1 cut(s)	327
AcuI	CTGAAG	3 cut(s)	35, 147, 405
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	2 cut(s)	190, 386
AgsI	TTSAA	1 cut(s)	418
AjnI	CCWGG	2 cut(s)	85, 183
AjuI	GAANNNNNNNTTGG	2 cut(s)	34, 66
AloI	GAACNNNNNNTCC	2 cut(s)	99, 131
AluBI	AGCT	2 cut(s)	131, 176
AluI	AGCT	2 cut(s)	131, 176
Alw21I	GWGCWC	1 cut(s)	8
AlwNI	CAGNNNCTG	1 cut(s)	176
Aor13HI	TCCGGA	1 cut(s)	327
ApeKI	GCWGC	1 cut(s)	80
AspLEI	GCGC	1 cut(s)	85
AspS9I	GGNCC	1 cut(s)	325
AsuHPI	GGTGA	1 cut(s)	410
AvaII	GGWCC	1 cut(s)	325
BanI	GGYRCC	1 cut(s)	376
BauI	CACGAG	1 cut(s)	7
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	67
BccI	CCATC	1 cut(s)	395
BciT130I	CCWGG	2 cut(s)	87, 185
BfaI	CTAG	1 cut(s)	132
BfmI	CTRYAG	1 cut(s)	198
BglII	AGATCT	1 cut(s)	334
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
BmcAI	AGTACT	1 cut(s)	320
Bme1390I	CCNGG	2 cut(s)	87, 185
Bme18I	GGWCC	1 cut(s)	325
BmgT120I	GGNCC	1 cut(s)	325
BmiI	GGNNCC	1 cut(s)	378
BmrFI	CCNGG	2 cut(s)	87, 185
BmsI	GCATC	2 cut(s)	184, 245
BplI	GAGNNNNNCTC	2 cut(s)	165, 197
Bsa29I	ATCGAT	1 cut(s)	424
BsaBI	GATNNNNATC	1 cut(s)	144
BsaWI	WCCGGW	1 cut(s)	327
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 386
Bse8I	GATNNNNATC	1 cut(s)	144
BseAI	TCCGGA	1 cut(s)	327
BseBI	CCWGG	2 cut(s)	87, 185
BseCI	ATCGAT	1 cut(s)	424
BseGI	GGATG	2 cut(s)	199, 410
BseJI	GATNNNNATC	1 cut(s)	144
BseLI	CCNNNNNNNGG	2 cut(s)	190, 386
BseMII	CTCAG	1 cut(s)	249
BseXI	GCAGC	1 cut(s)	67
BshNI	GGYRCC	1 cut(s)	376
BshVI	ATCGAT	1 cut(s)	424
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	328
BslI	CCNNNNNNNGG	2 cut(s)	190, 386
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp13I	TCCGGA	1 cut(s)	327
Bsp143I	GATC	2 cut(s)	334, 421
BspCNI	CTCAG	1 cut(s)	250
BspDI	ATCGAT	1 cut(s)	424
BspEI	TCCGGA	1 cut(s)	327
BspHI	TCATGA	1 cut(s)	118
BspLI	GGNNCC	1 cut(s)	378
BspT107I	GGYRCC	1 cut(s)	376
BssMI	GATC	2 cut(s)	334, 421
BssSI	CACGAG	1 cut(s)	7
Bst2BI	CACGAG	1 cut(s)	7
Bst2UI	CCWGG	2 cut(s)	87, 185
Bst4CI	ACNGT	1 cut(s)	153
BstAPI	GCANNNNNTGC	1 cut(s)	194
BstDEI	CTNAG	1 cut(s)	258
BstENI	CCTNNNNNAGG	2 cut(s)	188, 384
BstF5I	GGATG	2 cut(s)	199, 410
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	2 cut(s)	337, 424
BstMBI	GATC	2 cut(s)	334, 421
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstNI	CCWGG	2 cut(s)	87, 185
BstSCI	CCNGG	2 cut(s)	85, 183
BstSFI	CTRYAG	1 cut(s)	198
BstV1I	GCAGC	1 cut(s)	67
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
Bsu15I	ATCGAT	1 cut(s)	424
BsuTUI	ATCGAT	1 cut(s)	424
BtsCI	GGATG	2 cut(s)	199, 410
CaiI	CAGNNNCTG	1 cut(s)	176
CciI	TCATGA	1 cut(s)	118
CfoI	GCGC	1 cut(s)	85
Cfr13I	GGNCC	1 cut(s)	325
ClaI	ATCGAT	1 cut(s)	424
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	4 cut(s)	69, 119, 356, 372
CviJI	RGCY	7 cut(s)	80, 131, 176, 228, 264, 307, 432
CviKI_1	RGCY	7 cut(s)	80, 131, 176, 228, 264, 307, 432
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	2 cut(s)	336, 423
DpnII	GATC	2 cut(s)	334, 421
Eco47I	GGWCC	1 cut(s)	325
Eco57I	CTGAAG	3 cut(s)	35, 147, 405
EcoNI	CCTNNNNNAGG	2 cut(s)	188, 384
EcoRII	CCWGG	2 cut(s)	85, 183
EcoT22I	ATGCAT	1 cut(s)	238
FaeI	CATG	4 cut(s)	72, 122, 359, 375
FaiI	YATR	9 cut(s)	32, 70, 98, 120, 219, 234, 357, 373, 429
FatI	CATG	4 cut(s)	68, 118, 355, 371
FblI	GTMKAC	1 cut(s)	155
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	2 cut(s)	206, 397
Fsp4HI	GCNGC	1 cut(s)	81
FspBI	CTAG	1 cut(s)	132
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	1 cut(s)	81
HapII	CCGG	1 cut(s)	328
HhaI	GCGC	1 cut(s)	85
Hin1II	CATG	4 cut(s)	72, 122, 359, 375
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HincII	GTYRAC	2 cut(s)	66, 156
HindII	GTYRAC	2 cut(s)	66, 156
HinfI	GANTC	6 cut(s)	10, 73, 122, 140, 180, 359
HpaI	GTTAAC	1 cut(s)	66
HpaII	CCGG	1 cut(s)	328
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	3 cut(s)	27, 66, 156
Hpy188I	TCNGA	4 cut(s)	15, 127, 241, 259
Hpy188III	TCNNGA	4 cut(s)	119, 328, 346, 383
Hpy8I	GTNNAC	3 cut(s)	27, 66, 156
HpyAV	CCTTC	1 cut(s)	380
HpyCH4III	ACNGT	1 cut(s)	153
HpyCH4IV	ACGT	1 cut(s)	272
HpyCH4V	TGCA	2 cut(s)	236, 355
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	1 cut(s)	258
HpySE526I	ACGT	1 cut(s)	272
Hsp92II	CATG	4 cut(s)	72, 122, 359, 375
HspAI	GCGC	1 cut(s)	83
Kpn2I	TCCGGA	1 cut(s)	327
KspAI	GTTAAC	1 cut(s)	66
Kzo9I	GATC	2 cut(s)	334, 421
LmnI	GCTCC	1 cut(s)	173
Lsp1109I	GCAGC	1 cut(s)	67
LweI	GCATC	2 cut(s)	184, 245
MaeI	CTAG	1 cut(s)	132
MaeII	ACGT	1 cut(s)	272
MaeIII	GTNAC	1 cut(s)	273
MalI	GATC	2 cut(s)	336, 423
MboI	GATC	2 cut(s)	334, 421
MboII	GAAGA	5 cut(s)	54, 57, 153, 254, 329
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	1 cut(s)	8
MlyI	GAGTC	2 cut(s)	19, 174
MnlI	CCTC	5 cut(s)	175, 184, 218, 265, 390
Mph1103I	ATGCAT	1 cut(s)	238
MroI	TCCGGA	1 cut(s)	327
MseI	TTAA	1 cut(s)	65
MspI	CCGG	1 cut(s)	328
MspR9I	CCNGG	2 cut(s)	87, 185
MvaI	CCWGG	2 cut(s)	87, 185
MwoI	GCNNNNNNNGC	1 cut(s)	194
NdeII	GATC	2 cut(s)	334, 421
NlaIII	CATG	4 cut(s)	72, 122, 359, 375
NlaIV	GGNNCC	1 cut(s)	378
NmuCI	GTSAC	1 cut(s)	273
NsiI	ATGCAT	1 cut(s)	238
PagI	TCATGA	1 cut(s)	118
PfeI	GAWTC	4 cut(s)	73, 122, 140, 359
PkrI	GCNGC	1 cut(s)	82
PleI	GAGTC	2 cut(s)	18, 174
PpsI	GAGTC	2 cut(s)	18, 174
PsiI	TTATAA	1 cut(s)	98
Psp6I	CCWGG	2 cut(s)	85, 183
PspGI	CCWGG	2 cut(s)	85, 183
PspN4I	GGNNCC	1 cut(s)	378
PspPI	GGNCC	1 cut(s)	325
PstNI	CAGNNNCTG	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	334
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
SalI	GTCGAC	1 cut(s)	154
SaqAI	TTAA	1 cut(s)	65
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	2 cut(s)	334, 421
Sau96I	GGNCC	1 cut(s)	325
ScaI	AGTACT	1 cut(s)	320
SchI	GAGTC	2 cut(s)	19, 174
ScrFI	CCNGG	2 cut(s)	87, 185
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	3 cut(s)	133, 178, 275
SfaNI	GCATC	2 cut(s)	184, 245
SfcI	CTRYAG	1 cut(s)	198
SinI	GGWCC	1 cut(s)	325
SspMI	CTAG	1 cut(s)	132
StyD4I	CCNGG	2 cut(s)	85, 183
TaaI	ACNGT	1 cut(s)	153
TaiI	ACGT	1 cut(s)	275
TaqI	TCGA	2 cut(s)	155, 424
TatI	WGTACW	1 cut(s)	318
TfiI	GAWTC	4 cut(s)	73, 122, 140, 359
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TseFI	GTSAC	1 cut(s)	273
TseI	GCWGC	1 cut(s)	80
Tsp45I	GTSAC	1 cut(s)	273
TspDTI	ATGAA	4 cut(s)	74, 107, 135, 329
VpaK11BI	GGWCC	1 cut(s)	325
XagI	CCTNNNNNAGG	2 cut(s)	188, 384
XmiI	GTMKAC	1 cut(s)	155
XspI	CTAG	1 cut(s)	132
ZrmI	AGTACT	1 cut(s)	320
Zsp2I	ATGCAT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.