Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007154.1

Orthogroup ID

OG0003377

Physical Location & Seq

Genomic Coordinates Reverse (-)

31858 .. 33024

Gene Structure 1167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007154.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

atggagaacaagaaggagctgctttcaattgagaaaaacagactggcatcagaaactacagaagacaccgatgctggagacgcactggatgcatacatgtctgggctttcatctaagctagtgcttgatgaaactgagcaattgcaaaaagaactctcagatctccagtccgaatatgacagggcagtcttccttttgaagattgctgattcaacaggtgaagcagccaagaaaagggattcaaaggtgcttcctgaaaatcctgaaacttctgctgctgccatcaagaagcaacatccacttaaaccaaaggaaacctgtctgcctgaaaatccagaaagtggctctataaagaaagaggagagtacagatgtgactgttgcatctagcaagaagccggagtcaggtgaggttctcactgatgcaactgaaggaaaaagtgttgtgtatactgttgcaaagccccagtggcttggagctataacgtacaagaggattgaggagggaagaagattttggagaatgaagttaacatggaatctggctgcgcctggtttgattataaggaaaggaaaacaagttcatgaatctgaagctagtgatgattctcatcaactgtcgacatcttcctccacaggagctggactcctggcagaggatgctgtagcattgttgctaaagcataacagaggctattatgcatcagaagatgataaatcctctgagagccaagatacgtcacaagggaaacaacagagcaagggtaagaagcccaaaaaagagtacttggtccggagagaccttcatttcttgatagtgcatgattctactgaaacatgggtgcctccagaaggacaatctggtgatggacgatatggctactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

294

Amino Acids

32.52

Weight (kDa)

5.57

Isoelectric Point (pI)

52.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38840
fragaria_vesca	FvH4_6g46110 FvH4_6g46110 FvH4_6g46110 FvH4_6g46110
malus_domestica	MD09G1076900.v1.1
prunus_persica	Prupe.3G247200_v2.0.a1
pyrus_communis	pycom09g00410
rosa_chinensis	RchiOBHm_Chr2g0164301 RchiOBHm_Chr2g0164311 RchiOBHm_Chr2g0164441 RchiOBHm_Chr2g0164481
rosa_laevigata	RLG00000021452 RLG00000021462
rosa_multiflora	Rmu_sc0000144.1_g000022 Rmu_sc0002082.1_g000003 Rmu_sc0007154.1_g000011 Rmu_sc0020353.1_g000001 Rmu_sc0024157.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086560 Rroxscaffold_2G00086640
rosa_rugosa	Rorug02G0508000 Rorug02G0508500 Rorug02G0508700
rosa_samantha	Rh2AG575900 Rh2AG576000 Rh2AG576700 Rh2BG587700 Rh2CG557600 Rh2CG557700 Rh2CG557800 Rh2CG558500 Rh2DG596400 Rh2DG598200
rosa_wichuraiana	Rw2G047780 Rw2G047870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	563
AasI	GACNNNNNNGTC	1 cut(s)	185
AccB1I	GGYRCC	1 cut(s)	841
AccB7I	CCANNNNNTGG	1 cut(s)	341
AccI	GTMKAC	2 cut(s)	449, 620
AccIII	TCCGGA	1 cut(s)	792
AcuI	CTGAAG	2 cut(s)	450, 612
AfaI	GTAC	3 cut(s)	367, 488, 785
AfiI	CCNNNNNNNGG	5 cut(s)	234, 341, 404, 655, 851
AflIII	ACRYGT	1 cut(s)	96
AgsI	TTSAA	4 cut(s)	27, 199, 213, 243
AjnI	CCWGG	2 cut(s)	550, 648
AjuI	GAANNNNNNNTTGG	2 cut(s)	499, 531
AloI	GAACNNNNNNTCC	2 cut(s)	564, 596
AluBI	AGCT	5 cut(s)	19, 118, 479, 596, 641
AluI	AGCT	5 cut(s)	19, 118, 479, 596, 641
Alw26I	GTCTC	2 cut(s)	72, 792
AlwNI	CAGNNNCTG	1 cut(s)	641
Aor13HI	TCCGGA	1 cut(s)	792
ApeKI	GCWGC	5 cut(s)	19, 224, 275, 278, 545
AspLEI	GCGC	1 cut(s)	550
AspS9I	GGNCC	1 cut(s)	790
AsuHPI	GGTGA	3 cut(s)	230, 419, 875
AvaII	GGWCC	1 cut(s)	790
BanI	GGYRCC	1 cut(s)	841
BbsI	GAAGAC	2 cut(s)	69, 181
BbvI	GCAGC	5 cut(s)	6, 236, 262, 265, 532
BccI	CCATC	2 cut(s)	290, 860
BciT130I	CCWGG	2 cut(s)	552, 650
BcoDI	GTCTC	2 cut(s)	72, 792
BfaI	CTAG	3 cut(s)	119, 387, 597
BfmI	CTRYAG	2 cut(s)	57, 663
BglI	GCCNNNNNGGC	1 cut(s)	469
BglII	AGATCT	1 cut(s)	160
BisI	GCNGC	5 cut(s)	20, 225, 276, 279, 546
BlsI	GCNGC	5 cut(s)	21, 226, 277, 280, 547
BmcAI	AGTACT	1 cut(s)	785
Bme1390I	CCNGG	2 cut(s)	552, 650
Bme18I	GGWCC	1 cut(s)	790
BmgT120I	GGNCC	1 cut(s)	790
BmiI	GGNNCC	1 cut(s)	843
BmrFI	CCNGG	2 cut(s)	552, 650
BmrI	ACTGGG	1 cut(s)	460
BmsI	GCATC	7 cut(s)	56, 61, 79, 392, 412, 649, 710
BmuI	ACTGGG	1 cut(s)	460
BpiI	GAAGAC	2 cut(s)	69, 181
BplI	GAGNNNNNCTC	2 cut(s)	630, 662
BpmI	CTGGAG	3 cut(s)	96, 149, 831
BsaBI	GATNNNNATC	1 cut(s)	609
BsaI	GGTCTC	1 cut(s)	792
BsaWI	WCCGGW	1 cut(s)	792
Bsc4I	CCNNNNNNNGG	5 cut(s)	234, 341, 404, 655, 851
Bse1I	ACTGG	4 cut(s)	48, 90, 166, 466
Bse8I	GATNNNNATC	1 cut(s)	609
BseAI	TCCGGA	1 cut(s)	792
BseBI	CCWGG	2 cut(s)	552, 650
BseGI	GGATG	3 cut(s)	94, 295, 664
BseJI	GATNNNNATC	1 cut(s)	609
BseLI	CCNNNNNNNGG	5 cut(s)	234, 341, 404, 655, 851
BseMII	CTCAG	3 cut(s)	126, 171, 714
BseNI	ACTGG	4 cut(s)	48, 90, 166, 466
BseRI	GAGGAG	2 cut(s)	374, 515
BseXI	GCAGC	5 cut(s)	6, 236, 262, 265, 532
BshNI	GGYRCC	1 cut(s)	841
BsiSI	CCGG	2 cut(s)	398, 793
BslI	CCNNNNNNNGG	5 cut(s)	234, 341, 404, 655, 851
BsmAI	GTCTC	2 cut(s)	72, 792
BsmBI	CGTCTC	1 cut(s)	72
Bso31I	GGTCTC	1 cut(s)	792
Bsp13I	TCCGGA	1 cut(s)	792
Bsp143I	GATC	1 cut(s)	160
BspCNI	CTCAG	3 cut(s)	127, 170, 715
BspEI	TCCGGA	1 cut(s)	792
BspHI	TCATGA	1 cut(s)	583
BspLI	GGNNCC	1 cut(s)	843
BspT107I	GGYRCC	1 cut(s)	841
BspTNI	GGTCTC	1 cut(s)	792
BsrI	ACTGG	4 cut(s)	48, 90, 166, 466
BssMI	GATC	1 cut(s)	160
BssNAI	GTATAC	1 cut(s)	450
Bst1107I	GTATAC	1 cut(s)	450
Bst2UI	CCWGG	2 cut(s)	552, 650
Bst4CI	ACNGT	3 cut(s)	379, 454, 618
BstAPI	GCANNNNNTGC	2 cut(s)	89, 659
BstDEI	CTNAG	4 cut(s)	114, 135, 157, 723
BstENI	CCTNNNNNAGG	2 cut(s)	653, 849
BstF5I	GGATG	3 cut(s)	94, 295, 664
BstHHI	GCGC	1 cut(s)	550
BstKTI	GATC	1 cut(s)	163
BstMAI	GTCTC	2 cut(s)	72, 792
BstMBI	GATC	1 cut(s)	160
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 89, 469, 659
BstNI	CCWGG	2 cut(s)	552, 650
BstNSI	RCATGY	1 cut(s)	100
BstSCI	CCNGG	2 cut(s)	550, 648
BstSFI	CTRYAG	2 cut(s)	57, 663
BstV1I	GCAGC	5 cut(s)	6, 236, 262, 265, 532
BstV2I	GAAGAC	2 cut(s)	69, 181
BstX2I	RGATCY	1 cut(s)	160
BstXI	CCANNNNNNTGG	1 cut(s)	473
BstYI	RGATCY	1 cut(s)	160
BstZ17I	GTATAC	1 cut(s)	450
BtsCI	GGATG	3 cut(s)	94, 295, 664
BtsIMutI	CAGTG	3 cut(s)	83, 417, 473
CaiI	CAGNNNCTG	1 cut(s)	641
CciI	TCATGA	1 cut(s)	583
CfoI	GCGC	1 cut(s)	550
Cfr13I	GGNCC	1 cut(s)	790
CseI	GACGC	1 cut(s)	89
Csp6I	GTAC	3 cut(s)	366, 487, 784
CviAII	CATG	5 cut(s)	97, 534, 584, 821, 837
CviQI	GTAC	3 cut(s)	366, 487, 784
DdeI	CTNAG	4 cut(s)	114, 135, 157, 723
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
DrdI	GACNNNNNNGTC	1 cut(s)	185
DseDI	GACNNNNNNGTC	1 cut(s)	185
Eco31I	GGTCTC	1 cut(s)	792
Eco47I	GGWCC	1 cut(s)	790
Eco57I	CTGAAG	2 cut(s)	450, 612
EcoNI	CCTNNNNNAGG	2 cut(s)	653, 849
EcoRII	CCWGG	2 cut(s)	550, 648
EcoT22I	ATGCAT	2 cut(s)	94, 703
Esp3I	CGTCTC	1 cut(s)	72
FaeI	CATG	5 cut(s)	100, 537, 587, 824, 840
FatI	CATG	5 cut(s)	96, 533, 583, 820, 836
FblI	GTMKAC	2 cut(s)	449, 620
Fnu4HI	GCNGC	5 cut(s)	20, 225, 276, 279, 546
FokI	GGATG	3 cut(s)	101, 282, 671
Fsp4HI	GCNGC	5 cut(s)	20, 225, 276, 279, 546
FspBI	CTAG	3 cut(s)	119, 387, 597
GlaI	GCGC	1 cut(s)	549
GluI	GCNGC	5 cut(s)	20, 225, 276, 279, 546
GsuI	CTGGAG	3 cut(s)	96, 149, 831
HapII	CCGG	2 cut(s)	398, 793
HgaI	GACGC	1 cut(s)	89
HhaI	GCGC	1 cut(s)	550
Hin1II	CATG	5 cut(s)	100, 537, 587, 824, 840
Hin6I	GCGC	1 cut(s)	548
HinP1I	GCGC	1 cut(s)	548
HincII	GTYRAC	2 cut(s)	531, 621
HindII	GTYRAC	2 cut(s)	531, 621
HinfI	GANTC	8 cut(s)	209, 239, 401, 538, 587, 605, 645, 824
HpaI	GTTAAC	1 cut(s)	531
HpaII	CCGG	2 cut(s)	398, 793
HphI	GGTGA	3 cut(s)	230, 419, 875
Hpy166II	GTNNAC	3 cut(s)	450, 531, 621
Hpy188I	TCNGA	6 cut(s)	52, 160, 172, 592, 706, 724
Hpy188III	TCNNGA	8 cut(s)	254, 263, 286, 335, 584, 793, 811, 848
Hpy8I	GTNNAC	3 cut(s)	450, 531, 621
HpyAV	CCTTC	4 cut(s)	7, 425, 812, 845
HpyCH4III	ACNGT	3 cut(s)	379, 454, 618
HpyCH4IV	ACGT	2 cut(s)	485, 737
HpyCH4V	TGCA	7 cut(s)	92, 145, 383, 425, 458, 701, 820
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 89, 469, 659
HpyF3I	CTNAG	4 cut(s)	114, 135, 157, 723
HpySE526I	ACGT	2 cut(s)	485, 737
Hsp92II	CATG	5 cut(s)	100, 537, 587, 824, 840
HspAI	GCGC	1 cut(s)	548
Kpn2I	TCCGGA	1 cut(s)	792
KspAI	GTTAAC	1 cut(s)	531
Kzo9I	GATC	1 cut(s)	160
LmnI	GCTCC	3 cut(s)	16, 476, 638
Lsp1109I	GCAGC	5 cut(s)	6, 236, 262, 265, 532
LweI	GCATC	7 cut(s)	56, 61, 79, 392, 412, 649, 710
MaeI	CTAG	3 cut(s)	119, 387, 597
MaeII	ACGT	2 cut(s)	485, 737
MaeIII	GTNAC	2 cut(s)	373, 738
MalI	GATC	1 cut(s)	162
MboI	GATC	1 cut(s)	160
MboII	GAAGA	7 cut(s)	74, 181, 211, 519, 522, 618, 719
MfeI	CAATTG	2 cut(s)	27, 140
MflI	RGATCY	1 cut(s)	160
MluCI	AATT	2 cut(s)	27, 140
MlyI	GAGTC	2 cut(s)	410, 639
Mph1103I	ATGCAT	2 cut(s)	94, 703
MroI	TCCGGA	1 cut(s)	792
MseI	TTAA	2 cut(s)	303, 530
MspI	CCGG	2 cut(s)	398, 793
MspR9I	CCNGG	2 cut(s)	552, 650
MunI	CAATTG	2 cut(s)	27, 140
MvaI	CCWGG	2 cut(s)	552, 650
MwoI	GCNNNNNNNGC	4 cut(s)	80, 89, 469, 659
NdeII	GATC	1 cut(s)	160
NlaIII	CATG	5 cut(s)	100, 537, 587, 824, 840
NlaIV	GGNNCC	1 cut(s)	843
NmuCI	GTSAC	2 cut(s)	373, 738
NsiI	ATGCAT	2 cut(s)	94, 703
NspI	RCATGY	1 cut(s)	100
PagI	TCATGA	1 cut(s)	583
PciI	ACATGT	1 cut(s)	96
PfeI	GAWTC	6 cut(s)	209, 239, 538, 587, 605, 824
PflMI	CCANNNNNTGG	1 cut(s)	341
PkrI	GCNGC	5 cut(s)	21, 226, 277, 280, 547
PleI	GAGTC	2 cut(s)	409, 639
PpsI	GAGTC	2 cut(s)	409, 639
PscI	ACATGT	1 cut(s)	96
PsiI	TTATAA	1 cut(s)	563
Psp6I	CCWGG	2 cut(s)	550, 648
PspGI	CCWGG	2 cut(s)	550, 648
PspN4I	GGNNCC	1 cut(s)	843
PspPI	GGNCC	1 cut(s)	790
PstNI	CAGNNNCTG	1 cut(s)	641
PsuI	RGATCY	1 cut(s)	160
RsaI	GTAC	3 cut(s)	367, 488, 785
RsaNI	GTAC	3 cut(s)	366, 487, 784
SalI	GTCGAC	1 cut(s)	619
SaqAI	TTAA	2 cut(s)	303, 530
SatI	GCNGC	5 cut(s)	20, 225, 276, 279, 546
Sau3AI	GATC	1 cut(s)	160
Sau96I	GGNCC	1 cut(s)	790
ScaI	AGTACT	1 cut(s)	785
SchI	GAGTC	2 cut(s)	410, 639
ScrFI	CCNGG	2 cut(s)	552, 650
SfaNI	GCATC	7 cut(s)	56, 61, 79, 392, 412, 649, 710
SfcI	CTRYAG	2 cut(s)	57, 663
SinI	GGWCC	1 cut(s)	790
Sse9I	AATT	2 cut(s)	27, 140
SspMI	CTAG	3 cut(s)	119, 387, 597
StyD4I	CCNGG	2 cut(s)	550, 648
TaaI	ACNGT	3 cut(s)	379, 454, 618
TaiI	ACGT	2 cut(s)	488, 740
TaqI	TCGA	1 cut(s)	620
TasI	AATT	2 cut(s)	27, 140
TatI	WGTACW	2 cut(s)	365, 783
TfiI	GAWTC	6 cut(s)	209, 239, 538, 587, 605, 824
Tru1I	TTAA	2 cut(s)	303, 530
Tru9I	TTAA	2 cut(s)	303, 530
TscAI	CASTG	3 cut(s)	90, 424, 473
TseFI	GTSAC	2 cut(s)	373, 738
TseI	GCWGC	5 cut(s)	19, 224, 275, 278, 545
Tsp45I	GTSAC	2 cut(s)	373, 738
TspDTI	ATGAA	6 cut(s)	99, 144, 539, 572, 600, 794
TspRI	CASTG	3 cut(s)	90, 424, 473
Van91I	CCANNNNNTGG	1 cut(s)	341
VpaK11BI	GGWCC	1 cut(s)	790
XagI	CCTNNNNNAGG	2 cut(s)	653, 849
XceI	RCATGY	1 cut(s)	100
XmiI	GTMKAC	2 cut(s)	449, 620
XspI	CTAG	3 cut(s)	119, 387, 597
ZrmI	AGTACT	1 cut(s)	785
Zsp2I	ATGCAT	2 cut(s)	94, 703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.