Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003377

Physical Location & Seq

Genomic Coordinates Reverse (-)

73612617 .. 73614055

Gene Structure 1439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG557800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAAAAAAGAACAGAACAGATTCTGGAAGAGCTTGAAATTTGGAAGAGACGGTGCACGTGTAGGGAAGCAATCTCATGGTAAGAATAAAGGAGCAATTGAAGAAGAAGAAGAGCTTTTGAGATCGGCATCAGAAACTACAGAAGACACTGATGCTGGAGACGCACTGGATGAATACATGTCTGGGGTTTCATCCAAGCTAGTGCTTGATAAAACTGAGCAATTGCCAAAGGAACTCTCAGATCTCCAGTCCGAATATGACAGGGCAGTCTTCCTTTTGAAGATTGCTGATTCAACAGGTGAAGCAGCCAAGAAAAGGGATTCAAAGGTGCTTCCTGAAACTTCTGCTGCTGCCATCAAGAAGCAACATCCACTTAAACCAAAGGAAACCTGCCCACCTGAAAATCCAGAAAGTGGCTCTATAAAGAAAGAGGAGAGTACAGATGCGACTGTTGCATCTAGCAAGAAGCCGGAGTCAGGTGAGGTTCTCACTGATGCAACTGAAGGAAAAAGTGATGTGTATACTGTTGCAAAGCCCCAGTGGCTTGGAGCTATAGCGTACAAGAGGATTGAGGAGGGTCATCAAGAGGCAGCATCTACGAATGAGCACAAGTCTGAAGTATTTGTGGACTATAAAGACAGGAAGAAGATTTTGGAGAATGAAGTTAACATGGAATCTGGCTGCGCCTGGTTTGATTATAAGGAAAGGAAAACAAGTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

240

Amino Acids

26.71

Weight (kDa)

5.4

Isoelectric Point (pI)

51.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38840
fragaria_vesca	FvH4_6g46110 FvH4_6g46110 FvH4_6g46110 FvH4_6g46110
malus_domestica	MD09G1076900.v1.1
prunus_persica	Prupe.3G247200_v2.0.a1
pyrus_communis	pycom09g00410
rosa_chinensis	RchiOBHm_Chr2g0164301 RchiOBHm_Chr2g0164311 RchiOBHm_Chr2g0164441 RchiOBHm_Chr2g0164481
rosa_laevigata	RLG00000021452 RLG00000021462
rosa_multiflora	Rmu_sc0000144.1_g000022 Rmu_sc0002082.1_g000003 Rmu_sc0007154.1_g000011 Rmu_sc0020353.1_g000001 Rmu_sc0024157.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086560 Rroxscaffold_2G00086640
rosa_rugosa	Rorug02G0508000 Rorug02G0508500 Rorug02G0508700
rosa_samantha	Rh2AG575900 Rh2AG576000 Rh2AG576700 Rh2BG587700 Rh2CG557600 Rh2CG557700 Rh2CG557800 Rh2CG558500 Rh2DG596400 Rh2DG598200
rosa_wichuraiana	Rw2G047780 Rw2G047870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	699
AasI	GACNNNNNNGTC	1 cut(s)	266
Acc36I	ACCTGC	1 cut(s)	398
AccB7I	CCANNNNNTGG	1 cut(s)	413
AccI	GTMKAC	1 cut(s)	521
AcsI	RAATTY	1 cut(s)	38
AcuI	CTGAAG	2 cut(s)	522, 636
AcvI	CACGTG	1 cut(s)	59
AfaI	GTAC	2 cut(s)	439, 560
AfiI	CCNNNNNNNGG	3 cut(s)	315, 413, 476
AflIII	ACRYGT	2 cut(s)	58, 177
AgsI	TTSAA	5 cut(s)	37, 101, 280, 294, 324
AjnI	CCWGG	1 cut(s)	686
AjuI	GAANNNNNNNTTGG	2 cut(s)	635, 667
AloI	GAACNNNNNNTCC	1 cut(s)	700
AluBI	AGCT	4 cut(s)	33, 115, 199, 551
AluI	AGCT	4 cut(s)	33, 115, 199, 551
Alw21I	GWGCWC	2 cut(s)	58, 609
Alw26I	GTCTC	2 cut(s)	42, 153
Alw44I	GTGCAC	1 cut(s)	54
AlwNI	CAGNNNCTG	1 cut(s)	24
ApaLI	GTGCAC	1 cut(s)	54
ApeKI	GCWGC	5 cut(s)	305, 347, 350, 590, 681
ApoI	RAATTY	1 cut(s)	38
Asp700I	GAANNNNTTC	1 cut(s)	20
AspLEI	GCGC	1 cut(s)	686
AsuHPI	GGTGA	2 cut(s)	311, 491
BaeGI	GKGCMC	1 cut(s)	58
BbrPI	CACGTG	1 cut(s)	59
BbsI	GAAGAC	2 cut(s)	150, 262
Bbv12I	GWGCWC	2 cut(s)	58, 609
BbvI	GCAGC	5 cut(s)	317, 334, 337, 602, 668
BccI	CCATC	1 cut(s)	362
BciT130I	CCWGG	1 cut(s)	688
BcoDI	GTCTC	2 cut(s)	42, 153
BfaI	CTAG	2 cut(s)	200, 459
BfmI	CTRYAG	2 cut(s)	138, 552
BfuAI	ACCTGC	1 cut(s)	398
BglI	GCCNNNNNGGC	1 cut(s)	541
BglII	AGATCT	1 cut(s)	241
BisI	GCNGC	5 cut(s)	306, 348, 351, 591, 682
BlsI	GCNGC	5 cut(s)	307, 349, 352, 592, 683
Bme1390I	CCNGG	1 cut(s)	688
BmrFI	CCNGG	1 cut(s)	688
BmrI	ACTGGG	1 cut(s)	532
BmsI	GCATC	6 cut(s)	137, 142, 433, 464, 484, 602
BmuI	ACTGGG	1 cut(s)	532
BpiI	GAAGAC	2 cut(s)	150, 262
BpmI	CTGGAG	2 cut(s)	177, 230
BsaAI	YACGTR	1 cut(s)	59
BsaBI	GATNNNNATC	1 cut(s)	127
Bsc4I	CCNNNNNNNGG	3 cut(s)	315, 413, 476
Bse1I	ACTGG	3 cut(s)	171, 247, 538
Bse8I	GATNNNNATC	1 cut(s)	127
BseBI	CCWGG	1 cut(s)	688
BseGI	GGATG	3 cut(s)	175, 191, 367
BseJI	GATNNNNATC	1 cut(s)	127
BseLI	CCNNNNNNNGG	3 cut(s)	315, 413, 476
BseMII	CTCAG	2 cut(s)	207, 252
BseNI	ACTGG	3 cut(s)	171, 247, 538
BseRI	GAGGAG	2 cut(s)	446, 587
BseSI	GKGCMC	1 cut(s)	58
BseXI	GCAGC	5 cut(s)	317, 334, 337, 602, 668
BsiHKAI	GWGCWC	2 cut(s)	58, 609
BsiSI	CCGG	1 cut(s)	470
BslI	CCNNNNNNNGG	3 cut(s)	315, 413, 476
BsmAI	GTCTC	2 cut(s)	42, 153
BsmBI	CGTCTC	2 cut(s)	42, 153
Bsp1286I	GDGCHC	2 cut(s)	58, 609
Bsp143I	GATC	2 cut(s)	122, 241
BspCNI	CTCAG	2 cut(s)	208, 251
BspHI	TCATGA	1 cut(s)	719
BspMI	ACCTGC	1 cut(s)	398
BspQI	GCTCTTC	2 cut(s)	23, 105
BsrI	ACTGG	3 cut(s)	171, 247, 538
BssMI	GATC	2 cut(s)	122, 241
BssNAI	GTATAC	1 cut(s)	522
Bst1107I	GTATAC	1 cut(s)	522
Bst2UI	CCWGG	1 cut(s)	688
Bst4CI	ACNGT	3 cut(s)	53, 451, 526
Bst6I	CTCTTC	3 cut(s)	23, 40, 105
BstBAI	YACGTR	1 cut(s)	59
BstDEI	CTNAG	2 cut(s)	216, 238
BstF5I	GGATG	3 cut(s)	175, 191, 367
BstHHI	GCGC	1 cut(s)	686
BstKTI	GATC	2 cut(s)	125, 244
BstMAI	GTCTC	2 cut(s)	42, 153
BstMBI	GATC	2 cut(s)	122, 241
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 452, 541
BstNI	CCWGG	1 cut(s)	688
BstNSI	RCATGY	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	686
BstSFI	CTRYAG	2 cut(s)	138, 552
BstSLI	GKGCMC	1 cut(s)	58
BstV1I	GCAGC	5 cut(s)	317, 334, 337, 602, 668
BstV2I	GAAGAC	2 cut(s)	150, 262
BstX2I	RGATCY	1 cut(s)	241
BstXI	CCANNNNNNTGG	1 cut(s)	545
BstYI	RGATCY	1 cut(s)	241
BstZ17I	GTATAC	1 cut(s)	522
BtsCI	GGATG	3 cut(s)	175, 191, 367
BtsIMutI	CAGTG	4 cut(s)	147, 164, 489, 545
BveI	ACCTGC	1 cut(s)	398
CaiI	CAGNNNCTG	1 cut(s)	24
CciI	TCATGA	1 cut(s)	719
CfoI	GCGC	1 cut(s)	686
CseI	GACGC	1 cut(s)	170
Csp6I	GTAC	2 cut(s)	438, 559
CviAII	CATG	4 cut(s)	77, 178, 670, 720
CviQI	GTAC	2 cut(s)	438, 559
DdeI	CTNAG	2 cut(s)	216, 238
DpnI	GATC	2 cut(s)	124, 243
DpnII	GATC	2 cut(s)	122, 241
DrdI	GACNNNNNNGTC	1 cut(s)	266
DseDI	GACNNNNNNGTC	1 cut(s)	266
Eam1104I	CTCTTC	3 cut(s)	23, 40, 105
EarI	CTCTTC	3 cut(s)	23, 40, 105
Eco57I	CTGAAG	2 cut(s)	522, 636
Eco72I	CACGTG	1 cut(s)	59
EcoRII	CCWGG	1 cut(s)	686
Esp3I	CGTCTC	2 cut(s)	42, 153
FaeI	CATG	4 cut(s)	80, 181, 673, 723
FalI	AAGNNNNNCTT	2 cut(s)	99, 131
FatI	CATG	4 cut(s)	76, 177, 669, 719
FblI	GTMKAC	1 cut(s)	521
Fnu4HI	GCNGC	5 cut(s)	306, 348, 351, 591, 682
FokI	GGATG	3 cut(s)	178, 182, 354
Fsp4HI	GCNGC	5 cut(s)	306, 348, 351, 591, 682
FspBI	CTAG	2 cut(s)	200, 459
GlaI	GCGC	1 cut(s)	685
GluI	GCNGC	5 cut(s)	306, 348, 351, 591, 682
GsuI	CTGGAG	2 cut(s)	177, 230
HapII	CCGG	1 cut(s)	470
HgaI	GACGC	1 cut(s)	170
HhaI	GCGC	1 cut(s)	686
Hin1II	CATG	4 cut(s)	80, 181, 673, 723
Hin6I	GCGC	1 cut(s)	684
HinP1I	GCGC	1 cut(s)	684
HincII	GTYRAC	1 cut(s)	667
HindII	GTYRAC	1 cut(s)	667
HinfI	GANTC	5 cut(s)	21, 290, 320, 473, 674
HpaI	GTTAAC	1 cut(s)	667
HpaII	CCGG	1 cut(s)	470
HphI	GGTGA	2 cut(s)	311, 491
Hpy166II	GTNNAC	4 cut(s)	56, 522, 628, 667
Hpy188I	TCNGA	4 cut(s)	133, 241, 253, 616
Hpy188III	TCNNGA	6 cut(s)	25, 335, 358, 407, 584, 720
Hpy8I	GTNNAC	4 cut(s)	56, 522, 628, 667
HpyAV	CCTTC	1 cut(s)	497
HpyCH4III	ACNGT	3 cut(s)	53, 451, 526
HpyCH4IV	ACGT	1 cut(s)	58
HpyCH4V	TGCA	4 cut(s)	56, 455, 497, 530
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 452, 541
HpyF3I	CTNAG	2 cut(s)	216, 238
HpySE526I	ACGT	1 cut(s)	58
Hsp92II	CATG	4 cut(s)	80, 181, 673, 723
HspAI	GCGC	1 cut(s)	684
KspAI	GTTAAC	1 cut(s)	667
Kzo9I	GATC	2 cut(s)	122, 241
LguI	GCTCTTC	2 cut(s)	23, 105
LmnI	GCTCC	2 cut(s)	92, 548
Lsp1109I	GCAGC	5 cut(s)	317, 334, 337, 602, 668
LweI	GCATC	6 cut(s)	137, 142, 433, 464, 484, 602
MaeI	CTAG	2 cut(s)	200, 459
MaeII	ACGT	1 cut(s)	58
MalI	GATC	2 cut(s)	124, 243
MboI	GATC	2 cut(s)	122, 241
MfeI	CAATTG	2 cut(s)	96, 221
MflI	RGATCY	1 cut(s)	241
MhlI	GDGCHC	2 cut(s)	58, 609
MluCI	AATT	3 cut(s)	38, 96, 221
MlyI	GAGTC	1 cut(s)	482
MnlI	CCTC	6 cut(s)	424, 475, 558, 565, 568, 580
MroXI	GAANNNNTTC	1 cut(s)	20
MseI	TTAA	2 cut(s)	375, 666
MspI	CCGG	1 cut(s)	470
MspR9I	CCNGG	1 cut(s)	688
MunI	CAATTG	2 cut(s)	96, 221
MvaI	CCWGG	1 cut(s)	688
MwoI	GCNNNNNNNGC	3 cut(s)	161, 452, 541
NdeII	GATC	2 cut(s)	122, 241
NlaIII	CATG	4 cut(s)	80, 181, 673, 723
NspI	RCATGY	1 cut(s)	181
PagI	TCATGA	1 cut(s)	719
PciI	ACATGT	1 cut(s)	177
PciSI	GCTCTTC	2 cut(s)	23, 105
PdmI	GAANNNNTTC	1 cut(s)	20
PfeI	GAWTC	4 cut(s)	21, 290, 320, 674
PflMI	CCANNNNNTGG	1 cut(s)	413
PkrI	GCNGC	5 cut(s)	307, 349, 352, 592, 683
PleI	GAGTC	1 cut(s)	481
PmaCI	CACGTG	1 cut(s)	59
PmlI	CACGTG	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	481
Ppu21I	YACGTR	1 cut(s)	59
PscI	ACATGT	1 cut(s)	177
PsiI	TTATAA	1 cut(s)	699
Psp6I	CCWGG	1 cut(s)	686
PspCI	CACGTG	1 cut(s)	59
PspGI	CCWGG	1 cut(s)	686
PstNI	CAGNNNCTG	1 cut(s)	24
PsuI	RGATCY	1 cut(s)	241
RsaI	GTAC	2 cut(s)	439, 560
RsaNI	GTAC	2 cut(s)	438, 559
SapI	GCTCTTC	2 cut(s)	23, 105
SaqAI	TTAA	2 cut(s)	375, 666
SatI	GCNGC	5 cut(s)	306, 348, 351, 591, 682
Sau3AI	GATC	2 cut(s)	122, 241
SchI	GAGTC	1 cut(s)	482
ScrFI	CCNGG	1 cut(s)	688
SduI	GDGCHC	2 cut(s)	58, 609
SfaNI	GCATC	6 cut(s)	137, 142, 433, 464, 484, 602
SfcI	CTRYAG	2 cut(s)	138, 552
Sse9I	AATT	3 cut(s)	38, 96, 221
SspMI	CTAG	2 cut(s)	200, 459
StyD4I	CCNGG	1 cut(s)	686
TaaI	ACNGT	3 cut(s)	53, 451, 526
TaiI	ACGT	1 cut(s)	61
TasI	AATT	3 cut(s)	38, 96, 221
TatI	WGTACW	1 cut(s)	437
TfiI	GAWTC	4 cut(s)	21, 290, 320, 674
Tru1I	TTAA	2 cut(s)	375, 666
Tru9I	TTAA	2 cut(s)	375, 666
TscAI	CASTG	4 cut(s)	154, 171, 496, 545
TseI	GCWGC	5 cut(s)	305, 347, 350, 590, 681
TspDTI	ATGAA	5 cut(s)	17, 180, 186, 675, 708
TspRI	CASTG	4 cut(s)	154, 171, 496, 545
Van91I	CCANNNNNTGG	1 cut(s)	413
VneI	GTGCAC	1 cut(s)	54
XapI	RAATTY	1 cut(s)	38
XceI	RCATGY	1 cut(s)	181
XmiI	GTMKAC	1 cut(s)	521
XmnI	GAANNNNTTC	1 cut(s)	20
XspI	CTAG	2 cut(s)	200, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.