Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003377

Physical Location & Seq

Genomic Coordinates Reverse (-)

75064260 .. 75069651

Gene Structure 5392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G047780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGCGTTTGAAGCTGTCACTGATTGCTGGGGACCTAGGGGTCATTACGAGGATATCCAAGAAAGTGCAATTCCGGAAGGCTACTGATGCAAGGATAATGACCAACAAATGCGATGGTTTTTTGCTTCGCGACTCTGGTGAAGCAGCCAAGAAAAGGGATTCAAAGGTGCTTCCTGAAAATCCTGAAACTTCTGCTGCTGCCATCAAGAAGCAACATCCACTTAAACCAAAGGAAACCTGTCTGCCTGAAAATCCAGAAAGTGGCTCTACAAAGAAAGAGGAGAGTACAGATGTGACTGTTGCATCTAGCAAGAAGCCGGAGTCAGGTGAGGTTCTCACTGATGCAACTGAAGGAAAAAGTGTTGTGTATACTGTTGCAAAGCCCCAGTGGCTTGGAGCTATAGCGTACAAGAGGATTGAGGAGGGTCATCAAGAGGCAGCATCTATGAATGAGCACGAGTCTGAGGTATTTGTGGACTATAAAGACAGGAAGAAGATTTTGGAGAATGAAGTTAACATGGAATCTGGCTGCGCCTGGTTTGATTATAAGGAAAGGAAAACAAGTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

189

Amino Acids

21.05

Weight (kDa)

8.31

Isoelectric Point (pI)

35.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38840
fragaria_vesca	FvH4_6g46110 FvH4_6g46110 FvH4_6g46110 FvH4_6g46110
malus_domestica	MD09G1076900.v1.1
prunus_persica	Prupe.3G247200_v2.0.a1
pyrus_communis	pycom09g00410
rosa_chinensis	RchiOBHm_Chr2g0164301 RchiOBHm_Chr2g0164311 RchiOBHm_Chr2g0164441 RchiOBHm_Chr2g0164481
rosa_laevigata	RLG00000021452 RLG00000021462
rosa_multiflora	Rmu_sc0000144.1_g000022 Rmu_sc0002082.1_g000003 Rmu_sc0007154.1_g000011 Rmu_sc0020353.1_g000001 Rmu_sc0024157.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086560 Rroxscaffold_2G00086640
rosa_rugosa	Rorug02G0508000 Rorug02G0508500 Rorug02G0508700
rosa_samantha	Rh2AG575900 Rh2AG576000 Rh2AG576700 Rh2BG587700 Rh2CG557600 Rh2CG557700 Rh2CG557800 Rh2CG558500 Rh2DG596400 Rh2DG598200
rosa_wichuraiana	Rw2G047780 Rw2G047870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	546
AasI	GACNNNNNNGTC	1 cut(s)	38
AccB7I	CCANNNNNTGG	1 cut(s)	260
AccI	GTMKAC	1 cut(s)	368
AccII	CGCG	1 cut(s)	129
AccIII	TCCGGA	1 cut(s)	72
AcuI	CTGAAG	1 cut(s)	369
AfaI	GTAC	2 cut(s)	286, 407
AfiI	CCNNNNNNNGG	3 cut(s)	153, 260, 323
AgsI	TTSAA	2 cut(s)	10, 162
AjnI	CCWGG	1 cut(s)	533
AjuI	GAANNNNNNNTTGG	2 cut(s)	482, 514
AloI	GAACNNNNNNTCC	1 cut(s)	547
AluBI	AGCT	2 cut(s)	13, 398
AluI	AGCT	2 cut(s)	13, 398
Alw21I	GWGCWC	1 cut(s)	456
Aor13HI	TCCGGA	1 cut(s)	72
ApeKI	GCWGC	5 cut(s)	143, 194, 197, 437, 528
AspA2I	CCTAGG	1 cut(s)	34
AspLEI	GCGC	1 cut(s)	533
AspS9I	GGNCC	1 cut(s)	31
AsuHPI	GGTGA	2 cut(s)	149, 338
AvaII	GGWCC	1 cut(s)	31
AvrII	CCTAGG	1 cut(s)	34
BauI	CACGAG	1 cut(s)	455
Bbv12I	GWGCWC	1 cut(s)	456
BbvI	GCAGC	5 cut(s)	155, 181, 184, 449, 515
BccI	CCATC	2 cut(s)	107, 209
BciT130I	CCWGG	1 cut(s)	535
BfaI	CTAG	2 cut(s)	35, 306
BfmI	CTRYAG	1 cut(s)	399
BglI	GCCNNNNNGGC	1 cut(s)	388
BisI	GCNGC	5 cut(s)	144, 195, 198, 438, 529
BlnI	CCTAGG	1 cut(s)	34
BlsI	GCNGC	5 cut(s)	145, 196, 199, 439, 530
Bme1390I	CCNGG	1 cut(s)	535
Bme18I	GGWCC	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	31
BmiI	GGNNCC	1 cut(s)	32
BmrFI	CCNGG	1 cut(s)	535
BmrI	ACTGGG	1 cut(s)	379
BmsI	GCATC	4 cut(s)	76, 311, 331, 449
BmuI	ACTGGG	1 cut(s)	379
BsaJI	CCNNGG	1 cut(s)	34
BsaWI	WCCGGW	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	3 cut(s)	153, 260, 323
Bse1I	ACTGG	1 cut(s)	385
BseAI	TCCGGA	1 cut(s)	72
BseBI	CCWGG	1 cut(s)	535
BseDI	CCNNGG	1 cut(s)	34
BseGI	GGATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	3 cut(s)	153, 260, 323
BseMII	CTCAG	1 cut(s)	453
BseNI	ACTGG	1 cut(s)	385
BseRI	GAGGAG	2 cut(s)	293, 434
BseXI	GCAGC	5 cut(s)	155, 181, 184, 449, 515
BseYI	CCCAGC	1 cut(s)	26
Bsh1236I	CGCG	1 cut(s)	129
BsiHKAI	GWGCWC	1 cut(s)	456
BsiSI	CCGG	2 cut(s)	73, 317
BslFI	GGGAC	1 cut(s)	44
BslI	CCNNNNNNNGG	3 cut(s)	153, 260, 323
BsmFI	GGGAC	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	456
Bsp13I	TCCGGA	1 cut(s)	72
Bsp68I	TCGCGA	1 cut(s)	129
BspCNI	CTCAG	1 cut(s)	454
BspEI	TCCGGA	1 cut(s)	72
BspFNI	CGCG	1 cut(s)	129
BspHI	TCATGA	1 cut(s)	566
BspLI	GGNNCC	1 cut(s)	32
BsrI	ACTGG	1 cut(s)	385
BssECI	CCNNGG	1 cut(s)	34
BssNAI	GTATAC	1 cut(s)	369
BssSI	CACGAG	1 cut(s)	455
BssT1I	CCWWGG	1 cut(s)	34
Bst1107I	GTATAC	1 cut(s)	369
Bst2BI	CACGAG	1 cut(s)	455
Bst2UI	CCWGG	1 cut(s)	535
Bst4CI	ACNGT	2 cut(s)	298, 373
BstDEI	CTNAG	1 cut(s)	462
BstF5I	GGATG	1 cut(s)	214
BstFNI	CGCG	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	533
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 86, 388
BstNI	CCWGG	1 cut(s)	535
BstSCI	CCNGG	1 cut(s)	533
BstSFI	CTRYAG	1 cut(s)	399
BstUI	CGCG	1 cut(s)	129
BstV1I	GCAGC	5 cut(s)	155, 181, 184, 449, 515
BstXI	CCANNNNNNTGG	1 cut(s)	392
BstZ17I	GTATAC	1 cut(s)	369
BtgZI	GCGATG	1 cut(s)	126
BtsCI	GGATG	1 cut(s)	214
BtsIMutI	CAGTG	3 cut(s)	17, 336, 392
BtuMI	TCGCGA	1 cut(s)	129
CciI	TCATGA	1 cut(s)	566
CfoI	GCGC	1 cut(s)	533
Cfr13I	GGNCC	1 cut(s)	31
Csp6I	GTAC	2 cut(s)	285, 406
CviAII	CATG	2 cut(s)	517, 567
CviJI	RGCY	9 cut(s)	13, 80, 146, 264, 316, 382, 391, 398, 528
CviKI_1	RGCY	9 cut(s)	13, 80, 146, 264, 316, 382, 391, 398, 528
CviQI	GTAC	2 cut(s)	285, 406
DdeI	CTNAG	1 cut(s)	462
DrdI	GACNNNNNNGTC	1 cut(s)	38
DseDI	GACNNNNNNGTC	1 cut(s)	38
Eco130I	CCWWGG	1 cut(s)	34
Eco32I	GATATC	1 cut(s)	54
Eco47I	GGWCC	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	369
EcoO109I	RGGNCCY	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	533
EcoRV	GATATC	1 cut(s)	54
EcoT14I	CCWWGG	1 cut(s)	34
ErhI	CCWWGG	1 cut(s)	34
FaeI	CATG	2 cut(s)	520, 570
FaiI	YATR	7 cut(s)	369, 401, 446, 480, 518, 546, 568
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	2 cut(s)	516, 566
FblI	GTMKAC	1 cut(s)	368
Fnu4HI	GCNGC	5 cut(s)	144, 195, 198, 438, 529
FokI	GGATG	1 cut(s)	201
Fsp4HI	GCNGC	5 cut(s)	144, 195, 198, 438, 529
FspBI	CTAG	2 cut(s)	35, 306
GlaI	GCGC	1 cut(s)	532
GluI	GCNGC	5 cut(s)	144, 195, 198, 438, 529
GsaI	CCCAGC	1 cut(s)	30
HapII	CCGG	2 cut(s)	73, 317
HhaI	GCGC	1 cut(s)	533
Hin1II	CATG	2 cut(s)	520, 570
Hin6I	GCGC	1 cut(s)	531
HinP1I	GCGC	1 cut(s)	531
HincII	GTYRAC	1 cut(s)	514
HindII	GTYRAC	1 cut(s)	514
HinfI	GANTC	5 cut(s)	131, 158, 320, 458, 521
HpaI	GTTAAC	1 cut(s)	514
HpaII	CCGG	2 cut(s)	73, 317
HphI	GGTGA	2 cut(s)	149, 338
Hpy166II	GTNNAC	3 cut(s)	369, 475, 514
Hpy188I	TCNGA	1 cut(s)	463
Hpy188III	TCNNGA	8 cut(s)	73, 128, 173, 182, 205, 254, 431, 567
Hpy8I	GTNNAC	3 cut(s)	369, 475, 514
HpyAV	CCTTC	2 cut(s)	70, 344
HpyCH4III	ACNGT	2 cut(s)	298, 373
HpyCH4V	TGCA	5 cut(s)	67, 89, 302, 344, 377
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 86, 388
HpyF3I	CTNAG	1 cut(s)	462
Hsp92II	CATG	2 cut(s)	520, 570
HspAI	GCGC	1 cut(s)	531
Kpn2I	TCCGGA	1 cut(s)	72
KspAI	GTTAAC	1 cut(s)	514
LmnI	GCTCC	1 cut(s)	395
Lsp1109I	GCAGC	5 cut(s)	155, 181, 184, 449, 515
LweI	GCATC	4 cut(s)	76, 311, 331, 449
MaeI	CTAG	2 cut(s)	35, 306
MaeIII	GTNAC	2 cut(s)	15, 292
MboII	GAAGA	2 cut(s)	502, 505
MhlI	GDGCHC	1 cut(s)	456
MluCI	AATT	1 cut(s)	68
MlyI	GAGTC	3 cut(s)	125, 329, 467
MnlI	CCTC	8 cut(s)	42, 271, 322, 405, 412, 415, 427, 457
MroI	TCCGGA	1 cut(s)	72
MseI	TTAA	2 cut(s)	222, 513
MspI	CCGG	2 cut(s)	73, 317
MspR9I	CCNGG	1 cut(s)	535
MvaI	CCWGG	1 cut(s)	535
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	3 cut(s)	10, 86, 388
NlaIII	CATG	2 cut(s)	520, 570
NlaIV	GGNNCC	1 cut(s)	32
NmuCI	GTSAC	2 cut(s)	15, 292
NruI	TCGCGA	1 cut(s)	129
PagI	TCATGA	1 cut(s)	566
PfeI	GAWTC	2 cut(s)	158, 521
PflMI	CCANNNNNTGG	1 cut(s)	260
PkrI	GCNGC	5 cut(s)	145, 196, 199, 439, 530
PleI	GAGTC	3 cut(s)	125, 328, 466
PpsI	GAGTC	3 cut(s)	125, 328, 466
PpuMI	RGGWCCY	1 cut(s)	31
PsiI	TTATAA	1 cut(s)	546
Psp5II	RGGWCCY	1 cut(s)	31
Psp6I	CCWGG	1 cut(s)	533
PspFI	CCCAGC	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	533
PspN4I	GGNNCC	1 cut(s)	32
PspPI	GGNCC	1 cut(s)	31
PspPPI	RGGWCCY	1 cut(s)	31
RruI	TCGCGA	1 cut(s)	129
RsaI	GTAC	2 cut(s)	286, 407
RsaNI	GTAC	2 cut(s)	285, 406
SaqAI	TTAA	2 cut(s)	222, 513
SatI	GCNGC	5 cut(s)	144, 195, 198, 438, 529
Sau96I	GGNCC	1 cut(s)	31
SchI	GAGTC	3 cut(s)	125, 329, 467
ScrFI	CCNGG	1 cut(s)	535
SduI	GDGCHC	1 cut(s)	456
SetI	ASST	8 cut(s)	15, 36, 168, 239, 328, 333, 400, 468
SfaNI	GCATC	4 cut(s)	76, 311, 331, 449
SfcI	CTRYAG	1 cut(s)	399
SinI	GGWCC	1 cut(s)	31
Sse9I	AATT	1 cut(s)	68
SspMI	CTAG	2 cut(s)	35, 306
StyD4I	CCNGG	1 cut(s)	533
StyI	CCWWGG	1 cut(s)	34
TaaI	ACNGT	2 cut(s)	298, 373
TasI	AATT	1 cut(s)	68
TatI	WGTACW	1 cut(s)	284
TfiI	GAWTC	2 cut(s)	158, 521
Tru1I	TTAA	2 cut(s)	222, 513
Tru9I	TTAA	2 cut(s)	222, 513
TscAI	CASTG	3 cut(s)	24, 343, 392
TseFI	GTSAC	2 cut(s)	15, 292
TseI	GCWGC	5 cut(s)	143, 194, 197, 437, 528
Tsp45I	GTSAC	2 cut(s)	15, 292
TspDTI	ATGAA	3 cut(s)	461, 522, 555
TspRI	CASTG	3 cut(s)	24, 343, 392
Van91I	CCANNNNNTGG	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	31
XmaJI	CCTAGG	1 cut(s)	34
XmiI	GTMKAC	1 cut(s)	368
XspI	CTAG	2 cut(s)	35, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.